Distributions and lists of all significant differential expression values of the type: SilentIntergenicRegion for comparisons: AR_KnockIn_vs_C42 (p-value < 0.05 after multiple testing correction and Fold-Change > 1.5)


Distribution of log2 differential expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion

Distribution of all differential expression values that meet the p-value and fold-change cutoff for the feature type: SilentIntergenicRegion. The total number of significant DE features, as well as the max and min log2 DE observed are noted in the legend. *If you can not see the figure below, click here




Scatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion

Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntergenicRegion. Features that are differentially expressed (meet the p-value and fold-change cutoff) are indicated in magenta. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.

Scatter plot of expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion




SmoothScatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion

Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntergenicRegion. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.

SmoothScatter plot of expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion




Significant differentially expressed SilentIntergenicRegion features

The following table provides a ranked list of all significant differentially expressed SilentIntergenicRegion features. Each column corresponds to a pair-wise comparison of two libraries. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the fold-change (FC) of the differential expression event, and the multiple testing corrected p-value for the feature. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).


RANKAR_KnockIn_vs_C42 (Gene | Feature | Links | Values)
1 AL078639.5 CDR1 | IG27_SR6 | (AR_KnockIn) | (C42) | FC = -45.98 | q.value = 1.06e-17
2 CDR1 hsa-mir-320d-2 | IG28_SR1 | (AR_KnockIn) | (C42) | FC = -45.76 | q.value = 2.58e-21
3 AL078639.5 CDR1 | IG27_SR5 | (AR_KnockIn) | (C42) | FC = -44.68 | q.value = 4.29e-22
4 RP1-177G6.2 AL078639.5 | IG26_SR11 | (AR_KnockIn) | (C42) | FC = -24.29 | q.value = 6.91e-10
5 RP1-177G6.2 AL078639.5 | IG26_SR10 | (AR_KnockIn) | (C42) | FC = -20.37 | q.value = 1.42e-07
6 DSC3 DSC2 | IG45_SR3 | (AR_KnockIn) | (C42) | FC = 20.29 | q.value = 3.1e-11
7 AC063977.6 ETFB | IG33_SR3 | (AR_KnockIn) | (C42) | FC = -18.43 | q.value = 1.27e-13
8 KIAA1257 CCDC48 | IG49_SR3 | (AR_KnockIn) | (C42) | FC = -17.19 | q.value = 2.24e-16
9 DPP4 GCG | IG39_SR1 | (AR_KnockIn) | (C42) | FC = -16.66 | q.value = 2.02e-06
10 AL078639.5 CDR1 | IG27_SR2 | (AR_KnockIn) | (C42) | FC = -16.43 | q.value = 5.52e-05
11 AC140134.2 AC146944.1 | IG23_SR31 | (AR_KnockIn) | (C42) | FC = 16.32 | q.value = 0.000432
12 DPP4 GCG | IG39_SR2 | (AR_KnockIn) | (C42) | FC = -14.73 | q.value = 2.6e-05
