Distributions and lists of all significant differential expression values of the type: SilentIntergenicRegion for comparisons: AR_KnockIn_vs_C42 (p-value < 0.05 after multiple testing correction and Fold-Change > 1.5)
Distribution of log2 differential expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion
Distribution of all differential expression values that meet the p-value and fold-change cutoff for the feature type: SilentIntergenicRegion. The total number of significant DE features, as well as the max and min log2 DE observed are noted in the legend. *If you can not see the figure below, click here
Scatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion
Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntergenicRegion. Features that are differentially expressed (meet the p-value and fold-change cutoff) are indicated in magenta. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.
SmoothScatter plot of log2 expression values for comparison: AR_KnockIn_vs_C42 and data type: SilentIntergenicRegion
Correlation between expression values for all features that are expressed above background in one or both libraries for the feature type: SilentIntergenicRegion. A linear model is fit to the data and the correlation by Spearman method is reported. A loess model is also fit to illustrate the trend of the data.
Significant differentially expressed SilentIntergenicRegion features
The following table provides a ranked list of all significant differentially expressed SilentIntergenicRegion features. Each column corresponds to a pair-wise comparison of two libraries. Each table cell contains the Gene Name (which links to the ALEXA-Seq gene record), the Feature Name, the name of each library being compared (which links to the feature's coordinates in the UCSC Genome Browser and displays expression data), the fold-change (FC) of the differential expression event, and the multiple testing corrected p-value for the feature. A bold row indicates that the feature is not currently supported by EST or mRNA sequence alignments. For exon junction features the number of exons skipped by the junction is indicated as 'Sn' where n is the number of exons skipped (e.g. S0 means no exons skipped, S1 means one exon skipped, etc.).
RANK | AR_KnockIn_vs_C42 (Gene | Feature | Links | Values) |
1 | AL078639.5 CDR1 | IG27_SR6 | (AR_KnockIn) | (C42) | FC = -45.98 | q.value = 1.06e-17 |
2 | CDR1 hsa-mir-320d-2 | IG28_SR1 | (AR_KnockIn) | (C42) | FC = -45.76 | q.value = 2.58e-21 |
3 | AL078639.5 CDR1 | IG27_SR5 | (AR_KnockIn) | (C42) | FC = -44.68 | q.value = 4.29e-22 |
