Alternative expression values of the type: Transcript for comparison: ABC_vs

Alternative expression values of the type: Transcript for comparison: ABC_vs_GCB (abs(SI) value > 2)

Distribution of log2 SI values for comparison: ABC_vs_GCB and data type: Transcript

Distribution of all splicing index values that meet the SI cutoff (indicated by red dotted lines) for the feature type: Transcript. The total number of features with SI values exceeding the cutoff, as well as the max and min log2 SI observed are noted in the legend. *If you can not see the figure below, click here

The following table provides a ranked list of alternatively expressed Transcript features for a single pair-wise library comparison. The first column contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, and the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data). The 'SI' column reports the Splicing Index calculated for the feature. The 'Gene FC' column reports the Fold-Change calculated for the entire gene to which the feature belongs. The 'Seq FC' column reports the Fold-Change of the feature itself. The 'Reciprocity' column reports the Reciprocity Index (RI) for the feature. The 'Percent Seq DE' column reports the Percent Feature Contribution (PFC) value for the feature. A description of the purpose and calculation of SI, RI and PFC values can be found in our manuscript. Briefly, the SI value is a measure of the degree of change in expression of a feature (e.g. an exon) between two conditions relative to the change in expression at the gene level. The RI value is a measure of the degree to which the change of the feature is reciprocal in direction to that observed for the gene overall. For example, if an exon is up-regulated but the gene overall is down-regulated, this will give a higher RI value. The PFC value is a measure of the degree of differential expression of the feature compared to the entire gene. For example, if a gene is not changed overall between two conditions, but the feature is highly differentially expressed, this will give a higher PFC value. To sort this table by each of the data values, simply click the column header. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).

RANK	ABC_vs_GCB (Gene \| Feature \| Links)	SI	Gene FC	Seq FC	Reciprocity (RI)	Percent Seq DE (PFC)	q-value
1	ARSA \| ENST00000453344 \| ABC \| GCB	-1.28	-1.19	-2.89	N/A	86.14	0.666
2	MMRN2 \| ENST00000474994 \| ABC \| GCB	2.80	-1.56	4.45	-1.85	77.00	0.666
