Alternative expression values of the type: Transcript for comparison: ABC_vs

Alternative expression values of the type: Transcript for comparison: ABC_vs_GCB (abs(SI) value > 2)

Distribution of log2 SI values for comparison: ABC_vs_GCB and data type: Transcript

Distribution of all splicing index values that meet the SI cutoff (indicated by red dotted lines) for the feature type: Transcript. The total number of features with SI values exceeding the cutoff, as well as the max and min log2 SI observed are noted in the legend. *If you can not see the figure below, click here

The following table provides a ranked list of alternatively expressed Transcript features for a single pair-wise library comparison. The first column contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, and the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data). The 'SI' column reports the Splicing Index calculated for the feature. The 'Gene FC' column reports the Fold-Change calculated for the entire gene to which the feature belongs. The 'Seq FC' column reports the Fold-Change of the feature itself. The 'Reciprocity' column reports the Reciprocity Index (RI) for the feature. The 'Percent Seq DE' column reports the Percent Feature Contribution (PFC) value for the feature. A description of the purpose and calculation of SI, RI and PFC values can be found in our manuscript. Briefly, the SI value is a measure of the degree of change in expression of a feature (e.g. an exon) between two conditions relative to the change in expression at the gene level. The RI value is a measure of the degree to which the change of the feature is reciprocal in direction to that observed for the gene overall. For example, if an exon is up-regulated but the gene overall is down-regulated, this will give a higher RI value. The PFC value is a measure of the degree of differential expression of the feature compared to the entire gene. For example, if a gene is not changed overall between two conditions, but the feature is highly differentially expressed, this will give a higher PFC value. To sort this table by each of the data values, simply click the column header. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).

RANK	ABC_vs_GCB (Gene \| Feature \| Links)	SI	Gene FC	Seq FC	Reciprocity (RI)	Percent Seq DE (PFC)	q-value
1	CCDC58 \| ENST00000497726 \| ABC \| GCB	-2.64	2.29	-2.72	-10.74	54.65	0.895