4 | RP1-177G6.2 AL078639.5 | IG26_SR11 | (AR_KnockIn) | (C42) | FC = -24.29 | q.value = 6.91e-10 |
5 | RP1-177G6.2 AL078639.5 | IG26_SR10 | (AR_KnockIn) | (C42) | FC = -20.37 | q.value = 1.42e-07 |
6 | DSC3 DSC2 | IG45_SR3 | (AR_KnockIn) | (C42) | FC = 20.29 | q.value = 3.1e-11 |
7 | AC063977.6 ETFB | IG33_SR3 | (AR_KnockIn) | (C42) | FC = -18.43 | q.value = 1.27e-13 |
8 | KIAA1257 CCDC48 | IG49_SR3 | (AR_KnockIn) | (C42) | FC = -17.19 | q.value = 2.24e-16 |
9 | DPP4 GCG | IG39_SR1 | (AR_KnockIn) | (C42) | FC = -16.66 | q.value = 2.02e-06 |
10 | AL078639.5 CDR1 | IG27_SR2 | (AR_KnockIn) | (C42) | FC = -16.43 | q.value = 5.52e-05 |
11 | AC140134.2 AC146944.1 | IG23_SR31 | (AR_KnockIn) | (C42) | FC = 16.32 | q.value = 0.000432 |
12 | DPP4 GCG | IG39_SR2 | (AR_KnockIn) | (C42) | FC = -14.73 | q.value = 2.6e-05 |
13 | DSC3 DSC2 | IG45_SR2 | (AR_KnockIn) | (C42) | FC = 14.60 | q.value = 2.47e-05 |
14 | DSC3 DSC2 | IG45_SR4 | (AR_KnockIn) | (C42) | FC = 14.21 | q.value = 7.65e-10 |
15 | DCN BTG1 | IG42_SR6 | (AR_KnockIn) | (C42) | FC = 13.65 | q.value = 3.3e-11 |
16 | AL078639.5 CDR1 | IG27_SR1 | (AR_KnockIn) | (C42) | FC = -12.49 | q.value = 0.000278 |
17 | Y_RNA TMEM132C | IG41_SR30 | (AR_KnockIn) | (C42) | FC = -12.16 | q.value = 0.0015 |
18 | CWC22 UBE2E3 | IG5_SR9 | (AR_KnockIn) | (C42) | FC = 11.79 | q.value = 9.25e-06 |
19 | AL078639.5 CDR1 | IG27_SR4 | (AR_KnockIn) | (C42) | FC = -11.44 | q.value = 0.000278 |
20 | CDR1 hsa-mir-320d-2 | IG28_SR2 | (AR_KnockIn) | (C42) | FC = -11.32 | q.value = 0.0015 |
21 | AL078639.5 CDR1 | IG27_SR3 | (AR_KnockIn) | (C42) | FC = -11.12 | q.value = 0.0032 |
22 | hsa-mir-216b CCDC85A | IG48_SR13 | (AR_KnockIn) | (C42) | FC = -10.65 | q.value = 0.000645 |
23 | Y_RNA TMEM132C | IG41_SR29 | (AR_KnockIn) | (C42) | FC = -10.13 | q.value = 0.00688 |
24 | AC023943.6 API5 | IG17_SR8 | (AR_KnockIn) | (C42) | FC = 9.89 | q.value = 0.021 |
25 | SLC4A10 DPP4 | IG38_SR5 | (AR_KnockIn) | (C42) | FC = -9.21 | q.value = 0.00688 |
26 | AC069218.13 NAALADL2 | IG39_SR32 | (AR_KnockIn) | (C42) | FC = 9.11 | q.value = 0.00258 |
27 | SNORA25 U6 | IG11_SR11 | (AR_KnockIn) | (C42) | FC = -9.10 | q.value = 0.0154 |
28 | AGRP FAM65A | IG47_SR4 | (AR_KnockIn) | (C42) | FC = 8.68 | q.value = 0.0324 |
29 | CWC22 UBE2E3 | IG5_SR13 | (AR_KnockIn) | (C42) | FC = 8.62 | q.value = 0.000114 |
30 | SNORA25 U6 | IG11_SR9 | (AR_KnockIn) | (C42) | FC = -8.60 | q.value = 0.00688 |
31 | AC069218.13 NAALADL2 | IG39_SR31 | (AR_KnockIn) | (C42) | FC = 8.56 | q.value = 2.82e-05 |