3	PSMB7 \| ENST00000478817 \| ABC \| GCB	-2.53	1.36	-4.25	-1.54	82.46	0.895
4	PSMB9 \| ENST00000414474 \| ABC \| GCB	-1.56	1.13	-2.61	-1.30	88.43	0.895
5	TMEM214 \| ENST00000404032 \| ABC \| GCB	-1.15	-1.09	-2.42	N/A	91.43	0.895
6	AKAP2 \| ENST00000471798 \| ABC \| GCB	-1.25	-1.21	-2.87	N/A	84.79	0.895
7	DSCR3 \| ENST00000476950 \| ABC \| GCB	1.05	1.13	2.34	N/A	87.30	0.895
8	CCNDBP1 \| ENST00000356633 \| ABC \| GCB	-1.10	1.05	-2.03	-1.16	93.16	0.895
9	YWHAZ \| ENST00000418997 \| ABC \| GCB	-1.35	-1.11	-2.82	N/A	90.78	0.895
10	COMMD6 \| ENST00000355801 \| ABC \| GCB	-1.19	-1.07	-2.43	N/A	93.13	0.895
11	HSPBP1 \| ENST00000433386 \| ABC \| GCB	-1.64	-1.37	-4.28	N/A	82.17	0.895
12	IL12RB1 \| ENST00000221270 \| ABC \| GCB	-1.07	-1.24	-2.60	N/A	81.54	0.895
13	PITPNB \| ENST00000320996 \| ABC \| GCB	-1.33	1.15	-2.18	-1.45	84.40	0.895
14	MGEA5 \| ENST00000439817 \| ABC \| GCB	-1.05	-1.25	-2.58	N/A	80.94	0.895
15	ZCCHC7 \| ENST00000481507 \| ABC \| GCB	-3.42	-1.42	-15.16	N/A	88.58	0.895
16	PVRIG \| ENST00000471803 \| ABC \| GCB	-1.29	-1.37	-3.34	N/A	79.47	0.895
17	UBR3 \| ENST00000484596 \| ABC \| GCB	-1.47	-1.26	-3.49	N/A	84.41	0.895
18	RABGAP1L \| ENST00000367690 \| ABC \| GCB	-1.07	-1.14	-2.39	N/A	86.91	0.895
19	RPL36A \| ENST00000372849 \| ABC \| GCB	-1.89	1.77	-2.09	-8.07	56.19	0.895
20	EIF3D \| ENST00000478547 \| ABC \| GCB	1.13	1.06	2.32	N/A	93.54	0.895
21	RP5-1051J4.2 \| ENST00000313192 \| ABC \| GCB	1.39	-1.31	2.00	-2.25	72.21	0.895
22	ARHGAP24 \| ENST00000395183 \| ABC \| GCB	-2.16	1.81	-2.47	-4.82	60.38	0.895
23	REPIN1 \| ENST00000467980 \| ABC \| GCB	-1.19	-1.12	-2.55	N/A	89.09	0.895
24	AC090774.4 \| ENST00000443508 \| ABC \| GCB	-2.67	2.23	-2.84	-7.69	56.50	0.895
25	LNPEP \| ENST00000395770 \| ABC \| GCB	1.46	1.02	2.81	N/A	97.70	0.895
26	ATXN7L1 \| ENST00000318724 \| ABC \| GCB	1.39	1.22	3.20	N/A	85.22	0.895
27	XAF1 \| ENST00000346752 \| ABC \| GCB	-1.72	1.15	-2.86	-1.31	88.29	0.895
28	TMEM50B \| ENST00000484377 \| ABC \| GCB	-1.21	1.13	-2.05	-1.40	85.77	0.895
29	PPP2R4 \| ENST00000423100 \| ABC \| GCB	-1.01	-1.07	-2.15	N/A	91.81	0.895
30	EEF1D \| ENST00000422753 \| ABC \| GCB	-1.00	-1.28	-2.57	N/A	79.05	0.895
31	NDEL1 \| ENST00000380025 \| ABC \| GCB	-1.08	1.00	-2.11	-1.00	99.86	0.895
32	C17orf45 \| ENST00000487066 \| ABC \| GCB	1.61	1.00	3.05	N/A	99.84	0.895
33	MYL6 \| ENST00000348108 \| ABC \| GCB	-1.02	1.00	-2.02	-1.00	99.82	0.895