2	RPL36A \| ENST00000372849 \| ABC \| GCB	-1.89	1.77	-2.09	-8.07	56.19	0.895
3	AC090774.4 \| ENST00000443508 \| ABC \| GCB	-2.67	2.23	-2.84	-7.69	56.50	0.895
4	ARHGAP24 \| ENST00000395183 \| ABC \| GCB	-2.16	1.81	-2.47	-4.82	60.38	0.895
5	CREB3L4 \| ENST00000477617 \| ABC \| GCB	1.72	-1.58	2.09	-4.24	61.78	0.895
6	MPG \| ENST00000475280 \| ABC \| GCB	-1.95	1.66	-2.33	-3.99	62.54	0.895
7	ARHGAP24 \| ENST00000395184 \| ABC \| GCB	-2.42	1.81	-2.96	-3.40	64.70	0.895
8	IGHG2 \| ENST00000460164 \| ABC \| GCB	2.70	-1.80	3.61	-2.69	68.62	0.895
9	SUMO1 \| ENST00000392246 \| ABC \| GCB	-1.97	1.51	-2.59	-2.55	69.64	0.895
10	ADD3 \| ENST00000468345 \| ABC \| GCB	1.69	-1.42	2.28	-2.46	70.31	0.895
11	ZNF512 \| ENST00000494548 \| ABC \| GCB	1.52	-1.36	2.10	-2.41	70.77	0.895
12	ATP2A1 \| ENST00000395503 \| ABC \| GCB	1.82	-1.43	2.47	-2.32	71.54	0.895
13	RP5-1051J4.2 \| ENST00000313192 \| ABC \| GCB	1.39	-1.31	2.00	-2.25	72.21	0.895
14	TPM4 \| ENST00000344824 \| ABC \| GCB	-1.79	1.41	-2.46	-2.24	72.33	0.895
15	PSMB7 \| ENST00000474081 \| ABC \| GCB	-1.65	1.36	-2.31	-2.16	73.16	0.895
16	ITGAE \| ENST00000263087 \| ABC \| GCB	-2.13	1.41	-3.11	-1.86	76.91	0.895
17	MMRN2 \| ENST00000474994 \| ABC \| GCB	2.80	-1.56	4.45	-1.85	77.00	0.666
18	SMTN \| ENST00000422839 \| ABC \| GCB	2.12	-1.40	3.11	-1.85	77.01	0.895
19	EXOG \| ENST00000447573 \| ABC \| GCB	-1.52	1.27	-2.25	-1.84	77.12	0.895
20	LA16c-60H5.1 \| ENST00000399898 \| ABC \| GCB	1.35	-1.23	2.07	-1.81	77.66	0.895
21	INSIG1 \| ENST00000342407 \| ABC \| GCB	-1.31	1.21	-2.05	-1.72	79.13	0.895
22	SH3BGRL \| ENST00000463546 \| ABC \| GCB	1.62	-1.26	2.44	-1.69	79.66	0.895
23	RP11-371B4.1 \| ENST00000359713 \| ABC \| GCB	1.41	-1.22	2.19	-1.66	80.05	0.895
24	SPAG1 \| ENST00000251809 \| ABC \| GCB	2.41	-1.39	3.82	-1.65	80.31	0.895
25	VAMP7 \| ENST00000488344 \| ABC \| GCB	-1.27	1.18	-2.04	-1.61	81.05	0.895
26	PSMB7 \| ENST00000478817 \| ABC \| GCB	-2.53	1.36	-4.25	-1.54	82.46	0.895
27	ICAM1 \| ENST00000444336 \| ABC \| GCB	1.24	-1.15	2.05	-1.49	83.55	0.895
28	PITPNB \| ENST00000320996 \| ABC \| GCB	-1.33	1.15	-2.18	-1.45	84.40	0.895
29	TLE6 \| ENST00000482627 \| ABC \| GCB	1.33	-1.15	2.19	-1.44	84.83	0.895
30	ARHGAP25 \| ENST00000485700 \| ABC \| GCB	-1.75	1.20	-2.81	-1.42	85.11	0.895
31	RBM39 \| ENST00000463098 \| ABC \| GCB	1.41	-1.15	2.31	-1.41	85.52	0.895
32	XRCC3 \| ENST00000352127 \| ABC \| GCB	1.67	-1.18	2.70	-1.41	85.56	0.895
33	TMEM50B \| ENST00000484377 \| ABC \| GCB	-1.21	1.13	-2.05	-1.40	85.77	0.895
