Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PHF8	Gene	0	78.42	70.55	87.20	102.84	80.16	62.80	46.22
2	357988	Transcript	0	0.55	0.32	1.54	0.31	1.93	0.31	0.09
3	375193	Transcript	0	0	0	0	0	0	0	0
4	396282	Transcript	0	24.49	13.95	28.02	9.63	0.81	14.07	8.08
5	375189	Transcript	0	0	0	0	0	0	0	0
6	338946	Transcript	1	16.52	30.16	36.96	21.59	56.34	25.33	29.85
7	338154	Transcript	0	0	0	0	0	0	0	0
8	354751	Transcript	0	21.48	31.81	36.77	66.08	51.55	37.22	17.48
9	322659	Transcript	0	0.77	0.00	0.29	0.66	0.00	0.00	0.34
10	396277	Transcript	0	0	0	0	0	0	0	0
11	ER1a	ExonRegion	0	0.20	0.64	0.82	0.00	0.62	0.00	0.18
12	E1_Ab	KnownBoundary	0	0.00	0.00	1.44	0.00	1.08	0.00	0.00
13	ER1b	ExonRegion	0	0.79	0.00	1.15	0.00	0.31	0.00	0.14
14	E1a_E4a	KnownJunction	0	1.80	0.00	1.48	0.00	0.00	0.00	0.70
15	I1_AR1	ActiveIntronRegion	0	5.68	5.98	6.43	6.12	3.10	14.69	4.29
16	ER2a	ExonRegion	0	14.28	18.69	20.11	26.86	11.56	28.72	11.52
17	E2a_E4a	KnownJunction	1	20.60	20.94	27.65	40.88	23.01	42.18	16.68
18	ER3a	ExonRegion	0	0.00	0.00	0.58	0.07	0.00	0.00	0.00
19	E3_Ab	KnownBoundary	0	0.88	1.21	3.25	1.41	1.04	0.00	0.00
20	ER3b	ExonRegion	0	0.02	0.00	0.64	1.25	0.66	0.00	0.11
21	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	1.41	0.95	0.00	0.00
22	ER4a	ExonRegion	0	27.15	49.44	41.54	77.32	36.11	39.15	25.12
23	E4a_E5a	KnownJunction	0	36.43	67.15	53.07	75.72	24.55	41.22	28.92
24	ER5a	ExonRegion	0	44.35	82.48	68.99	93.42	38.74	54.07	38.82
25	E5a_E6a	KnownJunction	0	49.60	78.55	70.99	101.00	40.90	52.82	41.25
26	ER6a	ExonRegion	0	48.36	80.09	89.35	91.63	58.70	50.20	38.99
27	E6a_E7a	KnownJunction	0	64.24	69.04	110.13	84.25	80.39	57.35	42.69
28	E7_Aa	NovelBoundary	1	35.83	1.55	54.52	3.33	2.05	4.56	0.89
29	ER7a	ExonRegion	0	81.05	79.45	98.36	101.01	76.42	52.98	45.52
30	E7a_E8a	KnownJunction	0	63.14	94.16	89.99	93.46	86.10	45.51	38.39
31	ER8a	ExonRegion	0	81.78	80.96	103.12	96.49	86.41	42.58	51.78
32	E8a_E9a	KnownJunction	0	76.16	91.50	122.55	120.01	81.47	50.12	52.27
33	ER9a	ExonRegion	0	64.42	98.27	118.92	127.02	86.46	48.54	48.14
34	E9a_E10a	KnownJunction	1	72.75	91.87	130.09	159.35	120.45	42.64	53.38
35	ER10a	ExonRegion	0	67.69	91.62	113.80	126.20	109.87	56.53	57.80
36	E10a_E11a	KnownJunction	0	75.32	90.22	116.80	134.53	123.79	63.17	62.93
37	ER11a	ExonRegion	0	63.94	94.22	99.08	121.59	97.95	66.08	58.77
38	E11a_E12a	KnownJunction	0	62.17	89.11	90.59	99.45	107.66	84.07	58.86
39	ER12a	ExonRegion	0	74.44	94.90	104.92	129.00	115.20	70.55	59.74
40	E12a_E13a	KnownJunction	0	76.79	118.41	87.87	150.14	141.73	71.61	55.10
