Alternative expression values of the type: Transcript for comparison: ABC_vs

Alternative expression values of the type: Transcript for comparison: ABC_vs_GCB (abs(SI) value > 2)

Distribution of log2 SI values for comparison: ABC_vs_GCB and data type: Transcript

Distribution of all splicing index values that meet the SI cutoff (indicated by red dotted lines) for the feature type: Transcript. The total number of features with SI values exceeding the cutoff, as well as the max and min log2 SI observed are noted in the legend. *If you can not see the figure below, click here

The following table provides a ranked list of alternatively expressed Transcript features for a single pair-wise library comparison. The first column contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, and the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data). The 'SI' column reports the Splicing Index calculated for the feature. The 'Gene FC' column reports the Fold-Change calculated for the entire gene to which the feature belongs. The 'Seq FC' column reports the Fold-Change of the feature itself. The 'Reciprocity' column reports the Reciprocity Index (RI) for the feature. The 'Percent Seq DE' column reports the Percent Feature Contribution (PFC) value for the feature. A description of the purpose and calculation of SI, RI and PFC values can be found in our manuscript. Briefly, the SI value is a measure of the degree of change in expression of a feature (e.g. an exon) between two conditions relative to the change in expression at the gene level. The RI value is a measure of the degree to which the change of the feature is reciprocal in direction to that observed for the gene overall. For example, if an exon is up-regulated but the gene overall is down-regulated, this will give a higher RI value. The PFC value is a measure of the degree of differential expression of the feature compared to the entire gene. For example, if a gene is not changed overall between two conditions, but the feature is highly differentially expressed, this will give a higher PFC value. To sort this table by each of the data values, simply click the column header. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).

RANK	ABC_vs_GCB (Gene \| Feature \| Links)	SI	Gene FC	Seq FC	Reciprocity (RI)	Percent Seq DE (PFC)	q-value
1	PRPSAP2 \| ENST00000441887 \| ABC \| GCB	-3.66	-1.33	-16.80	N/A	90.85	0.895
