Alternative expression values of the type: Transcript for comparison: ABC_vs

Alternative expression values of the type: Transcript for comparison: ABC_vs_GCB (abs(SI) value > 2)

Distribution of log2 SI values for comparison: ABC_vs_GCB and data type: Transcript

Distribution of all splicing index values that meet the SI cutoff (indicated by red dotted lines) for the feature type: Transcript. The total number of features with SI values exceeding the cutoff, as well as the max and min log2 SI observed are noted in the legend. *If you can not see the figure below, click here

The following table provides a ranked list of alternatively expressed Transcript features for a single pair-wise library comparison. The first column contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, and the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data). The 'SI' column reports the Splicing Index calculated for the feature. The 'Gene FC' column reports the Fold-Change calculated for the entire gene to which the feature belongs. The 'Seq FC' column reports the Fold-Change of the feature itself. The 'Reciprocity' column reports the Reciprocity Index (RI) for the feature. The 'Percent Seq DE' column reports the Percent Feature Contribution (PFC) value for the feature. A description of the purpose and calculation of SI, RI and PFC values can be found in our manuscript. Briefly, the SI value is a measure of the degree of change in expression of a feature (e.g. an exon) between two conditions relative to the change in expression at the gene level. The RI value is a measure of the degree to which the change of the feature is reciprocal in direction to that observed for the gene overall. For example, if an exon is up-regulated but the gene overall is down-regulated, this will give a higher RI value. The PFC value is a measure of the degree of differential expression of the feature compared to the entire gene. For example, if a gene is not changed overall between two conditions, but the feature is highly differentially expressed, this will give a higher PFC value. To sort this table by each of the data values, simply click the column header. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).

RANK	ABC_vs_GCB (Gene \| Feature \| Links)	SI	Gene FC	Seq FC	Reciprocity (RI)	Percent Seq DE (PFC)	q-value
1	ERBB2IP \| ENST00000416865 \| ABC \| GCB	-1.51	1.00	-2.84	-1.00	99.93	0.895