34	TCP1 \| ENST00000392168 \| ABC \| GCB	-1.38	1.13	-2.31	-1.34	87.41	0.895
35	CAMTA1 \| ENST00000476163 \| ABC \| GCB	-1.18	1.10	-2.05	-1.32	87.87	0.895
36	XAF1 \| ENST00000346752 \| ABC \| GCB	-1.72	1.15	-2.86	-1.31	88.29	0.895
37	PSMB9 \| ENST00000414474 \| ABC \| GCB	-1.56	1.13	-2.61	-1.30	88.43	0.895
38	PNPLA4 \| ENST00000444736 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.96	0.895
39	PNPLA4 \| ENST00000442940 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.98	0.895
40	ATP1B1 \| ENST00000367815 \| ABC \| GCB	-2.05	1.17	-3.55	-1.28	89.07	0.895
41	C7orf44 \| ENST00000431651 \| ABC \| GCB	2.00	-1.15	3.46	-1.26	89.69	0.895
42	ZNF415 \| ENST00000421033 \| ABC \| GCB	1.61	-1.12	2.73	-1.25	90.02	0.895
43	VCAM1 \| ENST00000347652 \| ABC \| GCB	1.11	-1.08	2.01	-1.23	90.56	0.895
44	RPL8 \| ENST00000394920 \| ABC \| GCB	1.23	-1.08	2.17	-1.22	90.82	0.895
45	RP11-220I1.2 \| ENST00000430809 \| ABC \| GCB	1.40	-1.09	2.41	-1.22	90.86	0.895
46	NCSTN \| ENST00000424645 \| ABC \| GCB	-1.53	1.10	-2.62	-1.22	90.96	0.895
47	SLC41A1 \| ENST00000484228 \| ABC \| GCB	1.63	-1.10	2.80	-1.21	91.19	0.895
48	WWC3 \| ENST00000466248 \| ABC \| GCB	1.14	-1.07	2.06	-1.21	91.47	0.895
49	CCNL2 \| ENST00000488340 \| ABC \| GCB	1.09	-1.06	2.01	-1.18	92.30	0.895
50	FRMD4A \| ENST00000492155 \| ABC \| GCB	1.09	-1.06	2.02	-1.17	92.67	0.895
51	CCNDBP1 \| ENST00000356633 \| ABC \| GCB	-1.10	1.05	-2.03	-1.16	93.16	0.895
52	UNC84A \| ENST00000483996 \| ABC \| GCB	1.23	-1.06	2.23	-1.14	93.72	0.895
53	DPM2 \| ENST00000314392 \| ABC \| GCB	-3.04	1.11	-7.43	-1.11	95.15	0.895
54	CREB1 \| ENST00000494983 \| ABC \| GCB	1.33	-1.04	2.41	-1.10	95.41	0.895
55	MSH2 \| ENST00000406134 \| ABC \| GCB	-1.74	1.05	-3.18	-1.09	96.00	0.895
56	NEDD1 \| ENST00000411739 \| ABC \| GCB	-1.27	1.02	-2.37	-1.04	98.03	0.895
57	RDH14 \| ENST00000468071 \| ABC \| GCB	1.91	-1.02	3.67	-1.04	98.23	0.895
58	DHRS4 \| ENST00000397074 \| ABC \| GCB	-1.33	1.01	-2.49	-1.02	99.06	0.895
59	ZFYVE20 \| ENST00000449964 \| ABC \| GCB	-1.69	1.01	-3.19	-1.02	99.06	0.895
60	LYRM4 \| ENST00000458438 \| ABC \| GCB	-2.14	1.01	-4.36	-1.02	99.12	0.895
61	UBE2E1 \| ENST00000346855 \| ABC \| GCB	1.05	-1.00	2.06	-1.01	99.33	0.895
62	ATP6V1E1 \| ENST00000473248 \| ABC \| GCB	-2.38	1.01	-5.16	-1.01	99.62	0.895
63	MYL6 \| ENST00000348108 \| ABC \| GCB	-1.02	1.00	-2.02	-1.00	99.82	0.895
64	NDEL1 \| ENST00000380025 \| ABC \| GCB	-1.08	1.00	-2.11	-1.00	99.86	0.895