2	ZCCHC7 \| ENST00000481507 \| ABC \| GCB	-3.42	-1.42	-15.16	N/A	88.58	0.895
3	STK17B \| ENST00000420683 \| ABC \| GCB	-3.31	-1.39	-13.76	N/A	88.89	0.895
4	SNX8 \| ENST00000419693 \| ABC \| GCB	-3.43	-1.04	-11.16	N/A	98.49	0.895
5	DPM2 \| ENST00000314392 \| ABC \| GCB	-3.04	1.11	-7.43	-1.11	95.15	0.895
6	ZCCHC7 \| ENST00000497924 \| ABC \| GCB	-2.37	-1.42	-7.34	N/A	85.05	0.895
7	LHFPL2 \| ENST00000380345 \| ABC \| GCB	-1.75	-2.17	-7.29	N/A	71.95	0.895
8	SLC4A5 \| ENST00000479776 \| ABC \| GCB	1.48	2.35	6.54	N/A	68.77	0.895
9	ATP6V1E1 \| ENST00000473248 \| ABC \| GCB	-2.38	1.01	-5.16	-1.01	99.62	0.895
10	NR3C1 \| ENST00000343796 \| ABC \| GCB	-1.51	-1.69	-4.81	N/A	74.90	0.895
11	TRAC \| ENST00000446106 \| ABC \| GCB	-1.97	-1.21	-4.73	N/A	89.22	0.895
12	NSBP1 \| ENST00000451455 \| ABC \| GCB	-1.14	-2.12	-4.67	N/A	67.24	0.895
13	BACH2 \| ENST00000406998 \| ABC \| GCB	-2.08	-1.11	-4.66	N/A	93.86	0.895
14	S100A13 \| ENST00000440685 \| ABC \| GCB	1.88	1.26	4.64	N/A	86.76	0.895
15	PFKL \| ENST00000491298 \| ABC \| GCB	-1.06	-2.14	-4.46	N/A	66.31	0.895
16	MMRN2 \| ENST00000474994 \| ABC \| GCB	2.80	-1.56	4.45	-1.85	77.00	0.666
17	LRWD1 \| ENST00000476270 \| ABC \| GCB	-1.74	-1.31	-4.38	N/A	84.50	0.895
18	STK17B \| ENST00000409228 \| ABC \| GCB	-1.66	-1.39	-4.37	N/A	81.82	0.895
19	LYRM4 \| ENST00000458438 \| ABC \| GCB	-2.14	1.01	-4.36	-1.02	99.12	0.895
20	HSPBP1 \| ENST00000433386 \| ABC \| GCB	-1.64	-1.37	-4.28	N/A	82.17	0.895
21	PSMB7 \| ENST00000478817 \| ABC \| GCB	-2.53	1.36	-4.25	-1.54	82.46	0.895
22	RP4-694B14.1 \| ENST00000439498 \| ABC \| GCB	1.83	1.18	4.21	N/A	89.45	0.895
23	CD72 \| ENST00000463720 \| ABC \| GCB	1.76	1.23	4.19	N/A	87.18	0.895
24	AKAP2 \| ENST00000259318 \| ABC \| GCB	-1.78	-1.21	-4.16	N/A	88.30	0.895
25	TMEM14C \| ENST00000466421 \| ABC \| GCB	1.98	1.04	4.08	N/A	97.44	0.895
26	ABI3BP \| ENST00000466947 \| ABC \| GCB	-1.14	-1.81	-3.98	N/A	69.98	0.895
27	PXK \| ENST00000495557 \| ABC \| GCB	-1.16	-1.72	-3.85	N/A	71.31	0.895
28	SPAG1 \| ENST00000251809 \| ABC \| GCB	2.41	-1.39	3.82	-1.65	80.31	0.895
29	SULF2 \| ENST00000433632 \| ABC \| GCB	1.21	1.64	3.80	N/A	72.92	0.895
30	ZNF668 \| ENST00000442862 \| ABC \| GCB	-1.56	-1.28	-3.77	N/A	84.51	0.895
31	LRP5L \| ENST00000484509 \| ABC \| GCB	-1.73	-1.13	-3.76	N/A	91.35	0.895
32	BANK1 \| ENST00000444316 \| ABC \| GCB	-1.25	-1.56	-3.71	N/A	74.69	0.895
33	RDH14 \| ENST00000468071 \| ABC \| GCB	1.91	-1.02	3.67	-1.04	98.23	0.895
34	IGHG2 \| ENST00000460164 \| ABC \| GCB	2.70	-1.80	3.61	-2.69	68.62	0.895
