Summary page for 'AL731546.4' (ENSG00000209535) - Project: MultipleMyeloma


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Basic Gene Stats

Species: Human
Gene Name: 'AL731546.4' (HUGO: N/A)
ALEXA Gene ID: 25237 (ALEXA_hs_53_36o)
EnsEMBL Gene ID: ENSG00000209535
Entrez Gene Record(s): N/A
Ensembl Gene Record: ENSG00000209535
Evidence: Unknown Gene
Gene Type: rRNA_pseudogene
Location: chr10 26142744-26142852 (-): N/A
Size (bp): 109
Description: NA



Data links for each library (displays expression data in UCSC Genome Browser)

PreTx_Un (0 total reads for 'AL731546.4'). UCSC data links: (C | P)
PostTx_Un (0 total reads for 'AL731546.4'). UCSC data links: (C | P)
PreTx_En (0 total reads for 'AL731546.4'). UCSC data links: (C | P)
PostTx_En (0 total reads for 'AL731546.4'). UCSC data links: (C | P)



Link to other genes in the same chromosome region as 'AL731546.4'

chr10_1



Features defined for this gene: 21

Gene: 1
Transcript: 1
ExonRegion: 1
Intergenic: 1
ActiveIntergenicRegion: 8
SilentIntergenicRegion: 10



Summary of transcript specific features for 'AL731546.4' (ENSG00000209535)

ENST00000386800:ER1a


Summary of known expressed features

Expressed above background

LibraryExon Regions
(Expressed/Total)
Known Junctions
(Expressed/Total)
PreTx_Un:0/10/0
PostTx_Un:0/10/0
PreTx_En:0/10/0
PostTx_En:0/10/0

Detected at any level above 0

LibraryExon Regions
(Detected/Total)
Known Junctions
(Detected/Total)
PreTx_Un:0/10/0
PostTx_Un:0/10/0
PreTx_En:0/10/0
PostTx_En:0/10/0


Normalized expression data for each known or novel expressed feature of 'AL731546.4'

The following table summarizes the expression values of all known features of the gene 'AL731546.4' in each library. Known features (i.e. those that correspond to one or more EnsEMBL transcripts) are included regardless of their expression level. Novel features are only reported in this table if they are expressed above the level of intergenic background noise. The 'FID' column reports the unique Feature ID for the gene, transcript, exon region, exon junction, etc. The 'Name' column reports the Feature Name for the feature (e.g. E5a_E6a is the name of an exon junction corresponding to the connection of exons 5 and 6). The 'Type' column reports the type of the feature and may be one of the following: Gene, Transcript, Exon Region, Known Junction, Novel Junction, Known Boundary, Novel Boundary, Silent or Active Intronic Regions, and Silent or Active Intergenic Regions (see our manuscript for more details). The 'Base Count' column reports the number of nucleotide bases for the feature followed by the percent of these that do NOT correspond to repeats and the percent that are known to be protein coding in one or more EnsEMBL transcripts. The 'Supporting ESTs/mRNAs' column reports the number of ESTs and mRNAs that when aligned to the human genome support the expression of a feature (i.e. the sequence alignment coordinates match an exon junction or boundaries of an exon, retained intron, etc.). The 'Conserved Species' column reports the number of 'other' species for which there was at least 1 supporting EST/mRNA alignment. Finally, the remaining columns report the log2 expression value for each feature in each library. Bold values indicate expression above background. Each expression value is also a hyperlink to a view of the feature's corresponding genomic region in the UCSC genome browser. Expression data will automatically be loaded as custom GFF and wiggle tracks.


FIDNameTypeBase Count
(% unmasked |
% coding)
Supporting
Human
ESTs/mRNAs
Conserved
Species
PreTx_Un Log2
Expression
PostTx_Un Log2
Expression
PreTx_En Log2
Expression
PostTx_En Log2
Expression
G25237AL731546.4Gene109 (1% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
T50207ENST00000386800Transcript109 (1% | 0%)N/AN/A0.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)
ER10335ER1aExonRegion109 (1% | 0%)000.00 (C | P)0.00 (C | P)0.00 (C | P)0.00 (C | P)


Figures displaying gene and feature expression levels in each library

Insufficient data to create figures