2	NDEL1 \| ENST00000380025 \| ABC \| GCB	-1.08	1.00	-2.11	-1.00	99.86	0.895
3	C17orf45 \| ENST00000487066 \| ABC \| GCB	1.61	1.00	3.05	N/A	99.84	0.895
4	MYL6 \| ENST00000348108 \| ABC \| GCB	-1.02	1.00	-2.02	-1.00	99.82	0.895
5	ZFAND5 \| ENST00000343431 \| ABC \| GCB	1.15	1.00	2.23	N/A	99.75	0.895
6	ATP6V1E1 \| ENST00000473248 \| ABC \| GCB	-2.38	1.01	-5.16	-1.01	99.62	0.895
7	CECR5 \| ENST00000486462 \| ABC \| GCB	-1.38	-1.01	-2.61	N/A	99.41	0.895
8	UBE2E1 \| ENST00000346855 \| ABC \| GCB	1.05	-1.00	2.06	-1.01	99.33	0.895
9	LYRM4 \| ENST00000458438 \| ABC \| GCB	-2.14	1.01	-4.36	-1.02	99.12	0.895
10	ZFYVE20 \| ENST00000449964 \| ABC \| GCB	-1.69	1.01	-3.19	-1.02	99.06	0.895
11	DHRS4 \| ENST00000397074 \| ABC \| GCB	-1.33	1.01	-2.49	-1.02	99.06	0.895
12	CENPM \| ENST00000396434 \| ABC \| GCB	-1.79	-1.01	-3.52	N/A	98.83	0.895
13	FDPS \| ENST00000492244 \| ABC \| GCB	1.54	1.01	2.95	N/A	98.81	0.895
14	SNX8 \| ENST00000419693 \| ABC \| GCB	-3.43	-1.04	-11.16	N/A	98.49	0.895
15	RDH14 \| ENST00000468071 \| ABC \| GCB	1.91	-1.02	3.67	-1.04	98.23	0.895
16	NEDD1 \| ENST00000411739 \| ABC \| GCB	-1.27	1.02	-2.37	-1.04	98.03	0.895
17	NFYC \| ENST00000372652 \| ABC \| GCB	-1.20	-1.02	-2.34	N/A	98.01	0.895
18	AGPAT3 \| ENST00000398061 \| ABC \| GCB	-1.31	-1.02	-2.52	N/A	97.99	0.895
19	LNPEP \| ENST00000395770 \| ABC \| GCB	1.46	1.02	2.81	N/A	97.70	0.895
20	TMEM14C \| ENST00000466421 \| ABC \| GCB	1.98	1.04	4.08	N/A	97.44	0.895
21	IFT88 \| ENST00000351808 \| ABC \| GCB	1.14	1.02	2.25	N/A	97.38	0.895
22	SH3GLB2 \| ENST00000372559 \| ABC \| GCB	1.05	1.02	2.12	N/A	97.03	0.895
23	ZNF226 \| ENST00000413984 \| ABC \| GCB	1.14	1.03	2.26	N/A	96.77	0.895
24	MSH2 \| ENST00000406134 \| ABC \| GCB	-1.74	1.05	-3.18	-1.09	96.00	0.895
25	SERF2 \| ENST00000249786 \| ABC \| GCB	-1.63	-1.05	-3.26	N/A	95.98	0.895
26	HCLS1 \| ENST00000428394 \| ABC \| GCB	1.64	1.05	3.28	N/A	95.72	0.895
27	CREB1 \| ENST00000494983 \| ABC \| GCB	1.33	-1.04	2.41	-1.10	95.41	0.895
28	AHCTF1 \| ENST00000498601 \| ABC \| GCB	-1.18	-1.04	-2.37	N/A	95.20	0.895
29	DPM2 \| ENST00000314392 \| ABC \| GCB	-3.04	1.11	-7.43	-1.11	95.15	0.895
30	PSRC1 \| ENST00000369904 \| ABC \| GCB	1.09	1.04	2.23	N/A	95.05	0.895
31	SERF2 \| ENST00000381359 \| ABC \| GCB	-1.26	-1.05	-2.51	N/A	94.90	0.895
32	NT5C2 \| ENST00000470299 \| ABC \| GCB	-1.17	-1.05	-2.36	N/A	94.77	0.895
33	SDHALP2 \| ENST00000455183 \| ABC \| GCB	1.03	1.05	2.13	N/A	94.43	0.895
34	BACH2 \| ENST00000406998 \| ABC \| GCB	-2.08	-1.11	-4.66	N/A	93.86	0.895