35	STRBP \| ENST00000348403 \| ABC \| GCB	-1.19	-1.58	-3.61	N/A	73.65	0.895
36	C3orf1 \| ENST00000493694 \| ABC \| GCB	1.07	1.69	3.55	N/A	70.70	0.895
37	ATP1B1 \| ENST00000367815 \| ABC \| GCB	-2.05	1.17	-3.55	-1.28	89.07	0.895
38	CRIP3 \| ENST00000274990 \| ABC \| GCB	-1.28	-1.46	-3.53	N/A	77.05	0.895
39	CENPM \| ENST00000396434 \| ABC \| GCB	-1.79	-1.01	-3.52	N/A	98.83	0.895
40	UBR3 \| ENST00000484596 \| ABC \| GCB	-1.47	-1.26	-3.49	N/A	84.41	0.895
41	C7orf44 \| ENST00000431651 \| ABC \| GCB	2.00	-1.15	3.46	-1.26	89.69	0.895
42	TREX1 \| ENST00000456089 \| ABC \| GCB	1.40	1.30	3.43	N/A	82.46	0.895
43	B3GAT1 \| ENST00000392580 \| ABC \| GCB	-1.28	8.26	3.41	N/A	36.74	0.895
44	IL6R \| ENST00000344086 \| ABC \| GCB	1.14	1.53	3.36	N/A	74.17	0.895
45	NFKBIL1 \| ENST00000376146 \| ABC \| GCB	-1.14	-1.52	-3.35	N/A	74.34	0.895
46	PVRIG \| ENST00000471803 \| ABC \| GCB	-1.29	-1.37	-3.34	N/A	79.47	0.895
47	ELL3 \| ENST00000497700 \| ABC \| GCB	-1.29	-1.36	-3.32	N/A	79.77	0.895
48	HCLS1 \| ENST00000428394 \| ABC \| GCB	1.64	1.05	3.28	N/A	95.72	0.895
49	TBC1D15 \| ENST00000491063 \| ABC \| GCB	1.57	1.10	3.28	N/A	92.36	0.895
50	SERF2 \| ENST00000249786 \| ABC \| GCB	-1.63	-1.05	-3.26	N/A	95.98	0.895
51	EPB41 \| ENST00000488277 \| ABC \| GCB	-1.03	-1.59	-3.24	N/A	71.81	0.895
52	OSBPL10 \| ENST00000466604 \| ABC \| GCB	-1.17	-1.42	-3.21	N/A	76.77	0.895
53	ATXN7L1 \| ENST00000318724 \| ABC \| GCB	1.39	1.22	3.20	N/A	85.22	0.895
54	ZFYVE20 \| ENST00000449964 \| ABC \| GCB	-1.69	1.01	-3.19	-1.02	99.06	0.895
55	MSH2 \| ENST00000406134 \| ABC \| GCB	-1.74	1.05	-3.18	-1.09	96.00	0.895
56	PDLIM7 \| ENST00000359895 \| ABC \| GCB	-1.31	-1.27	-3.15	N/A	82.77	0.895
57	CLTC \| ENST00000472651 \| ABC \| GCB	-1.40	-1.19	-3.14	N/A	86.70	0.895
58	ITGAE \| ENST00000263087 \| ABC \| GCB	-2.13	1.41	-3.11	-1.86	76.91	0.895
59	SMTN \| ENST00000422839 \| ABC \| GCB	2.12	-1.40	3.11	-1.85	77.01	0.895
60	EBP \| ENST00000498425 \| ABC \| GCB	1.19	1.35	3.07	N/A	79.03	0.895
61	C17orf45 \| ENST00000487066 \| ABC \| GCB	1.61	1.00	3.05	N/A	99.84	0.895
62	PIK3AP1 \| ENST00000468783 \| ABC \| GCB	-1.14	-1.37	-3.02	N/A	77.89	0.895
63	ARHGAP24 \| ENST00000395184 \| ABC \| GCB	-2.42	1.81	-2.96	-3.40	64.70	0.895
64	FDPS \| ENST00000492244 \| ABC \| GCB	1.54	1.01	2.95	N/A	98.81	0.895
65	ELL3 \| ENST00000467869 \| ABC \| GCB	-1.12	-1.36	-2.94	N/A	77.97	0.895
66	ARSA \| ENST00000453344 \| ABC \| GCB	-1.28	-1.19	-2.89	N/A	86.14	0.666