13 DSC3 DSC2 | IG45_SR2 | (AR_KnockIn) | (C42) | FC = 14.60 | q.value = 2.47e-05
14 DSC3 DSC2 | IG45_SR4 | (AR_KnockIn) | (C42) | FC = 14.21 | q.value = 7.65e-10
15 DCN BTG1 | IG42_SR6 | (AR_KnockIn) | (C42) | FC = 13.65 | q.value = 3.3e-11
16 AL078639.5 CDR1 | IG27_SR1 | (AR_KnockIn) | (C42) | FC = -12.49 | q.value = 0.000278
17 Y_RNA TMEM132C | IG41_SR30 | (AR_KnockIn) | (C42) | FC = -12.16 | q.value = 0.0015
18 CWC22 UBE2E3 | IG5_SR9 | (AR_KnockIn) | (C42) | FC = 11.79 | q.value = 9.25e-06
19 AL078639.5 CDR1 | IG27_SR4 | (AR_KnockIn) | (C42) | FC = -11.44 | q.value = 0.000278
20 CDR1 hsa-mir-320d-2 | IG28_SR2 | (AR_KnockIn) | (C42) | FC = -11.32 | q.value = 0.0015
21 AL078639.5 CDR1 | IG27_SR3 | (AR_KnockIn) | (C42) | FC = -11.12 | q.value = 0.0032
22 hsa-mir-216b CCDC85A | IG48_SR13 | (AR_KnockIn) | (C42) | FC = -10.65 | q.value = 0.000645
23 Y_RNA TMEM132C | IG41_SR29 | (AR_KnockIn) | (C42) | FC = -10.13 | q.value = 0.00688
24 AC023943.6 API5 | IG17_SR8 | (AR_KnockIn) | (C42) | FC = 9.89 | q.value = 0.021
25 SLC4A10 DPP4 | IG38_SR5 | (AR_KnockIn) | (C42) | FC = -9.21 | q.value = 0.00688
26 AC069218.13 NAALADL2 | IG39_SR32 | (AR_KnockIn) | (C42) | FC = 9.11 | q.value = 0.00258
27 SNORA25 U6 | IG11_SR11 | (AR_KnockIn) | (C42) | FC = -9.10 | q.value = 0.0154
28 AGRP FAM65A | IG47_SR4 | (AR_KnockIn) | (C42) | FC = 8.68 | q.value = 0.0324
29 CWC22 UBE2E3 | IG5_SR13 | (AR_KnockIn) | (C42) | FC = 8.62 | q.value = 0.000114
30 SNORA25 U6 | IG11_SR9 | (AR_KnockIn) | (C42) | FC = -8.60 | q.value = 0.00688
31 AC069218.13 NAALADL2 | IG39_SR31 | (AR_KnockIn) | (C42) | FC = 8.56 | q.value = 2.82e-05
32 AC069218.13 NAALADL2 | IG39_SR30 | (AR_KnockIn) | (C42) | FC = 8.36 | q.value = 0.00258
33 CWC22 UBE2E3 | IG5_SR8 | (AR_KnockIn) | (C42) | FC = 8.24 | q.value = 0.0154
34 KLHL1 U6 | IG22_SR8 | (AR_KnockIn) | (C42) | FC = 8.08 | q.value = 0.0324
35 hsa-mir-216b CCDC85A | IG48_SR15 | (AR_KnockIn) | (C42) | FC = -7.72 | q.value = 1.01e-05
36 CWC22 UBE2E3 | IG5_SR12 | (AR_KnockIn) | (C42) | FC = 7.70 | q.value = 0.00166
37 AC069218.13 NAALADL2 | IG39_SR28 | (AR_KnockIn) | (C42) | FC = 7.68 | q.value = 0.0135
38 hsa-mir-216b CCDC85A | IG48_SR12 | (AR_KnockIn) | (C42) | FC = -7.64 | q.value = 3.94e-05
39 AC069218.13 NAALADL2 | IG39_SR29 | (AR_KnockIn) | (C42) | FC = 7.58 | q.value = 0.0161
40 SNORA25 U6 | IG11_SR10 | (AR_KnockIn) | (C42) | FC = -7.53 | q.value = 0.0315
41 GPRIN3 SNCA | IG22_SR15 | (AR_KnockIn) | (C42) | FC = 7.31 | q.value = 0.0154
42 GPRIN3 SNCA | IG22_SR12 | (AR_KnockIn) | (C42) | FC = 7.22 | q.value = 4.32e-06
43 CWC22 UBE2E3 | IG5_SR14 | (AR_KnockIn) | (C42) | FC = 6.97 | q.value = 0.000168
44 BHLHA15 AC091654.4 | IG32_SR2 | (AR_KnockIn) | (C42) | FC = -6.51 | q.value = 1.26e-36
45 BHLHA15 AC091654.4 | IG32_SR1 | (AR_KnockIn) | (C42) | FC = -6.44 | q.value = 1.71e-29
46 hsa-mir-216b CCDC85A | IG48_SR14 | (AR_KnockIn) | (C42) | FC = -6.37 | q.value = 2.84e-05
