ntJoin is an assembly-guided scaffolder which uses a lightweight, alignment-free
mapping strategy in lieu of alignments to quickly contiguate a target assembly using one or more
references.
If you use ntJoin in your research, please cite:
Lauren Coombe, Vladimir Nikolic, Justin Chu, Inanc Birol, Rene L Warren: ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs. Bioinformatics (2020) doi: https://doi.org/10.1093/bioinformatics/btaa253.