32 | AC069218.13 NAALADL2 | IG39_SR30 | (AR_KnockIn) | (C42) | FC = 8.36 | q.value = 0.00258 |
33 | CWC22 UBE2E3 | IG5_SR8 | (AR_KnockIn) | (C42) | FC = 8.24 | q.value = 0.0154 |
34 | KLHL1 U6 | IG22_SR8 | (AR_KnockIn) | (C42) | FC = 8.08 | q.value = 0.0324 |
35 | hsa-mir-216b CCDC85A | IG48_SR15 | (AR_KnockIn) | (C42) | FC = -7.72 | q.value = 1.01e-05 |
36 | CWC22 UBE2E3 | IG5_SR12 | (AR_KnockIn) | (C42) | FC = 7.70 | q.value = 0.00166 |
37 | AC069218.13 NAALADL2 | IG39_SR28 | (AR_KnockIn) | (C42) | FC = 7.68 | q.value = 0.0135 |
38 | hsa-mir-216b CCDC85A | IG48_SR12 | (AR_KnockIn) | (C42) | FC = -7.64 | q.value = 3.94e-05 |
39 | AC069218.13 NAALADL2 | IG39_SR29 | (AR_KnockIn) | (C42) | FC = 7.58 | q.value = 0.0161 |
40 | SNORA25 U6 | IG11_SR10 | (AR_KnockIn) | (C42) | FC = -7.53 | q.value = 0.0315 |
41 | GPRIN3 SNCA | IG22_SR15 | (AR_KnockIn) | (C42) | FC = 7.31 | q.value = 0.0154 |
42 | GPRIN3 SNCA | IG22_SR12 | (AR_KnockIn) | (C42) | FC = 7.22 | q.value = 4.32e-06 |
43 | CWC22 UBE2E3 | IG5_SR14 | (AR_KnockIn) | (C42) | FC = 6.97 | q.value = 0.000168 |
44 | BHLHA15 AC091654.4 | IG32_SR2 | (AR_KnockIn) | (C42) | FC = -6.51 | q.value = 1.26e-36 |
45 | BHLHA15 AC091654.4 | IG32_SR1 | (AR_KnockIn) | (C42) | FC = -6.44 | q.value = 1.71e-29 |
46 | hsa-mir-216b CCDC85A | IG48_SR14 | (AR_KnockIn) | (C42) | FC = -6.37 | q.value = 2.84e-05 |
47 | AL356957.27 AL356957.27 | IG34_SR2 | (AR_KnockIn) | (C42) | FC = 6.36 | q.value = 0.00375 |
48 | MAGEA10 GABRA3 | IG46_SR2 | (AR_KnockIn) | (C42) | FC = -6.23 | q.value = 0.00352 |
49 | SNORA42 TTC6 | IG49_SR3 | (AR_KnockIn) | (C42) | FC = 6.04 | q.value = 5.11e-05 |
50 | C15orf32 FAM174B | IG47_SR7 | (AR_KnockIn) | (C42) | FC = -5.95 | q.value = 0.00163 |
51 | GPRIN3 SNCA | IG22_SR14 | (AR_KnockIn) | (C42) | FC = 5.93 | q.value = 0.0232 |
52 | CYorf15A CYorf15B | IG24_SR1 | (AR_KnockIn) | (C42) | FC = 5.88 | q.value = 1.82e-06 |
53 | PACSIN1 SPDEF | IG19_SR1 | (AR_KnockIn) | (C42) | FC = -5.72 | q.value = 0.0314 |
54 | GPC6 DCT | IG26_SR1 | (AR_KnockIn) | (C42) | FC = -5.68 | q.value = 0.0455 |
55 | GATA2 C3orf27 | IG42_SR2 | (AR_KnockIn) | (C42) | FC = -5.62 | q.value = 2.12e-12 |
56 | C15orf32 FAM174B | IG47_SR8 | (AR_KnockIn) | (C42) | FC = -5.51 | q.value = 0.0155 |
57 | AC069218.13 NAALADL2 | IG39_SR26 | (AR_KnockIn) | (C42) | FC = 5.50 | q.value = 0.0433 |
58 | TUSC1 AL356791.9 | IG24_SR1 | (AR_KnockIn) | (C42) | FC = -5.48 | q.value = 0.0314 |
59 | RP11-666A1.4 NBPF15 | IG6_SR4 | (AR_KnockIn) | (C42) | FC = 5.48 | q.value = 0.0232 |
60 | hsa-mir-216b CCDC85A | IG48_SR16 | (AR_KnockIn) | (C42) | FC = -5.48 | q.value = 0.0089 |