35	UNC84A \| ENST00000483996 \| ABC \| GCB	1.23	-1.06	2.23	-1.14	93.72	0.895
36	EIF3D \| ENST00000478547 \| ABC \| GCB	1.13	1.06	2.32	N/A	93.54	0.895
37	SPHK2 \| ENST00000426514 \| ABC \| GCB	-1.32	-1.07	-2.68	N/A	93.26	0.895
38	CCNDBP1 \| ENST00000356633 \| ABC \| GCB	-1.10	1.05	-2.03	-1.16	93.16	0.895
39	COMMD6 \| ENST00000355801 \| ABC \| GCB	-1.19	-1.07	-2.43	N/A	93.13	0.895
40	METTL11A \| ENST00000372483 \| ABC \| GCB	1.19	1.07	2.44	N/A	93.01	0.895
41	SYS1 \| ENST00000453003 \| ABC \| GCB	1.10	1.07	2.28	N/A	92.81	0.895
42	FRMD4A \| ENST00000492155 \| ABC \| GCB	1.09	-1.06	2.02	-1.17	92.67	0.895
43	METTL11A \| ENST00000482347 \| ABC \| GCB	1.11	1.07	2.30	N/A	92.55	0.895
44	TBC1D15 \| ENST00000491063 \| ABC \| GCB	1.57	1.10	3.28	N/A	92.36	0.895
45	CCNL2 \| ENST00000488340 \| ABC \| GCB	1.09	-1.06	2.01	-1.18	92.30	0.895
46	GOSR2 \| ENST00000225567 \| ABC \| GCB	1.13	1.08	2.36	N/A	92.12	0.895
47	PPP2R4 \| ENST00000423100 \| ABC \| GCB	-1.01	-1.07	-2.15	N/A	91.81	0.895
48	WWC3 \| ENST00000466248 \| ABC \| GCB	1.14	-1.07	2.06	-1.21	91.47	0.895
49	TMEM214 \| ENST00000404032 \| ABC \| GCB	-1.15	-1.09	-2.42	N/A	91.43	0.895
50	LRP5L \| ENST00000484509 \| ABC \| GCB	-1.73	-1.13	-3.76	N/A	91.35	0.895
51	SLC41A1 \| ENST00000484228 \| ABC \| GCB	1.63	-1.10	2.80	-1.21	91.19	0.895
52	NCSTN \| ENST00000424645 \| ABC \| GCB	-1.53	1.10	-2.62	-1.22	90.96	0.895
53	RP11-220I1.2 \| ENST00000430809 \| ABC \| GCB	1.40	-1.09	2.41	-1.22	90.86	0.895
54	PRPSAP2 \| ENST00000441887 \| ABC \| GCB	-3.66	-1.33	-16.80	N/A	90.85	0.895
55	RPL8 \| ENST00000394920 \| ABC \| GCB	1.23	-1.08	2.17	-1.22	90.82	0.895
56	YWHAZ \| ENST00000418997 \| ABC \| GCB	-1.35	-1.11	-2.82	N/A	90.78	0.895
57	VCAM1 \| ENST00000347652 \| ABC \| GCB	1.11	-1.08	2.01	-1.23	90.56	0.895
58	SLC39A1 \| ENST00000368621 \| ABC \| GCB	-1.28	-1.11	-2.69	N/A	90.26	0.895
59	BRD2 \| ENST00000495733 \| ABC \| GCB	-1.16	-1.11	-2.47	N/A	90.02	0.895
60	ZNF415 \| ENST00000421033 \| ABC \| GCB	1.61	-1.12	2.73	-1.25	90.02	0.895
61	SYK \| ENST00000375746 \| ABC \| GCB	-1.32	-1.12	-2.81	N/A	89.78	0.895
62	C7orf44 \| ENST00000431651 \| ABC \| GCB	2.00	-1.15	3.46	-1.26	89.69	0.895
63	RP4-694B14.1 \| ENST00000439498 \| ABC \| GCB	1.83	1.18	4.21	N/A	89.45	0.895
64	PANK2 \| ENST00000399552 \| ABC \| GCB	1.08	1.11	2.34	N/A	89.43	0.895
65	TRAC \| ENST00000446106 \| ABC \| GCB	-1.97	-1.21	-4.73	N/A	89.22	0.895
66	REPIN1 \| ENST00000467980 \| ABC \| GCB	-1.19	-1.12	-2.55	N/A	89.09	0.895
