ntEdit is a fast and scalable genomics application for polishing genome assembly drafts and other sequences.
ntEdit simplifies polishing and "haploidization" of gene and genome sequences with its re-usable Bloom filter design.

If you use ntEdit in your research, please cite:

ntEdit: scalable genome sequence polishing
René L Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J M Jones, Jean Bousquet, Joerg Bohlmann, Inanç Birol
Bioinformatics, Volume 35, Issue 21, 1 November 2019, Pages 4430–4432

Current Release

GitHub release page for ntEdit

Back to top