61 | SLC35F5 | IG1_SR4 | (AR_KnockIn) | (C42) | FC = 5.46 | q.value = 0.0143 |
62 | C19orf50 UBA52 | IG19_SR2 | (AR_KnockIn) | (C42) | FC = -5.44 | q.value = 0.0263 |
63 | CWC22 UBE2E3 | IG5_SR15 | (AR_KnockIn) | (C42) | FC = 5.44 | q.value = 0.00493 |
64 | AL356957.27 AL356957.27 | IG34_SR6 | (AR_KnockIn) | (C42) | FC = 5.20 | q.value = 0.0346 |
65 | TRIM24 SVOPL | IG6_SR1 | (AR_KnockIn) | (C42) | FC = -5.07 | q.value = 0.0314 |
66 | CYorf15A CYorf15B | IG24_SR2 | (AR_KnockIn) | (C42) | FC = 4.95 | q.value = 0.00076 |
67 | RABL5 EMID2 | IG25_SR4 | (AR_KnockIn) | (C42) | FC = -4.86 | q.value = 0.00302 |
68 | PFN1 ENO3 | IG3_SR1 | (AR_KnockIn) | (C42) | FC = -4.84 | q.value = 0.0263 |
69 | PTPRE MKI67 | IG4_SR2 | (AR_KnockIn) | (C42) | FC = -4.79 | q.value = 0.0258 |
70 | FOXA1 SNORA42 | IG48_SR10 | (AR_KnockIn) | (C42) | FC = 4.68 | q.value = 0.0236 |
71 | SH2D1A ODZ1 | IG38_SR3 | (AR_KnockIn) | (C42) | FC = -4.65 | q.value = 3.73e-12 |
72 | AC012621.2 C16orf62 | IG48_SR1 | (AR_KnockIn) | (C42) | FC = -4.64 | q.value = 0.0433 |
73 | SNORA42 TTC6 | IG49_SR6 | (AR_KnockIn) | (C42) | FC = 4.56 | q.value = 0.00843 |
74 | FOXA1 SNORA42 | IG48_SR16 | (AR_KnockIn) | (C42) | FC = 4.56 | q.value = 0.0433 |
75 | RPL14 ZNF619 | IG30_SR2 | (AR_KnockIn) | (C42) | FC = 4.53 | q.value = 0.000168 |
76 | DNAJC22 SPATS2 | IG43_SR1 | (AR_KnockIn) | (C42) | FC = -4.53 | q.value = 2.34e-09 |
77 | MFSD3 RECQL4 | IG24_SR1 | (AR_KnockIn) | (C42) | FC = -4.49 | q.value = 0.0455 |
78 | PNPLA2 EFCAB4A | IG36_SR3 | (AR_KnockIn) | (C42) | FC = -4.48 | q.value = 0.0267 |
79 | SNORA42 TTC6 | IG49_SR2 | (AR_KnockIn) | (C42) | FC = 4.47 | q.value = 0.00263 |
80 | RBP5 CLSTN3 | IG48_SR2 | (AR_KnockIn) | (C42) | FC = -4.47 | q.value = 0.00868 |
81 | AC011499.5 DUS3L | IG16_SR1 | (AR_KnockIn) | (C42) | FC = -4.42 | q.value = 0.0433 |
82 | NVL AC092809.2 | IG4_SR1 | (AR_KnockIn) | (C42) | FC = -4.33 | q.value = 0.00564 |
83 | ZNF14 ZNF506 | IG3_SR19 | (AR_KnockIn) | (C42) | FC = 4.27 | q.value = 0.000168 |
84 | BANK1 SLC39A8 | IG20_SR3 | (AR_KnockIn) | (C42) | FC = -4.21 | q.value = 0.00507 |
85 | TMEM78 AL162595.17 | IG48_SR2 | (AR_KnockIn) | (C42) | FC = -4.18 | q.value = 5.24e-05 |
86 | MRPL12 SLC25A10 | IG36_SR1 | (AR_KnockIn) | (C42) | FC = -4.11 | q.value = 0.00275 |
87 | POTEB AC126335.16 | IG31_SR3 | (AR_KnockIn) | (C42) | FC = 4.05 | q.value = 1.05e-05 |
88 | LUC7L2 KLRG2 | IG16_SR5 | (AR_KnockIn) | (C42) | FC = -3.97 | q.value = 0.00237 |
89 | SNRPN SNORD64 | IG59_SR3 | (AR_KnockIn) | (C42) | FC = 3.97 | q.value = 0.0135 |