65	ERBB2IP \| ENST00000416865 \| ABC \| GCB	-1.51	1.00	-2.84	-1.00	99.93	0.895
66	TMEM214 \| ENST00000404032 \| ABC \| GCB	-1.15	-1.09	-2.42	N/A	91.43	0.895
67	AKAP2 \| ENST00000471798 \| ABC \| GCB	-1.25	-1.21	-2.87	N/A	84.79	0.895
68	DSCR3 \| ENST00000476950 \| ABC \| GCB	1.05	1.13	2.34	N/A	87.30	0.895
69	YWHAZ \| ENST00000418997 \| ABC \| GCB	-1.35	-1.11	-2.82	N/A	90.78	0.895
70	COMMD6 \| ENST00000355801 \| ABC \| GCB	-1.19	-1.07	-2.43	N/A	93.13	0.895
71	HSPBP1 \| ENST00000433386 \| ABC \| GCB	-1.64	-1.37	-4.28	N/A	82.17	0.895
72	IL12RB1 \| ENST00000221270 \| ABC \| GCB	-1.07	-1.24	-2.60	N/A	81.54	0.895
73	MGEA5 \| ENST00000439817 \| ABC \| GCB	-1.05	-1.25	-2.58	N/A	80.94	0.895
74	ZCCHC7 \| ENST00000481507 \| ABC \| GCB	-3.42	-1.42	-15.16	N/A	88.58	0.895
75	PVRIG \| ENST00000471803 \| ABC \| GCB	-1.29	-1.37	-3.34	N/A	79.47	0.895
76	UBR3 \| ENST00000484596 \| ABC \| GCB	-1.47	-1.26	-3.49	N/A	84.41	0.895
77	RABGAP1L \| ENST00000367690 \| ABC \| GCB	-1.07	-1.14	-2.39	N/A	86.91	0.895
78	EIF3D \| ENST00000478547 \| ABC \| GCB	1.13	1.06	2.32	N/A	93.54	0.895
79	REPIN1 \| ENST00000467980 \| ABC \| GCB	-1.19	-1.12	-2.55	N/A	89.09	0.895
80	LNPEP \| ENST00000395770 \| ABC \| GCB	1.46	1.02	2.81	N/A	97.70	0.895
81	ATXN7L1 \| ENST00000318724 \| ABC \| GCB	1.39	1.22	3.20	N/A	85.22	0.895
82	PPP2R4 \| ENST00000423100 \| ABC \| GCB	-1.01	-1.07	-2.15	N/A	91.81	0.895
83	EEF1D \| ENST00000422753 \| ABC \| GCB	-1.00	-1.28	-2.57	N/A	79.05	0.895
84	C17orf45 \| ENST00000487066 \| ABC \| GCB	1.61	1.00	3.05	N/A	99.84	0.895
85	ELL3 \| ENST00000497700 \| ABC \| GCB	-1.29	-1.36	-3.32	N/A	79.77	0.895
86	TBC1D15 \| ENST00000491063 \| ABC \| GCB	1.57	1.10	3.28	N/A	92.36	0.895
87	GOSR2 \| ENST00000225567 \| ABC \| GCB	1.13	1.08	2.36	N/A	92.12	0.895
88	SLC39A1 \| ENST00000368621 \| ABC \| GCB	-1.28	-1.11	-2.69	N/A	90.26	0.895
89	TRAC \| ENST00000446106 \| ABC \| GCB	-1.97	-1.21	-4.73	N/A	89.22	0.895
90	CECR5 \| ENST00000486462 \| ABC \| GCB	-1.38	-1.01	-2.61	N/A	99.41	0.895
91	URG4 \| ENST00000426198 \| ABC \| GCB	-1.12	-1.20	-2.61	N/A	84.19	0.895
92	PRPSAP2 \| ENST00000441887 \| ABC \| GCB	-3.66	-1.33	-16.80	N/A	90.85	0.895
93	HCLS1 \| ENST00000428394 \| ABC \| GCB	1.64	1.05	3.28	N/A	95.72	0.895
94	TREX1 \| ENST00000456089 \| ABC \| GCB	1.40	1.30	3.43	N/A	82.46	0.895
95	ZNF226 \| ENST00000413984 \| ABC \| GCB	1.14	1.03	2.26	N/A	96.77	0.895
96	ABI3BP \| ENST00000466947 \| ABC \| GCB	-1.14	-1.81	-3.98	N/A	69.98	0.895