34	ELL3 \| ENST00000497700 \| ABC \| GCB	-1.29	-1.36	-3.32	N/A	79.77	0.895
35	TBC1D15 \| ENST00000491063 \| ABC \| GCB	1.57	1.10	3.28	N/A	92.36	0.895
36	SLC41A1 \| ENST00000484228 \| ABC \| GCB	1.63	-1.10	2.80	-1.21	91.19	0.895
37	GOSR2 \| ENST00000225567 \| ABC \| GCB	1.13	1.08	2.36	N/A	92.12	0.895
38	ADD3 \| ENST00000468345 \| ABC \| GCB	1.69	-1.42	2.28	-2.46	70.31	0.895
39	SLC39A1 \| ENST00000368621 \| ABC \| GCB	-1.28	-1.11	-2.69	N/A	90.26	0.895
40	WWC3 \| ENST00000466248 \| ABC \| GCB	1.14	-1.07	2.06	-1.21	91.47	0.895
41	ICAM1 \| ENST00000444336 \| ABC \| GCB	1.24	-1.15	2.05	-1.49	83.55	0.895
42	ITGAE \| ENST00000263087 \| ABC \| GCB	-2.13	1.41	-3.11	-1.86	76.91	0.895
43	TRAC \| ENST00000446106 \| ABC \| GCB	-1.97	-1.21	-4.73	N/A	89.22	0.895
44	CECR5 \| ENST00000486462 \| ABC \| GCB	-1.38	-1.01	-2.61	N/A	99.41	0.895
45	ATP1B1 \| ENST00000367815 \| ABC \| GCB	-2.05	1.17	-3.55	-1.28	89.07	0.895
46	RBM39 \| ENST00000463098 \| ABC \| GCB	1.41	-1.15	2.31	-1.41	85.52	0.895
47	RPL8 \| ENST00000394920 \| ABC \| GCB	1.23	-1.08	2.17	-1.22	90.82	0.895
48	NEDD1 \| ENST00000411739 \| ABC \| GCB	-1.27	1.02	-2.37	-1.04	98.03	0.895
49	URG4 \| ENST00000426198 \| ABC \| GCB	-1.12	-1.20	-2.61	N/A	84.19	0.895
50	PRPSAP2 \| ENST00000441887 \| ABC \| GCB	-3.66	-1.33	-16.80	N/A	90.85	0.895
51	LYRM4 \| ENST00000458438 \| ABC \| GCB	-2.14	1.01	-4.36	-1.02	99.12	0.895
52	HCLS1 \| ENST00000428394 \| ABC \| GCB	1.64	1.05	3.28	N/A	95.72	0.895
53	TREX1 \| ENST00000456089 \| ABC \| GCB	1.40	1.30	3.43	N/A	82.46	0.895
54	ZNF226 \| ENST00000413984 \| ABC \| GCB	1.14	1.03	2.26	N/A	96.77	0.895
55	PNPLA4 \| ENST00000444736 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.96	0.895
56	ABI3BP \| ENST00000466947 \| ABC \| GCB	-1.14	-1.81	-3.98	N/A	69.98	0.895
57	PNPLA4 \| ENST00000442940 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.98	0.895
58	SH3BGRL \| ENST00000463546 \| ABC \| GCB	1.62	-1.26	2.44	-1.69	79.66	0.895
59	AC010746.3 \| ENST00000392308 \| ABC \| GCB	1.02	1.24	2.50	N/A	81.28	0.895
60	SUMO1 \| ENST00000392246 \| ABC \| GCB	-1.97	1.51	-2.59	-2.55	69.64	0.895
61	RP11-371B4.1 \| ENST00000359713 \| ABC \| GCB	1.41	-1.22	2.19	-1.66	80.05	0.895
62	SDHALP2 \| ENST00000455183 \| ABC \| GCB	1.03	1.05	2.13	N/A	94.43	0.895
63	CCDC58 \| ENST00000497726 \| ABC \| GCB	-2.64	2.29	-2.72	-10.74	54.65	0.895
64	PXK \| ENST00000495557 \| ABC \| GCB	-1.16	-1.72	-3.85	N/A	71.31	0.895
65	SMTN \| ENST00000422839 \| ABC \| GCB	2.12	-1.40	3.11	-1.85	77.01	0.895