90 | AL022316.2 | IG1_SR3 | (AR_KnockIn) | (C42) | FC = -3.94 | q.value = 0.000432 |
91 | C9orf86 PHPT1 | IG48_SR4 | (AR_KnockIn) | (C42) | FC = -3.80 | q.value = 0.0407 |
92 | AC099552.4 INSIG1 | IG33_SR8 | (AR_KnockIn) | (C42) | FC = -3.80 | q.value = 7.11e-05 |
93 | SLC4A2 FASTK | IG41_SR1 | (AR_KnockIn) | (C42) | FC = -3.73 | q.value = 0.0371 |
94 | TXN2 FOXRED2 | IG14_SR3 | (AR_KnockIn) | (C42) | FC = -3.73 | q.value = 1.24e-50 |
95 | MAGEA5 MAGEA10 | IG45_SR3 | (AR_KnockIn) | (C42) | FC = 3.70 | q.value = 6.47e-05 |
96 | U6 AC093392.4 | IG12_SR2 | (AR_KnockIn) | (C42) | FC = 3.63 | q.value = 0.0135 |
97 | SNRPN SNORD64 | IG59_SR4 | (AR_KnockIn) | (C42) | FC = 3.56 | q.value = 0.00688 |
98 | FAM83F TNRC6B | IG2_SR4 | (AR_KnockIn) | (C42) | FC = -3.55 | q.value = 0.0217 |
99 | GATA2 C3orf27 | IG42_SR3 | (AR_KnockIn) | (C42) | FC = -3.54 | q.value = 0.000242 |
100 | AC037450.6 MMP16 | IG18_SR1 | (AR_KnockIn) | (C42) | FC = 3.51 | q.value = 7.67e-09 |
101 | RP11-233E12.2 PRMT6 | IG32_SR9 | (AR_KnockIn) | (C42) | FC = -3.50 | q.value = 0.00356 |
102 | AC037450.6 MMP16 | IG18_SR2 | (AR_KnockIn) | (C42) | FC = 3.35 | q.value = 2.5e-07 |
103 | MAP7 MAP3K5 | IG5_SR1 | (AR_KnockIn) | (C42) | FC = -3.26 | q.value = 0.000278 |
104 | IL17RA CECR6 | IG63_SR3 | (AR_KnockIn) | (C42) | FC = -3.24 | q.value = 0.0217 |
105 | SNORD64 SNORD116 | IG60_SR1 | (AR_KnockIn) | (C42) | FC = 3.23 | q.value = 0.00333 |
106 | U6 AC068446.22 | IG29_SR4 | (AR_KnockIn) | (C42) | FC = 3.20 | q.value = 0.037 |
107 | KIAA1370 ONECUT1 | IG12_SR15 | (AR_KnockIn) | (C42) | FC = 3.11 | q.value = 0.0363 |
108 | MOSC1 U6atac | IG17_SR5 | (AR_KnockIn) | (C42) | FC = -3.10 | q.value = 0.0444 |
109 | SNORD116 SNORD115 | IG13_SR8 | (AR_KnockIn) | (C42) | FC = 3.05 | q.value = 0.0499 |
110 | U6 AC068446.22 | IG29_SR3 | (AR_KnockIn) | (C42) | FC = 3.02 | q.value = 0.0473 |
111 | SNORD64 SNORD116 | IG60_SR5 | (AR_KnockIn) | (C42) | FC = 3.01 | q.value = 0.00211 |
112 | AC114940.2 EFNA5 | IG42_SR17 | (AR_KnockIn) | (C42) | FC = 2.95 | q.value = 2.4e-15 |
113 | SNORD64 SNORD116 | IG60_SR2 | (AR_KnockIn) | (C42) | FC = 2.95 | q.value = 0.000317 |
114 | SNORD64 SNORD116 | IG60_SR18 | (AR_KnockIn) | (C42) | FC = 2.93 | q.value = 0.00385 |
115 | NAALADL2 AC092920.7 | IG40_SR1 | (AR_KnockIn) | (C42) | FC = 2.92 | q.value = 0.0185 |
116 | AC084851.2 FOLH1 | IG44_SR3 | (AR_KnockIn) | (C42) | FC = 2.89 | q.value = 3.46e-05 |
117 | RP11-402G3.4 TNFSF15 | IG24_SR4 | (AR_KnockIn) | (C42) | FC = 2.88 | q.value = 0.0449 |
118 | TXN2 FOXRED2 | IG14_SR4 | (AR_KnockIn) | (C42) | FC = -2.84 | q.value = 1.71e-29 |