67	AKAP2 \| ENST00000471798 \| ABC \| GCB	-1.25	-1.21	-2.87	N/A	84.79	0.895
68	XAF1 \| ENST00000346752 \| ABC \| GCB	-1.72	1.15	-2.86	-1.31	88.29	0.895
69	ICAM2 \| ENST00000418105 \| ABC \| GCB	-1.31	-1.15	-2.86	N/A	88.04	0.895
70	AC090774.4 \| ENST00000443508 \| ABC \| GCB	-2.67	2.23	-2.84	-7.69	56.50	0.895
71	ERBB2IP \| ENST00000416865 \| ABC \| GCB	-1.51	1.00	-2.84	-1.00	99.93	0.895
72	USP40 \| ENST00000496298 \| ABC \| GCB	-1.23	-1.21	-2.84	N/A	84.72	0.895
73	SDHB \| ENST00000491274 \| ABC \| GCB	1.14	1.29	2.84	N/A	80.50	0.895
74	YWHAZ \| ENST00000418997 \| ABC \| GCB	-1.35	-1.11	-2.82	N/A	90.78	0.895
75	LNPEP \| ENST00000395770 \| ABC \| GCB	1.46	1.02	2.81	N/A	97.70	0.895
76	SYK \| ENST00000375746 \| ABC \| GCB	-1.32	-1.12	-2.81	N/A	89.78	0.895
77	ARHGAP25 \| ENST00000485700 \| ABC \| GCB	-1.75	1.20	-2.81	-1.42	85.11	0.895
78	SLC41A1 \| ENST00000484228 \| ABC \| GCB	1.63	-1.10	2.80	-1.21	91.19	0.895
79	ZNF415 \| ENST00000421033 \| ABC \| GCB	1.61	-1.12	2.73	-1.25	90.02	0.895
80	CCDC58 \| ENST00000497726 \| ABC \| GCB	-2.64	2.29	-2.72	-10.74	54.65	0.895
81	XRCC3 \| ENST00000352127 \| ABC \| GCB	1.67	-1.18	2.70	-1.41	85.56	0.895
82	SLC39A1 \| ENST00000368621 \| ABC \| GCB	-1.28	-1.11	-2.69	N/A	90.26	0.895
83	SPHK2 \| ENST00000426514 \| ABC \| GCB	-1.32	-1.07	-2.68	N/A	93.26	0.895
84	NCSTN \| ENST00000424645 \| ABC \| GCB	-1.53	1.10	-2.62	-1.22	90.96	0.895
85	AC002480.6 \| ENST00000325349 \| ABC \| GCB	1.06	1.26	2.62	N/A	80.84	0.895
86	CECR5 \| ENST00000486462 \| ABC \| GCB	-1.38	-1.01	-2.61	N/A	99.41	0.895
87	URG4 \| ENST00000426198 \| ABC \| GCB	-1.12	-1.20	-2.61	N/A	84.19	0.895
88	PSMB9 \| ENST00000414474 \| ABC \| GCB	-1.56	1.13	-2.61	-1.30	88.43	0.895
89	IL12RB1 \| ENST00000221270 \| ABC \| GCB	-1.07	-1.24	-2.60	N/A	81.54	0.895
90	SUMO1 \| ENST00000392246 \| ABC \| GCB	-1.97	1.51	-2.59	-2.55	69.64	0.895
91	TOP2B \| ENST00000419167 \| ABC \| GCB	-1.07	-1.23	-2.58	N/A	82.03	0.895
92	MGEA5 \| ENST00000439817 \| ABC \| GCB	-1.05	-1.25	-2.58	N/A	80.94	0.895
93	EEF1D \| ENST00000422753 \| ABC \| GCB	-1.00	-1.28	-2.57	N/A	79.05	0.895
94	REPIN1 \| ENST00000467980 \| ABC \| GCB	-1.19	-1.12	-2.55	N/A	89.09	0.895
95	USMG5 \| ENST00000369815 \| ABC \| GCB	1.06	1.21	2.53	N/A	82.83	0.895
96	AGPAT3 \| ENST00000398061 \| ABC \| GCB	-1.31	-1.02	-2.52	N/A	97.99	0.895
97	SERF2 \| ENST00000381359 \| ABC \| GCB	-1.26	-1.05	-2.51	N/A	94.90	0.895
98	AC010746.3 \| ENST00000392308 \| ABC \| GCB	1.02	1.24	2.50	N/A	81.28	0.895