97	AC010746.3 \| ENST00000392308 \| ABC \| GCB	1.02	1.24	2.50	N/A	81.28	0.895
98	SDHALP2 \| ENST00000455183 \| ABC \| GCB	1.03	1.05	2.13	N/A	94.43	0.895
99	PXK \| ENST00000495557 \| ABC \| GCB	-1.16	-1.72	-3.85	N/A	71.31	0.895
100	SDHB \| ENST00000491274 \| ABC \| GCB	1.14	1.29	2.84	N/A	80.50	0.895
101	TMEM14C \| ENST00000466421 \| ABC \| GCB	1.98	1.04	4.08	N/A	97.44	0.895
102	CENPM \| ENST00000396434 \| ABC \| GCB	-1.79	-1.01	-3.52	N/A	98.83	0.895
103	SULF2 \| ENST00000433632 \| ABC \| GCB	1.21	1.64	3.80	N/A	72.92	0.895
104	LRWD1 \| ENST00000476270 \| ABC \| GCB	-1.74	-1.31	-4.38	N/A	84.50	0.895
105	STK17B \| ENST00000409228 \| ABC \| GCB	-1.66	-1.39	-4.37	N/A	81.82	0.895
106	USP40 \| ENST00000496298 \| ABC \| GCB	-1.23	-1.21	-2.84	N/A	84.72	0.895
107	RP4-694B14.1 \| ENST00000439498 \| ABC \| GCB	1.83	1.18	4.21	N/A	89.45	0.895
108	ZFAND5 \| ENST00000343431 \| ABC \| GCB	1.15	1.00	2.23	N/A	99.75	0.895
109	STRBP \| ENST00000348403 \| ABC \| GCB	-1.19	-1.58	-3.61	N/A	73.65	0.895
110	LHFPL2 \| ENST00000380345 \| ABC \| GCB	-1.75	-2.17	-7.29	N/A	71.95	0.895
111	EPB41 \| ENST00000488277 \| ABC \| GCB	-1.03	-1.59	-3.24	N/A	71.81	0.895
112	B3GAT1 \| ENST00000392580 \| ABC \| GCB	-1.28	8.26	3.41	N/A	36.74	0.895
113	ZNF668 \| ENST00000442862 \| ABC \| GCB	-1.56	-1.28	-3.77	N/A	84.51	0.895
114	SPHK2 \| ENST00000426514 \| ABC \| GCB	-1.32	-1.07	-2.68	N/A	93.26	0.895
115	NT5C2 \| ENST00000470299 \| ABC \| GCB	-1.17	-1.05	-2.36	N/A	94.77	0.895
116	EBP \| ENST00000498425 \| ABC \| GCB	1.19	1.35	3.07	N/A	79.03	0.895
117	CRIP3 \| ENST00000274990 \| ABC \| GCB	-1.28	-1.46	-3.53	N/A	77.05	0.895
118	PANK2 \| ENST00000399552 \| ABC \| GCB	1.08	1.11	2.34	N/A	89.43	0.895
119	CD72 \| ENST00000463720 \| ABC \| GCB	1.76	1.23	4.19	N/A	87.18	0.895
120	BACH2 \| ENST00000406998 \| ABC \| GCB	-2.08	-1.11	-4.66	N/A	93.86	0.895
121	NFYC \| ENST00000372652 \| ABC \| GCB	-1.20	-1.02	-2.34	N/A	98.01	0.895
122	NSBP1 \| ENST00000451455 \| ABC \| GCB	-1.14	-2.12	-4.67	N/A	67.24	0.895
123	AGPAT3 \| ENST00000398061 \| ABC \| GCB	-1.31	-1.02	-2.52	N/A	97.99	0.895
124	ELL3 \| ENST00000467869 \| ABC \| GCB	-1.12	-1.36	-2.94	N/A	77.97	0.895
125	BRD2 \| ENST00000495733 \| ABC \| GCB	-1.16	-1.11	-2.47	N/A	90.02	0.895
126	SYS1 \| ENST00000453003 \| ABC \| GCB	1.10	1.07	2.28	N/A	92.81	0.895
127	PIK3AP1 \| ENST00000468783 \| ABC \| GCB	-1.14	-1.37	-3.02	N/A	77.89	0.895
128	SLC4A5 \| ENST00000479776 \| ABC \| GCB	1.48	2.35	6.54	N/A	68.77	0.895