47 AL356957.27 AL356957.27 | IG34_SR2 | (AR_KnockIn) | (C42) | FC = 6.36 | q.value = 0.00375
48 MAGEA10 GABRA3 | IG46_SR2 | (AR_KnockIn) | (C42) | FC = -6.23 | q.value = 0.00352
49 SNORA42 TTC6 | IG49_SR3 | (AR_KnockIn) | (C42) | FC = 6.04 | q.value = 5.11e-05
50 C15orf32 FAM174B | IG47_SR7 | (AR_KnockIn) | (C42) | FC = -5.95 | q.value = 0.00163
51 GPRIN3 SNCA | IG22_SR14 | (AR_KnockIn) | (C42) | FC = 5.93 | q.value = 0.0232
52 CYorf15A CYorf15B | IG24_SR1 | (AR_KnockIn) | (C42) | FC = 5.88 | q.value = 1.82e-06
53 PACSIN1 SPDEF | IG19_SR1 | (AR_KnockIn) | (C42) | FC = -5.72 | q.value = 0.0314
54 GPC6 DCT | IG26_SR1 | (AR_KnockIn) | (C42) | FC = -5.68 | q.value = 0.0455
55 GATA2 C3orf27 | IG42_SR2 | (AR_KnockIn) | (C42) | FC = -5.62 | q.value = 2.12e-12
56 C15orf32 FAM174B | IG47_SR8 | (AR_KnockIn) | (C42) | FC = -5.51 | q.value = 0.0155
57 AC069218.13 NAALADL2 | IG39_SR26 | (AR_KnockIn) | (C42) | FC = 5.50 | q.value = 0.0433
58 TUSC1 AL356791.9 | IG24_SR1 | (AR_KnockIn) | (C42) | FC = -5.48 | q.value = 0.0314
59 RP11-666A1.4 NBPF15 | IG6_SR4 | (AR_KnockIn) | (C42) | FC = 5.48 | q.value = 0.0232
60 hsa-mir-216b CCDC85A | IG48_SR16 | (AR_KnockIn) | (C42) | FC = -5.48 | q.value = 0.0089
61 SLC35F5 | IG1_SR4 | (AR_KnockIn) | (C42) | FC = 5.46 | q.value = 0.0143
62 C19orf50 UBA52 | IG19_SR2 | (AR_KnockIn) | (C42) | FC = -5.44 | q.value = 0.0263
63 CWC22 UBE2E3 | IG5_SR15 | (AR_KnockIn) | (C42) | FC = 5.44 | q.value = 0.00493
64 AL356957.27 AL356957.27 | IG34_SR6 | (AR_KnockIn) | (C42) | FC = 5.20 | q.value = 0.0346
65 TRIM24 SVOPL | IG6_SR1 | (AR_KnockIn) | (C42) | FC = -5.07 | q.value = 0.0314
66 CYorf15A CYorf15B | IG24_SR2 | (AR_KnockIn) | (C42) | FC = 4.95 | q.value = 0.00076
67 RABL5 EMID2 | IG25_SR4 | (AR_KnockIn) | (C42) | FC = -4.86 | q.value = 0.00302
68 PFN1 ENO3 | IG3_SR1 | (AR_KnockIn) | (C42) | FC = -4.84 | q.value = 0.0263
69 PTPRE MKI67 | IG4_SR2 | (AR_KnockIn) | (C42) | FC = -4.79 | q.value = 0.0258
70 FOXA1 SNORA42 | IG48_SR10 | (AR_KnockIn) | (C42) | FC = 4.68 | q.value = 0.0236
71 SH2D1A ODZ1 | IG38_SR3 | (AR_KnockIn) | (C42) | FC = -4.65 | q.value = 3.73e-12
72 AC012621.2 C16orf62 | IG48_SR1 | (AR_KnockIn) | (C42) | FC = -4.64 | q.value = 0.0433
73 SNORA42 TTC6 | IG49_SR6 | (AR_KnockIn) | (C42) | FC = 4.56 | q.value = 0.00843
74 FOXA1 SNORA42 | IG48_SR16 | (AR_KnockIn) | (C42) | FC = 4.56 | q.value = 0.0433
75 RPL14 ZNF619 | IG30_SR2 | (AR_KnockIn) | (C42) | FC = 4.53 | q.value = 0.000168
76 DNAJC22 SPATS2 | IG43_SR1 | (AR_KnockIn) | (C42) | FC = -4.53 | q.value = 2.34e-09
77 MFSD3 RECQL4 | IG24_SR1 | (AR_KnockIn) | (C42) | FC = -4.49 | q.value = 0.0455
78 PNPLA2 EFCAB4A | IG36_SR3 | (AR_KnockIn) | (C42) | FC = -4.48 | q.value = 0.0267
79 SNORA42 TTC6 | IG49_SR2 | (AR_KnockIn) | (C42) | FC = 4.47 | q.value = 0.00263
80 RBP5 CLSTN3 | IG48_SR2 | (AR_KnockIn) | (C42) | FC = -4.47 | q.value = 0.00868