67	ATP1B1 \| ENST00000367815 \| ABC \| GCB	-2.05	1.17	-3.55	-1.28	89.07	0.895
68	PNPLA4 \| ENST00000442940 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.98	0.895
69	PNPLA4 \| ENST00000444736 \| ABC \| GCB	1.17	-1.09	2.06	-1.28	88.96	0.895
70	STK17B \| ENST00000420683 \| ABC \| GCB	-3.31	-1.39	-13.76	N/A	88.89	0.895
71	ZCCHC7 \| ENST00000481507 \| ABC \| GCB	-3.42	-1.42	-15.16	N/A	88.58	0.895
72	PSMB9 \| ENST00000414474 \| ABC \| GCB	-1.56	1.13	-2.61	-1.30	88.43	0.895
73	AKAP2 \| ENST00000259318 \| ABC \| GCB	-1.78	-1.21	-4.16	N/A	88.30	0.895
74	XAF1 \| ENST00000346752 \| ABC \| GCB	-1.72	1.15	-2.86	-1.31	88.29	0.895
75	SAP30BP \| ENST00000293208 \| ABC \| GCB	-1.01	-1.12	-2.25	N/A	88.13	0.895
76	ICAM2 \| ENST00000418105 \| ABC \| GCB	-1.31	-1.15	-2.86	N/A	88.04	0.895
77	CAMTA1 \| ENST00000476163 \| ABC \| GCB	-1.18	1.10	-2.05	-1.32	87.87	0.895
78	TCP1 \| ENST00000392168 \| ABC \| GCB	-1.38	1.13	-2.31	-1.34	87.41	0.895
79	DSCR3 \| ENST00000476950 \| ABC \| GCB	1.05	1.13	2.34	N/A	87.30	0.895
80	CD72 \| ENST00000463720 \| ABC \| GCB	1.76	1.23	4.19	N/A	87.18	0.895
81	RABGAP1L \| ENST00000367690 \| ABC \| GCB	-1.07	-1.14	-2.39	N/A	86.91	0.895
82	S100A13 \| ENST00000440685 \| ABC \| GCB	1.88	1.26	4.64	N/A	86.76	0.895
83	CLTC \| ENST00000472651 \| ABC \| GCB	-1.40	-1.19	-3.14	N/A	86.70	0.895
84	ARSA \| ENST00000453344 \| ABC \| GCB	-1.28	-1.19	-2.89	N/A	86.14	0.666
85	TMEM50B \| ENST00000484377 \| ABC \| GCB	-1.21	1.13	-2.05	-1.40	85.77	0.895
86	XRCC3 \| ENST00000352127 \| ABC \| GCB	1.67	-1.18	2.70	-1.41	85.56	0.895
87	RBM39 \| ENST00000463098 \| ABC \| GCB	1.41	-1.15	2.31	-1.41	85.52	0.895
88	ATXN7L1 \| ENST00000318724 \| ABC \| GCB	1.39	1.22	3.20	N/A	85.22	0.895
89	ARHGAP25 \| ENST00000485700 \| ABC \| GCB	-1.75	1.20	-2.81	-1.42	85.11	0.895
90	ZCCHC7 \| ENST00000497924 \| ABC \| GCB	-2.37	-1.42	-7.34	N/A	85.05	0.895
91	TLE6 \| ENST00000482627 \| ABC \| GCB	1.33	-1.15	2.19	-1.44	84.83	0.895
92	AKAP2 \| ENST00000471798 \| ABC \| GCB	-1.25	-1.21	-2.87	N/A	84.79	0.895
93	USP40 \| ENST00000496298 \| ABC \| GCB	-1.23	-1.21	-2.84	N/A	84.72	0.895
94	ZNF668 \| ENST00000442862 \| ABC \| GCB	-1.56	-1.28	-3.77	N/A	84.51	0.895
95	LRWD1 \| ENST00000476270 \| ABC \| GCB	-1.74	-1.31	-4.38	N/A	84.50	0.895
96	UBR3 \| ENST00000484596 \| ABC \| GCB	-1.47	-1.26	-3.49	N/A	84.41	0.895
97	PITPNB \| ENST00000320996 \| ABC \| GCB	-1.33	1.15	-2.18	-1.45	84.40	0.895