66	VAMP7 \| ENST00000488344 \| ABC \| GCB	-1.27	1.18	-2.04	-1.61	81.05	0.895
67	MPG \| ENST00000475280 \| ABC \| GCB	-1.95	1.66	-2.33	-3.99	62.54	0.895
68	SDHB \| ENST00000491274 \| ABC \| GCB	1.14	1.29	2.84	N/A	80.50	0.895
69	TMEM14C \| ENST00000466421 \| ABC \| GCB	1.98	1.04	4.08	N/A	97.44	0.895
70	CENPM \| ENST00000396434 \| ABC \| GCB	-1.79	-1.01	-3.52	N/A	98.83	0.895
71	SULF2 \| ENST00000433632 \| ABC \| GCB	1.21	1.64	3.80	N/A	72.92	0.895
72	LRWD1 \| ENST00000476270 \| ABC \| GCB	-1.74	-1.31	-4.38	N/A	84.50	0.895
73	ZNF512 \| ENST00000494548 \| ABC \| GCB	1.52	-1.36	2.10	-2.41	70.77	0.895
74	STK17B \| ENST00000409228 \| ABC \| GCB	-1.66	-1.39	-4.37	N/A	81.82	0.895
75	USP40 \| ENST00000496298 \| ABC \| GCB	-1.23	-1.21	-2.84	N/A	84.72	0.895
76	CAMTA1 \| ENST00000476163 \| ABC \| GCB	-1.18	1.10	-2.05	-1.32	87.87	0.895
77	RP4-694B14.1 \| ENST00000439498 \| ABC \| GCB	1.83	1.18	4.21	N/A	89.45	0.895
78	UBE2E1 \| ENST00000346855 \| ABC \| GCB	1.05	-1.00	2.06	-1.01	99.33	0.895
79	DPM2 \| ENST00000314392 \| ABC \| GCB	-3.04	1.11	-7.43	-1.11	95.15	0.895
80	SPAG1 \| ENST00000251809 \| ABC \| GCB	2.41	-1.39	3.82	-1.65	80.31	0.895
81	RDH14 \| ENST00000468071 \| ABC \| GCB	1.91	-1.02	3.67	-1.04	98.23	0.895
82	ATP6V1E1 \| ENST00000473248 \| ABC \| GCB	-2.38	1.01	-5.16	-1.01	99.62	0.895
83	CREB3L4 \| ENST00000477617 \| ABC \| GCB	1.72	-1.58	2.09	-4.24	61.78	0.895
84	ZFAND5 \| ENST00000343431 \| ABC \| GCB	1.15	1.00	2.23	N/A	99.75	0.895
85	STRBP \| ENST00000348403 \| ABC \| GCB	-1.19	-1.58	-3.61	N/A	73.65	0.895
86	ATP2A1 \| ENST00000395503 \| ABC \| GCB	1.82	-1.43	2.47	-2.32	71.54	0.895
87	LHFPL2 \| ENST00000380345 \| ABC \| GCB	-1.75	-2.17	-7.29	N/A	71.95	0.895
88	EPB41 \| ENST00000488277 \| ABC \| GCB	-1.03	-1.59	-3.24	N/A	71.81	0.895
89	B3GAT1 \| ENST00000392580 \| ABC \| GCB	-1.28	8.26	3.41	N/A	36.74	0.895
90	ZNF668 \| ENST00000442862 \| ABC \| GCB	-1.56	-1.28	-3.77	N/A	84.51	0.895
91	PSMB7 \| ENST00000474081 \| ABC \| GCB	-1.65	1.36	-2.31	-2.16	73.16	0.895
92	SPHK2 \| ENST00000426514 \| ABC \| GCB	-1.32	-1.07	-2.68	N/A	93.26	0.895
93	NT5C2 \| ENST00000470299 \| ABC \| GCB	-1.17	-1.05	-2.36	N/A	94.77	0.895
94	EBP \| ENST00000498425 \| ABC \| GCB	1.19	1.35	3.07	N/A	79.03	0.895
95	CRIP3 \| ENST00000274990 \| ABC \| GCB	-1.28	-1.46	-3.53	N/A	77.05	0.895
96	MSH2 \| ENST00000406134 \| ABC \| GCB	-1.74	1.05	-3.18	-1.09	96.00	0.895
97	PANK2 \| ENST00000399552 \| ABC \| GCB	1.08	1.11	2.34	N/A	89.43	0.895