81 AC011499.5 DUS3L | IG16_SR1 | (AR_KnockIn) | (C42) | FC = -4.42 | q.value = 0.0433
82 NVL AC092809.2 | IG4_SR1 | (AR_KnockIn) | (C42) | FC = -4.33 | q.value = 0.00564
83 ZNF14 ZNF506 | IG3_SR19 | (AR_KnockIn) | (C42) | FC = 4.27 | q.value = 0.000168
84 BANK1 SLC39A8 | IG20_SR3 | (AR_KnockIn) | (C42) | FC = -4.21 | q.value = 0.00507
85 TMEM78 AL162595.17 | IG48_SR2 | (AR_KnockIn) | (C42) | FC = -4.18 | q.value = 5.24e-05
86 MRPL12 SLC25A10 | IG36_SR1 | (AR_KnockIn) | (C42) | FC = -4.11 | q.value = 0.00275
87 POTEB AC126335.16 | IG31_SR3 | (AR_KnockIn) | (C42) | FC = 4.05 | q.value = 1.05e-05
88 LUC7L2 KLRG2 | IG16_SR5 | (AR_KnockIn) | (C42) | FC = -3.97 | q.value = 0.00237
89 SNRPN SNORD64 | IG59_SR3 | (AR_KnockIn) | (C42) | FC = 3.97 | q.value = 0.0135
90 AL022316.2 | IG1_SR3 | (AR_KnockIn) | (C42) | FC = -3.94 | q.value = 0.000432
91 C9orf86 PHPT1 | IG48_SR4 | (AR_KnockIn) | (C42) | FC = -3.80 | q.value = 0.0407
92 AC099552.4 INSIG1 | IG33_SR8 | (AR_KnockIn) | (C42) | FC = -3.80 | q.value = 7.11e-05
93 SLC4A2 FASTK | IG41_SR1 | (AR_KnockIn) | (C42) | FC = -3.73 | q.value = 0.0371
94 TXN2 FOXRED2 | IG14_SR3 | (AR_KnockIn) | (C42) | FC = -3.73 | q.value = 1.24e-50
95 MAGEA5 MAGEA10 | IG45_SR3 | (AR_KnockIn) | (C42) | FC = 3.70 | q.value = 6.47e-05
96 U6 AC093392.4 | IG12_SR2 | (AR_KnockIn) | (C42) | FC = 3.63 | q.value = 0.0135
97 SNRPN SNORD64 | IG59_SR4 | (AR_KnockIn) | (C42) | FC = 3.56 | q.value = 0.00688
98 FAM83F TNRC6B | IG2_SR4 | (AR_KnockIn) | (C42) | FC = -3.55 | q.value = 0.0217
99 GATA2 C3orf27 | IG42_SR3 | (AR_KnockIn) | (C42) | FC = -3.54 | q.value = 0.000242
100 AC037450.6 MMP16 | IG18_SR1 | (AR_KnockIn) | (C42) | FC = 3.51 | q.value = 7.67e-09
101 RP11-233E12.2 PRMT6 | IG32_SR9 | (AR_KnockIn) | (C42) | FC = -3.50 | q.value = 0.00356
102 AC037450.6 MMP16 | IG18_SR2 | (AR_KnockIn) | (C42) | FC = 3.35 | q.value = 2.5e-07
103 MAP7 MAP3K5 | IG5_SR1 | (AR_KnockIn) | (C42) | FC = -3.26 | q.value = 0.000278
104 IL17RA CECR6 | IG63_SR3 | (AR_KnockIn) | (C42) | FC = -3.24 | q.value = 0.0217
105 SNORD64 SNORD116 | IG60_SR1 | (AR_KnockIn) | (C42) | FC = 3.23 | q.value = 0.00333
106 U6 AC068446.22 | IG29_SR4 | (AR_KnockIn) | (C42) | FC = 3.20 | q.value = 0.037
107 KIAA1370 ONECUT1 | IG12_SR15 | (AR_KnockIn) | (C42) | FC = 3.11 | q.value = 0.0363
108 MOSC1 U6atac | IG17_SR5 | (AR_KnockIn) | (C42) | FC = -3.10 | q.value = 0.0444
109 SNORD116 SNORD115 | IG13_SR8 | (AR_KnockIn) | (C42) | FC = 3.05 | q.value = 0.0499
110 U6 AC068446.22 | IG29_SR3 | (AR_KnockIn) | (C42) | FC = 3.02 | q.value = 0.0473
111 SNORD64 SNORD116 | IG60_SR5 | (AR_KnockIn) | (C42) | FC = 3.01 | q.value = 0.00211
112 AC114940.2 EFNA5 | IG42_SR17 | (AR_KnockIn) | (C42) | FC = 2.95 | q.value = 2.4e-15
113 SNORD64 SNORD116 | IG60_SR2 | (AR_KnockIn) | (C42) | FC = 2.95 | q.value = 0.000317