99	DHRS4 \| ENST00000397074 \| ABC \| GCB	-1.33	1.01	-2.49	-1.02	99.06	0.895
100	AC074289.1 \| ENST00000413030 \| ABC \| GCB	-1.03	-1.22	-2.49	N/A	82.04	0.895
101	BRD2 \| ENST00000495733 \| ABC \| GCB	-1.16	-1.11	-2.47	N/A	90.02	0.895
102	ATP2A1 \| ENST00000395503 \| ABC \| GCB	1.82	-1.43	2.47	-2.32	71.54	0.895
103	ARHGAP24 \| ENST00000395183 \| ABC \| GCB	-2.16	1.81	-2.47	-4.82	60.38	0.895
104	TPM4 \| ENST00000344824 \| ABC \| GCB	-1.79	1.41	-2.46	-2.24	72.33	0.895
105	METTL11A \| ENST00000372483 \| ABC \| GCB	1.19	1.07	2.44	N/A	93.01	0.895
106	SH3BGRL \| ENST00000463546 \| ABC \| GCB	1.62	-1.26	2.44	-1.69	79.66	0.895
107	COMMD6 \| ENST00000355801 \| ABC \| GCB	-1.19	-1.07	-2.43	N/A	93.13	0.895
108	TMEM214 \| ENST00000404032 \| ABC \| GCB	-1.15	-1.09	-2.42	N/A	91.43	0.895
109	RP11-220I1.2 \| ENST00000430809 \| ABC \| GCB	1.40	-1.09	2.41	-1.22	90.86	0.895
110	CREB1 \| ENST00000494983 \| ABC \| GCB	1.33	-1.04	2.41	-1.10	95.41	0.895
111	RABGAP1L \| ENST00000367690 \| ABC \| GCB	-1.07	-1.14	-2.39	N/A	86.91	0.895
112	AHCTF1 \| ENST00000498601 \| ABC \| GCB	-1.18	-1.04	-2.37	N/A	95.20	0.895
113	NEDD1 \| ENST00000411739 \| ABC \| GCB	-1.27	1.02	-2.37	-1.04	98.03	0.895
114	NT5C2 \| ENST00000470299 \| ABC \| GCB	-1.17	-1.05	-2.36	N/A	94.77	0.895
115	GOSR2 \| ENST00000225567 \| ABC \| GCB	1.13	1.08	2.36	N/A	92.12	0.895
116	DSCR3 \| ENST00000476950 \| ABC \| GCB	1.05	1.13	2.34	N/A	87.30	0.895
117	NFYC \| ENST00000372652 \| ABC \| GCB	-1.20	-1.02	-2.34	N/A	98.01	0.895
118	PANK2 \| ENST00000399552 \| ABC \| GCB	1.08	1.11	2.34	N/A	89.43	0.895
119	MPG \| ENST00000475280 \| ABC \| GCB	-1.95	1.66	-2.33	-3.99	62.54	0.895
120	EIF3D \| ENST00000478547 \| ABC \| GCB	1.13	1.06	2.32	N/A	93.54	0.895
121	TCP1 \| ENST00000392168 \| ABC \| GCB	-1.38	1.13	-2.31	-1.34	87.41	0.895
122	PSMB7 \| ENST00000474081 \| ABC \| GCB	-1.65	1.36	-2.31	-2.16	73.16	0.895
123	RBM39 \| ENST00000463098 \| ABC \| GCB	1.41	-1.15	2.31	-1.41	85.52	0.895
124	METTL11A \| ENST00000482347 \| ABC \| GCB	1.11	1.07	2.30	N/A	92.55	0.895
125	ADD3 \| ENST00000468345 \| ABC \| GCB	1.69	-1.42	2.28	-2.46	70.31	0.895
126	SYS1 \| ENST00000453003 \| ABC \| GCB	1.10	1.07	2.28	N/A	92.81	0.895
127	ZNF226 \| ENST00000413984 \| ABC \| GCB	1.14	1.03	2.26	N/A	96.77	0.895
128	EXOG \| ENST00000447573 \| ABC \| GCB	-1.52	1.27	-2.25	-1.84	77.12	0.895
129	IFT88 \| ENST00000351808 \| ABC \| GCB	1.14	1.02	2.25	N/A	97.38	0.895