98	CD72 \| ENST00000463720 \| ABC \| GCB	1.76	1.23	4.19	N/A	87.18	0.895
99	BACH2 \| ENST00000406998 \| ABC \| GCB	-2.08	-1.11	-4.66	N/A	93.86	0.895
100	NFYC \| ENST00000372652 \| ABC \| GCB	-1.20	-1.02	-2.34	N/A	98.01	0.895
101	ARHGAP25 \| ENST00000485700 \| ABC \| GCB	-1.75	1.20	-2.81	-1.42	85.11	0.895
102	NSBP1 \| ENST00000451455 \| ABC \| GCB	-1.14	-2.12	-4.67	N/A	67.24	0.895
103	AGPAT3 \| ENST00000398061 \| ABC \| GCB	-1.31	-1.02	-2.52	N/A	97.99	0.895
104	ELL3 \| ENST00000467869 \| ABC \| GCB	-1.12	-1.36	-2.94	N/A	77.97	0.895
105	BRD2 \| ENST00000495733 \| ABC \| GCB	-1.16	-1.11	-2.47	N/A	90.02	0.895
106	SYS1 \| ENST00000453003 \| ABC \| GCB	1.10	1.07	2.28	N/A	92.81	0.895
107	UNC84A \| ENST00000483996 \| ABC \| GCB	1.23	-1.06	2.23	-1.14	93.72	0.895
108	TLE6 \| ENST00000482627 \| ABC \| GCB	1.33	-1.15	2.19	-1.44	84.83	0.895
109	PIK3AP1 \| ENST00000468783 \| ABC \| GCB	-1.14	-1.37	-3.02	N/A	77.89	0.895
110	TPM4 \| ENST00000344824 \| ABC \| GCB	-1.79	1.41	-2.46	-2.24	72.33	0.895
111	C7orf44 \| ENST00000431651 \| ABC \| GCB	2.00	-1.15	3.46	-1.26	89.69	0.895
112	SLC4A5 \| ENST00000479776 \| ABC \| GCB	1.48	2.35	6.54	N/A	68.77	0.895
113	TCP1 \| ENST00000392168 \| ABC \| GCB	-1.38	1.13	-2.31	-1.34	87.41	0.895
114	SNX8 \| ENST00000419693 \| ABC \| GCB	-3.43	-1.04	-11.16	N/A	98.49	0.895
115	AC002480.6 \| ENST00000325349 \| ABC \| GCB	1.06	1.26	2.62	N/A	80.84	0.895
116	XRCC3 \| ENST00000352127 \| ABC \| GCB	1.67	-1.18	2.70	-1.41	85.56	0.895
117	C3orf1 \| ENST00000493694 \| ABC \| GCB	1.07	1.69	3.55	N/A	70.70	0.895
118	BANK1 \| ENST00000444316 \| ABC \| GCB	-1.25	-1.56	-3.71	N/A	74.69	0.895
119	ZCCHC7 \| ENST00000497924 \| ABC \| GCB	-2.37	-1.42	-7.34	N/A	85.05	0.895
120	AKAP2 \| ENST00000259318 \| ABC \| GCB	-1.78	-1.21	-4.16	N/A	88.30	0.895
121	METTL11A \| ENST00000372483 \| ABC \| GCB	1.19	1.07	2.44	N/A	93.01	0.895
122	RP11-220I1.2 \| ENST00000430809 \| ABC \| GCB	1.40	-1.09	2.41	-1.22	90.86	0.895
123	LA16c-60H5.1 \| ENST00000399898 \| ABC \| GCB	1.35	-1.23	2.07	-1.81	77.66	0.895
124	SYK \| ENST00000375746 \| ABC \| GCB	-1.32	-1.12	-2.81	N/A	89.78	0.895
125	TOP2B \| ENST00000419167 \| ABC \| GCB	-1.07	-1.23	-2.58	N/A	82.03	0.895
126	CCNL2 \| ENST00000488340 \| ABC \| GCB	1.09	-1.06	2.01	-1.18	92.30	0.895
127	CLTC \| ENST00000472651 \| ABC \| GCB	-1.40	-1.19	-3.14	N/A	86.70	0.895
128	SERF2 \| ENST00000249786 \| ABC \| GCB	-1.63	-1.05	-3.26	N/A	95.98	0.895