114 SNORD64 SNORD116 | IG60_SR18 | (AR_KnockIn) | (C42) | FC = 2.93 | q.value = 0.00385
115 NAALADL2 AC092920.7 | IG40_SR1 | (AR_KnockIn) | (C42) | FC = 2.92 | q.value = 0.0185
116 AC084851.2 FOLH1 | IG44_SR3 | (AR_KnockIn) | (C42) | FC = 2.89 | q.value = 3.46e-05
117 RP11-402G3.4 TNFSF15 | IG24_SR4 | (AR_KnockIn) | (C42) | FC = 2.88 | q.value = 0.0449
118 TXN2 FOXRED2 | IG14_SR4 | (AR_KnockIn) | (C42) | FC = -2.84 | q.value = 1.71e-29
119 U6 AC068446.22 | IG29_SR5 | (AR_KnockIn) | (C42) | FC = 2.84 | q.value = 0.0433
120 ZNF426 ZNF121 | IG9_SR4 | (AR_KnockIn) | (C42) | FC = 2.80 | q.value = 0.00189
121 SNORA42 TTC6 | IG49_SR9 | (AR_KnockIn) | (C42) | FC = 2.79 | q.value = 9.54e-08
122 HIST1H2BI HIST1H4H | IG4_SR3 | (AR_KnockIn) | (C42) | FC = 2.79 | q.value = 0.00842
123 RP11-402G3.4 TNFSF15 | IG24_SR3 | (AR_KnockIn) | (C42) | FC = 2.74 | q.value = 0.028
124 SNORA42 TTC6 | IG49_SR10 | (AR_KnockIn) | (C42) | FC = 2.68 | q.value = 3.22e-07
125 GNA11 GNA15 | IG9_SR1 | (AR_KnockIn) | (C42) | FC = -2.64 | q.value = 1.65e-05
126 SNORD64 SNORD116 | IG60_SR17 | (AR_KnockIn) | (C42) | FC = 2.62 | q.value = 0.0403
127 SNORD64 SNORD116 | IG60_SR4 | (AR_KnockIn) | (C42) | FC = 2.62 | q.value = 0.000213
128 SNORD64 SNORD116 | IG60_SR3 | (AR_KnockIn) | (C42) | FC = 2.61 | q.value = 0.000741
129 RPL14 ZNF619 | IG30_SR1 | (AR_KnockIn) | (C42) | FC = 2.61 | q.value = 0.021
130 XPNPEP3 RBX1 | IG10_SR1 | (AR_KnockIn) | (C42) | FC = 2.59 | q.value = 0.0135
131 ALOX15B ALOX12B | IG43_SR2 | (AR_KnockIn) | (C42) | FC = -2.55 | q.value = 0.00842
132 SLC6A11 SLC6A1 | IG12_SR1 | (AR_KnockIn) | (C42) | FC = -2.50 | q.value = 0.0169
133 CACNA1D CHDH | IG40_SR1 | (AR_KnockIn) | (C42) | FC = -2.50 | q.value = 0.0144
134 SPON2 AC092535.4 | IG21_SR3 | (AR_KnockIn) | (C42) | FC = 2.44 | q.value = 0.0314
135 CACNA1D CHDH | IG40_SR2 | (AR_KnockIn) | (C42) | FC = -2.34 | q.value = 0.0282
136 SNORD64 SNORD116 | IG60_SR19 | (AR_KnockIn) | (C42) | FC = 2.33 | q.value = 0.00647
137 ZNRF1 LDHD | IG46_SR1 | (AR_KnockIn) | (C42) | FC = -2.31 | q.value = 0.0089
138 C6orf153 AL136304.10 | IG39_SR1 | (AR_KnockIn) | (C42) | FC = -2.31 | q.value = 0.00274
139 LPP TPRG1 | IG47_SR2 | (AR_KnockIn) | (C42) | FC = 2.29 | q.value = 0.000321
140 AC114940.2 EFNA5 | IG42_SR16 | (AR_KnockIn) | (C42) | FC = 2.27 | q.value = 1.93e-11
141 MRTO4 AKR7L | IG20_SR1 | (AR_KnockIn) | (C42) | FC = -2.22 | q.value = 0.0185
142 SNORA76 TEX2 | IG15_SR1 | (AR_KnockIn) | (C42) | FC = -2.14 | q.value = 0.00564
143 CBLN2 NETO1 | IG40_SR6 | (AR_KnockIn) | (C42) | FC = 2.13 | q.value = 0.000183
144 DYNLL2 OR4D1 | IG38_SR1 | (AR_KnockIn) | (C42) | FC = -2.12 | q.value = 0.00107
145 DYNLL2 OR4D1 | IG38_SR3 | (AR_KnockIn) | (C42) | FC = -2.11 | q.value = 0.00189
146 LPP TPRG1 | IG47_SR3 | (AR_KnockIn) | (C42) | FC = 2.07 | q.value = 0.00122
147 MRTO4 AKR7L | IG20_SR2 | (AR_KnockIn) | (C42) | FC = -2.03 | q.value = 0.0314