130	SAP30BP \| ENST00000293208 \| ABC \| GCB	-1.01	-1.12	-2.25	N/A	88.13	0.895
131	PSRC1 \| ENST00000369904 \| ABC \| GCB	1.09	1.04	2.23	N/A	95.05	0.895
132	UNC84A \| ENST00000483996 \| ABC \| GCB	1.23	-1.06	2.23	-1.14	93.72	0.895
133	ZFAND5 \| ENST00000343431 \| ABC \| GCB	1.15	1.00	2.23	N/A	99.75	0.895
134	RP11-371B4.1 \| ENST00000359713 \| ABC \| GCB	1.41	-1.22	2.19	-1.66	80.05	0.895
135	TLE6 \| ENST00000482627 \| ABC \| GCB	1.33	-1.15	2.19	-1.44	84.83	0.895
136	PITPNB \| ENST00000320996 \| ABC \| GCB	-1.33	1.15	-2.18	-1.45	84.40	0.895
137	RPL8 \| ENST00000394920 \| ABC \| GCB	1.23	-1.08	2.17	-1.22	90.82	0.895
138	PPP2R4 \| ENST00000423100 \| ABC \| GCB	-1.01	-1.07	-2.15	N/A	91.81	0.895
139	SDHALP2 \| ENST00000455183 \| ABC \| GCB	1.03	1.05	2.13	N/A	94.43	0.895
140	SH3GLB2 \| ENST00000372559 \| ABC \| GCB	1.05	1.02	2.12	N/A	97.03	0.895
141	NDEL1 \| ENST00000380025 \| ABC \| GCB	-1.08	1.00	-2.11	-1.00	99.86	0.895
142	ZNF512 \| ENST00000494548 \| ABC \| GCB	1.52	-1.36	2.10	-2.41	70.77	0.895
143	CREB3L4 \| ENST00000477617 \| ABC \| GCB	1.72	-1.58	2.09	-4.24	61.78	0.895
144	RPL36A \| ENST00000372849 \| ABC \| GCB	-1.89	1.77	-2.09	-8.07	56.19	0.895
145	LA16c-60H5.1 \| ENST00000399898 \| ABC \| GCB	1.35	-1.23	2.07	-1.81	77.66	0.895
146	PNPLA4 \| ENST00000442940 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.98	0.895
147	PNPLA4 \| ENST00000444736 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.96	0.895
148	WWC3 \| ENST00000466248 \| ABC \| GCB	1.14	-1.07	2.06	-1.21	91.47	0.895
149	UBE2E1 \| ENST00000346855 \| ABC \| GCB	1.05	-1.00	2.06	-1.01	99.33	0.895
150	CAMTA1 \| ENST00000476163 \| ABC \| GCB	-1.18	1.10	-2.05	-1.32	87.87	0.895
151	ICAM1 \| ENST00000444336 \| ABC \| GCB	1.24	-1.15	2.05	-1.49	83.55	0.895
152	INSIG1 \| ENST00000342407 \| ABC \| GCB	-1.31	1.21	-2.05	-1.72	79.13	0.895
153	TMEM50B \| ENST00000484377 \| ABC \| GCB	-1.21	1.13	-2.05	-1.40	85.77	0.895
154	VAMP7 \| ENST00000488344 \| ABC \| GCB	-1.27	1.18	-2.04	-1.61	81.05	0.895
155	CCNDBP1 \| ENST00000356633 \| ABC \| GCB	-1.10	1.05	-2.03	-1.16	93.16	0.895
156	MYL6 \| ENST00000348108 \| ABC \| GCB	-1.02	1.00	-2.02	-1.00	99.82	0.895
157	FRMD4A \| ENST00000492155 \| ABC \| GCB	1.09	-1.06	2.02	-1.17	92.67	0.895
158	CCNL2 \| ENST00000488340 \| ABC \| GCB	1.09	-1.06	2.01	-1.18	92.30	0.895
159	VCAM1 \| ENST00000347652 \| ABC \| GCB	1.11	-1.08	2.01	-1.23	90.56	0.895
160	RP5-1051J4.2 \| ENST00000313192 \| ABC \| GCB	1.39	-1.31	2.00	-2.25	72.21	0.895