119 | U6 AC068446.22 | IG29_SR5 | (AR_KnockIn) | (C42) | FC = 2.84 | q.value = 0.0433 |
120 | ZNF426 ZNF121 | IG9_SR4 | (AR_KnockIn) | (C42) | FC = 2.80 | q.value = 0.00189 |
121 | SNORA42 TTC6 | IG49_SR9 | (AR_KnockIn) | (C42) | FC = 2.79 | q.value = 9.54e-08 |
122 | HIST1H2BI HIST1H4H | IG4_SR3 | (AR_KnockIn) | (C42) | FC = 2.79 | q.value = 0.00842 |
123 | RP11-402G3.4 TNFSF15 | IG24_SR3 | (AR_KnockIn) | (C42) | FC = 2.74 | q.value = 0.028 |
124 | SNORA42 TTC6 | IG49_SR10 | (AR_KnockIn) | (C42) | FC = 2.68 | q.value = 3.22e-07 |
125 | GNA11 GNA15 | IG9_SR1 | (AR_KnockIn) | (C42) | FC = -2.64 | q.value = 1.65e-05 |
126 | SNORD64 SNORD116 | IG60_SR17 | (AR_KnockIn) | (C42) | FC = 2.62 | q.value = 0.0403 |
127 | SNORD64 SNORD116 | IG60_SR4 | (AR_KnockIn) | (C42) | FC = 2.62 | q.value = 0.000213 |
128 | SNORD64 SNORD116 | IG60_SR3 | (AR_KnockIn) | (C42) | FC = 2.61 | q.value = 0.000741 |
129 | RPL14 ZNF619 | IG30_SR1 | (AR_KnockIn) | (C42) | FC = 2.61 | q.value = 0.021 |
130 | XPNPEP3 RBX1 | IG10_SR1 | (AR_KnockIn) | (C42) | FC = 2.59 | q.value = 0.0135 |
131 | ALOX15B ALOX12B | IG43_SR2 | (AR_KnockIn) | (C42) | FC = -2.55 | q.value = 0.00842 |
132 | SLC6A11 SLC6A1 | IG12_SR1 | (AR_KnockIn) | (C42) | FC = -2.50 | q.value = 0.0169 |
133 | CACNA1D CHDH | IG40_SR1 | (AR_KnockIn) | (C42) | FC = -2.50 | q.value = 0.0144 |
134 | SPON2 AC092535.4 | IG21_SR3 | (AR_KnockIn) | (C42) | FC = 2.44 | q.value = 0.0314 |
135 | CACNA1D CHDH | IG40_SR2 | (AR_KnockIn) | (C42) | FC = -2.34 | q.value = 0.0282 |
136 | SNORD64 SNORD116 | IG60_SR19 | (AR_KnockIn) | (C42) | FC = 2.33 | q.value = 0.00647 |
137 | ZNRF1 LDHD | IG46_SR1 | (AR_KnockIn) | (C42) | FC = -2.31 | q.value = 0.0089 |
138 | C6orf153 AL136304.10 | IG39_SR1 | (AR_KnockIn) | (C42) | FC = -2.31 | q.value = 0.00274 |
139 | LPP TPRG1 | IG47_SR2 | (AR_KnockIn) | (C42) | FC = 2.29 | q.value = 0.000321 |
140 | AC114940.2 EFNA5 | IG42_SR16 | (AR_KnockIn) | (C42) | FC = 2.27 | q.value = 1.93e-11 |
141 | MRTO4 AKR7L | IG20_SR1 | (AR_KnockIn) | (C42) | FC = -2.22 | q.value = 0.0185 |
142 | SNORA76 TEX2 | IG15_SR1 | (AR_KnockIn) | (C42) | FC = -2.14 | q.value = 0.00564 |
143 | CBLN2 NETO1 | IG40_SR6 | (AR_KnockIn) | (C42) | FC = 2.13 | q.value = 0.000183 |
144 | DYNLL2 OR4D1 | IG38_SR1 | (AR_KnockIn) | (C42) | FC = -2.12 | q.value = 0.00107 |
145 | DYNLL2 OR4D1 | IG38_SR3 | (AR_KnockIn) | (C42) | FC = -2.11 | q.value = 0.00189 |
146 | LPP TPRG1 | IG47_SR3 | (AR_KnockIn) | (C42) | FC = 2.07 | q.value = 0.00122 |
147 | MRTO4 AKR7L | IG20_SR2 | (AR_KnockIn) | (C42) | FC = -2.03 | q.value = 0.0314 |