129	SNX8 \| ENST00000419693 \| ABC \| GCB	-3.43	-1.04	-11.16	N/A	98.49	0.895
130	AC002480.6 \| ENST00000325349 \| ABC \| GCB	1.06	1.26	2.62	N/A	80.84	0.895
131	C3orf1 \| ENST00000493694 \| ABC \| GCB	1.07	1.69	3.55	N/A	70.70	0.895
132	BANK1 \| ENST00000444316 \| ABC \| GCB	-1.25	-1.56	-3.71	N/A	74.69	0.895
133	ZCCHC7 \| ENST00000497924 \| ABC \| GCB	-2.37	-1.42	-7.34	N/A	85.05	0.895
134	AKAP2 \| ENST00000259318 \| ABC \| GCB	-1.78	-1.21	-4.16	N/A	88.30	0.895
135	METTL11A \| ENST00000372483 \| ABC \| GCB	1.19	1.07	2.44	N/A	93.01	0.895
136	SYK \| ENST00000375746 \| ABC \| GCB	-1.32	-1.12	-2.81	N/A	89.78	0.895
137	TOP2B \| ENST00000419167 \| ABC \| GCB	-1.07	-1.23	-2.58	N/A	82.03	0.895
138	CLTC \| ENST00000472651 \| ABC \| GCB	-1.40	-1.19	-3.14	N/A	86.70	0.895
139	SERF2 \| ENST00000249786 \| ABC \| GCB	-1.63	-1.05	-3.26	N/A	95.98	0.895
140	ARSA \| ENST00000453344 \| ABC \| GCB	-1.28	-1.19	-2.89	N/A	86.14	0.666
141	SERF2 \| ENST00000381359 \| ABC \| GCB	-1.26	-1.05	-2.51	N/A	94.90	0.895
142	FDPS \| ENST00000492244 \| ABC \| GCB	1.54	1.01	2.95	N/A	98.81	0.895
143	ICAM2 \| ENST00000418105 \| ABC \| GCB	-1.31	-1.15	-2.86	N/A	88.04	0.895
144	PDLIM7 \| ENST00000359895 \| ABC \| GCB	-1.31	-1.27	-3.15	N/A	82.77	0.895
145	PSRC1 \| ENST00000369904 \| ABC \| GCB	1.09	1.04	2.23	N/A	95.05	0.895
146	IFT88 \| ENST00000351808 \| ABC \| GCB	1.14	1.02	2.25	N/A	97.38	0.895
147	S100A13 \| ENST00000440685 \| ABC \| GCB	1.88	1.26	4.64	N/A	86.76	0.895
148	SH3GLB2 \| ENST00000372559 \| ABC \| GCB	1.05	1.02	2.12	N/A	97.03	0.895
149	AC074289.1 \| ENST00000413030 \| ABC \| GCB	-1.03	-1.22	-2.49	N/A	82.04	0.895
150	OSBPL10 \| ENST00000466604 \| ABC \| GCB	-1.17	-1.42	-3.21	N/A	76.77	0.895
151	USMG5 \| ENST00000369815 \| ABC \| GCB	1.06	1.21	2.53	N/A	82.83	0.895
152	AHCTF1 \| ENST00000498601 \| ABC \| GCB	-1.18	-1.04	-2.37	N/A	95.20	0.895
153	NR3C1 \| ENST00000343796 \| ABC \| GCB	-1.51	-1.69	-4.81	N/A	74.90	0.895
154	STK17B \| ENST00000420683 \| ABC \| GCB	-3.31	-1.39	-13.76	N/A	88.89	0.895
155	IL6R \| ENST00000344086 \| ABC \| GCB	1.14	1.53	3.36	N/A	74.17	0.895
156	PFKL \| ENST00000491298 \| ABC \| GCB	-1.06	-2.14	-4.46	N/A	66.31	0.895
157	NFKBIL1 \| ENST00000376146 \| ABC \| GCB	-1.14	-1.52	-3.35	N/A	74.34	0.895
158	LRP5L \| ENST00000484509 \| ABC \| GCB	-1.73	-1.13	-3.76	N/A	91.35	0.895
159	SAP30BP \| ENST00000293208 \| ABC \| GCB	-1.01	-1.12	-2.25	N/A	88.13	0.895
160	METTL11A \| ENST00000482347 \| ABC \| GCB	1.11	1.07	2.30	N/A	92.55	0.895