129	INSIG1 \| ENST00000342407 \| ABC \| GCB	-1.31	1.21	-2.05	-1.72	79.13	0.895
130	SERF2 \| ENST00000381359 \| ABC \| GCB	-1.26	-1.05	-2.51	N/A	94.90	0.895
131	FDPS \| ENST00000492244 \| ABC \| GCB	1.54	1.01	2.95	N/A	98.81	0.895
132	IGHG2 \| ENST00000460164 \| ABC \| GCB	2.70	-1.80	3.61	-2.69	68.62	0.895
133	CREB1 \| ENST00000494983 \| ABC \| GCB	1.33	-1.04	2.41	-1.10	95.41	0.895
134	ZNF415 \| ENST00000421033 \| ABC \| GCB	1.61	-1.12	2.73	-1.25	90.02	0.895
135	ICAM2 \| ENST00000418105 \| ABC \| GCB	-1.31	-1.15	-2.86	N/A	88.04	0.895
136	ZFYVE20 \| ENST00000449964 \| ABC \| GCB	-1.69	1.01	-3.19	-1.02	99.06	0.895
137	PDLIM7 \| ENST00000359895 \| ABC \| GCB	-1.31	-1.27	-3.15	N/A	82.77	0.895
138	ARHGAP24 \| ENST00000395184 \| ABC \| GCB	-2.42	1.81	-2.96	-3.40	64.70	0.895
139	VCAM1 \| ENST00000347652 \| ABC \| GCB	1.11	-1.08	2.01	-1.23	90.56	0.895
140	DHRS4 \| ENST00000397074 \| ABC \| GCB	-1.33	1.01	-2.49	-1.02	99.06	0.895
141	PSRC1 \| ENST00000369904 \| ABC \| GCB	1.09	1.04	2.23	N/A	95.05	0.895
142	IFT88 \| ENST00000351808 \| ABC \| GCB	1.14	1.02	2.25	N/A	97.38	0.895
143	S100A13 \| ENST00000440685 \| ABC \| GCB	1.88	1.26	4.64	N/A	86.76	0.895
144	SH3GLB2 \| ENST00000372559 \| ABC \| GCB	1.05	1.02	2.12	N/A	97.03	0.895
145	NCSTN \| ENST00000424645 \| ABC \| GCB	-1.53	1.10	-2.62	-1.22	90.96	0.895
146	AC074289.1 \| ENST00000413030 \| ABC \| GCB	-1.03	-1.22	-2.49	N/A	82.04	0.895
147	OSBPL10 \| ENST00000466604 \| ABC \| GCB	-1.17	-1.42	-3.21	N/A	76.77	0.895
148	USMG5 \| ENST00000369815 \| ABC \| GCB	1.06	1.21	2.53	N/A	82.83	0.895
149	AHCTF1 \| ENST00000498601 \| ABC \| GCB	-1.18	-1.04	-2.37	N/A	95.20	0.895
150	NR3C1 \| ENST00000343796 \| ABC \| GCB	-1.51	-1.69	-4.81	N/A	74.90	0.895
151	STK17B \| ENST00000420683 \| ABC \| GCB	-3.31	-1.39	-13.76	N/A	88.89	0.895
152	FRMD4A \| ENST00000492155 \| ABC \| GCB	1.09	-1.06	2.02	-1.17	92.67	0.895
153	IL6R \| ENST00000344086 \| ABC \| GCB	1.14	1.53	3.36	N/A	74.17	0.895
154	ERBB2IP \| ENST00000416865 \| ABC \| GCB	-1.51	1.00	-2.84	-1.00	99.93	0.895
155	EXOG \| ENST00000447573 \| ABC \| GCB	-1.52	1.27	-2.25	-1.84	77.12	0.895
156	PFKL \| ENST00000491298 \| ABC \| GCB	-1.06	-2.14	-4.46	N/A	66.31	0.895
157	NFKBIL1 \| ENST00000376146 \| ABC \| GCB	-1.14	-1.52	-3.35	N/A	74.34	0.895
158	LRP5L \| ENST00000484509 \| ABC \| GCB	-1.73	-1.13	-3.76	N/A	91.35	0.895
159	SAP30BP \| ENST00000293208 \| ABC \| GCB	-1.01	-1.12	-2.25	N/A	88.13	0.895
160	METTL11A \| ENST00000482347 \| ABC \| GCB	1.11	1.07	2.30	N/A	92.55	0.895