98	URG4 \| ENST00000426198 \| ABC \| GCB	-1.12	-1.20	-2.61	N/A	84.19	0.895
99	ICAM1 \| ENST00000444336 \| ABC \| GCB	1.24	-1.15	2.05	-1.49	83.55	0.895
100	USMG5 \| ENST00000369815 \| ABC \| GCB	1.06	1.21	2.53	N/A	82.83	0.895
101	PDLIM7 \| ENST00000359895 \| ABC \| GCB	-1.31	-1.27	-3.15	N/A	82.77	0.895
102	PSMB7 \| ENST00000478817 \| ABC \| GCB	-2.53	1.36	-4.25	-1.54	82.46	0.895
103	TREX1 \| ENST00000456089 \| ABC \| GCB	1.40	1.30	3.43	N/A	82.46	0.895
104	HSPBP1 \| ENST00000433386 \| ABC \| GCB	-1.64	-1.37	-4.28	N/A	82.17	0.895
105	AC074289.1 \| ENST00000413030 \| ABC \| GCB	-1.03	-1.22	-2.49	N/A	82.04	0.895
106	TOP2B \| ENST00000419167 \| ABC \| GCB	-1.07	-1.23	-2.58	N/A	82.03	0.895
107	STK17B \| ENST00000409228 \| ABC \| GCB	-1.66	-1.39	-4.37	N/A	81.82	0.895
108	IL12RB1 \| ENST00000221270 \| ABC \| GCB	-1.07	-1.24	-2.60	N/A	81.54	0.895
109	AC010746.3 \| ENST00000392308 \| ABC \| GCB	1.02	1.24	2.50	N/A	81.28	0.895
110	VAMP7 \| ENST00000488344 \| ABC \| GCB	-1.27	1.18	-2.04	-1.61	81.05	0.895
111	MGEA5 \| ENST00000439817 \| ABC \| GCB	-1.05	-1.25	-2.58	N/A	80.94	0.895
112	AC002480.6 \| ENST00000325349 \| ABC \| GCB	1.06	1.26	2.62	N/A	80.84	0.895
113	SDHB \| ENST00000491274 \| ABC \| GCB	1.14	1.29	2.84	N/A	80.50	0.895
114	SPAG1 \| ENST00000251809 \| ABC \| GCB	2.41	-1.39	3.82	-1.65	80.31	0.895
115	RP11-371B4.1 \| ENST00000359713 \| ABC \| GCB	1.41	-1.22	2.19	-1.66	80.05	0.895
116	ELL3 \| ENST00000497700 \| ABC \| GCB	-1.29	-1.36	-3.32	N/A	79.77	0.895
117	SH3BGRL \| ENST00000463546 \| ABC \| GCB	1.62	-1.26	2.44	-1.69	79.66	0.895
118	PVRIG \| ENST00000471803 \| ABC \| GCB	-1.29	-1.37	-3.34	N/A	79.47	0.895
119	INSIG1 \| ENST00000342407 \| ABC \| GCB	-1.31	1.21	-2.05	-1.72	79.13	0.895
120	EEF1D \| ENST00000422753 \| ABC \| GCB	-1.00	-1.28	-2.57	N/A	79.05	0.895
121	EBP \| ENST00000498425 \| ABC \| GCB	1.19	1.35	3.07	N/A	79.03	0.895
122	ELL3 \| ENST00000467869 \| ABC \| GCB	-1.12	-1.36	-2.94	N/A	77.97	0.895
123	PIK3AP1 \| ENST00000468783 \| ABC \| GCB	-1.14	-1.37	-3.02	N/A	77.89	0.895
124	LA16c-60H5.1 \| ENST00000399898 \| ABC \| GCB	1.35	-1.23	2.07	-1.81	77.66	0.895
125	EXOG \| ENST00000447573 \| ABC \| GCB	-1.52	1.27	-2.25	-1.84	77.12	0.895
126	CRIP3 \| ENST00000274990 \| ABC \| GCB	-1.28	-1.46	-3.53	N/A	77.05	0.895
127	SMTN \| ENST00000422839 \| ABC \| GCB	2.12	-1.40	3.11	-1.85	77.01	0.895
128	MMRN2 \| ENST00000474994 \| ABC \| GCB	2.80	-1.56	4.45	-1.85	77.00	0.666
129	ITGAE \| ENST00000263087 \| ABC \| GCB	-2.13	1.41	-3.11	-1.86	76.91	0.895
130	OSBPL10 \| ENST00000466604 \| ABC \| GCB	-1.17	-1.42	-3.21	N/A	76.77	0.895
131	NR3C1 \| ENST00000343796 \| ABC \| GCB	-1.51	-1.69	-4.81	N/A	74.90	0.895
132	BANK1 \| ENST00000444316 \| ABC \| GCB	-1.25	-1.56	-3.71	N/A	74.69	0.895
133	NFKBIL1 \| ENST00000376146 \| ABC \| GCB	-1.14	-1.52	-3.35	N/A	74.34	0.895
134	IL6R \| ENST00000344086 \| ABC \| GCB	1.14	1.53	3.36	N/A	74.17	0.895
135	STRBP \| ENST00000348403 \| ABC \| GCB	-1.19	-1.58	-3.61	N/A	73.65	0.895
136	PSMB7 \| ENST00000474081 \| ABC \| GCB	-1.65	1.36	-2.31	-2.16	73.16	0.895
137	SULF2 \| ENST00000433632 \| ABC \| GCB	1.21	1.64	3.80	N/A	72.92	0.895
138	TPM4 \| ENST00000344824 \| ABC \| GCB	-1.79	1.41	-2.46	-2.24	72.33	0.895
139	RP5-1051J4.2 \| ENST00000313192 \| ABC \| GCB	1.39	-1.31	2.00	-2.25	72.21	0.895
140	LHFPL2 \| ENST00000380345 \| ABC \| GCB	-1.75	-2.17	-7.29	N/A	71.95	0.895
141	EPB41 \| ENST00000488277 \| ABC \| GCB	-1.03	-1.59	-3.24	N/A	71.81	0.895
142	ATP2A1 \| ENST00000395503 \| ABC \| GCB	1.82	-1.43	2.47	-2.32	71.54	0.895
143	PXK \| ENST00000495557 \| ABC \| GCB	-1.16	-1.72	-3.85	N/A	71.31	0.895
144	ZNF512 \| ENST00000494548 \| ABC \| GCB	1.52	-1.36	2.10	-2.41	70.77	0.895
145	C3orf1 \| ENST00000493694 \| ABC \| GCB	1.07	1.69	3.55	N/A	70.70	0.895
146	ADD3 \| ENST00000468345 \| ABC \| GCB	1.69	-1.42	2.28	-2.46	70.31	0.895
147	ABI3BP \| ENST00000466947 \| ABC \| GCB	-1.14	-1.81	-3.98	N/A	69.98	0.895
148	SUMO1 \| ENST00000392246 \| ABC \| GCB	-1.97	1.51	-2.59	-2.55	69.64	0.895
149	SLC4A5 \| ENST00000479776 \| ABC \| GCB	1.48	2.35	6.54	N/A	68.77	0.895
150	IGHG2 \| ENST00000460164 \| ABC \| GCB	2.70	-1.80	3.61	-2.69	68.62	0.895
151	NSBP1 \| ENST00000451455 \| ABC \| GCB	-1.14	-2.12	-4.67	N/A	67.24	0.895
152	PFKL \| ENST00000491298 \| ABC \| GCB	-1.06	-2.14	-4.46	N/A	66.31	0.895
153	ARHGAP24 \| ENST00000395184 \| ABC \| GCB	-2.42	1.81	-2.96	-3.40	64.70	0.895
154	MPG \| ENST00000475280 \| ABC \| GCB	-1.95	1.66	-2.33	-3.99	62.54	0.895
155	CREB3L4 \| ENST00000477617 \| ABC \| GCB	1.72	-1.58	2.09	-4.24	61.78	0.895
156	ARHGAP24 \| ENST00000395183 \| ABC \| GCB	-2.16	1.81	-2.47	-4.82	60.38	0.895
157	AC090774.4 \| ENST00000443508 \| ABC \| GCB	-2.67	2.23	-2.84	-7.69	56.50	0.895
158	RPL36A \| ENST00000372849 \| ABC \| GCB	-1.89	1.77	-2.09	-8.07	56.19	0.895
159	CCDC58 \| ENST00000497726 \| ABC \| GCB	-2.64	2.29	-2.72	-10.74	54.65	0.895
160	B3GAT1 \| ENST00000392580 \| ABC \| GCB	-1.28	8.26	3.41	N/A	36.74	0.895