41	ER13a	ExonRegion	0	61.18	99.41	91.07	137.18	101.88	74.12	55.54
42	E13a_E14a	KnownJunction	0	65.37	99.33	96.24	135.54	89.21	71.37	58.29
43	ER14a	ExonRegion	0	58.66	99.39	85.62	123.02	95.90	60.37	53.66
44	E14a_E15a	KnownJunction	1	37.72	64.89	39.26	54.45	41.70	25.73	29.06
45	E14a_E16a	KnownJunction	0	21.48	31.81	36.77	66.08	51.55	37.22	17.48
46	ER15a	ExonRegion	0	42.69	67.45	53.05	56.73	57.16	33.87	42.80
47	E15a_E16a	KnownJunction	1	67.23	82.94	47.38	43.64	85.32	20.61	53.17
48	ER16a	ExonRegion	0	150.50	108.73	153.36	146.24	163.48	75.43	88.51
49	E16a_E17a	KnownJunction	0	216.65	110.94	193.88	170.16	151.39	91.28	87.61
50	ER17a	ExonRegion	0	220.92	119.80	206.93	168.70	157.45	99.79	83.67
51	E17a_E18a	KnownJunction	1	248.06	96.10	205.83	144.23	195.58	77.59	61.61
52	E18a_E18b	KnownJunction	0	72.63	39.67	82.92	27.01	0.00	39.74	23.98
53	E18_Ab	NovelBoundary	0	196.51	111.78	195.19	104.33	143.48	76.03	61.11
54	ER18a	ExonRegion	1	246.85	113.64	219.99	135.15	166.46	90.11	67.51
55	ER18b	ExonRegion	1	202.87	119.54	196.98	116.72	146.91	75.28	61.79
56	ER18c	ExonRegion	0	131.23	104.23	161.78	112.54	122.30	71.53	58.75
57	E18b_E19a	KnownJunction	0	81.15	92.53	115.62	119.99	125.36	50.81	52.42
58	ER19a	ExonRegion	0	80.76	91.85	108.44	110.81	111.80	40.66	48.43
59	E19_Da	KnownBoundary	1	86.07	88.53	96.45	88.21	100.23	35.94	48.58
60	E19a_E20a	KnownJunction	0	1.03	0.00	0.72	0.00	3.07	0.00	0.00
61	ER19b	ExonRegion	0	80.27	77.91	73.64	71.62	78.58	40.86	39.04
62	E19b_E21a	KnownJunction	0	49.80	55.30	54.10	73.99	63.97	41.33	32.88
63	ER20a	ExonRegion	0	0.77	0.64	1.22	2.46	2.75	0.00	0.00
64	E20a_E21a	KnownJunction	0	0.97	1.37	0.89	3.31	1.96	0.00	0.00
65	I20	Intron	0	20.99	5.69	20.53	7.14	17.99	3.42	4.65
66	I20_AR1	ActiveIntronRegion	0	21.07	5.71	20.60	7.16	18.06	3.43	4.67
67	ER21a	ExonRegion	0	47.06	85.42	68.57	100.85	64.00	67.42	43.97
68	E21a_E24a	KnownJunction	0	64.51	63.45	96.57	130.99	76.21	87.13	55.53
69	ER22a	ExonRegion	0	0.85	2.19	1.15	1.87	2.43	2.45	0.27
70	ER23a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER24a	ExonRegion	0	68.69	69.06	121.12	124.38	92.42	77.34	55.00
72	E24a_E25a	KnownJunction	0	87.00	74.48	144.64	113.11	126.10	60.81	54.86
73	ER25a	ExonRegion	0	93.23	87.16	121.94	130.58	103.59	89.68	57.72
74	E25a_E26a	KnownJunction	0	5.67	6.73	4.48	12.49	1.06	1.61	2.95
75	E25a_E27a	KnownJunction	0	94.88	88.38	123.76	143.85	114.30	98.73	50.19
76	ER26a	ExonRegion	0	7.72	9.38	6.51	7.42	2.22	1.29	2.63
77	E26_Da	KnownBoundary	0	10.58	9.96	11.17	2.87	3.27	3.22	1.56
78	ER26b	ExonRegion	0	6.58	5.30	4.34	4.00	1.51	3.80	1.99
79	ER26c	ExonRegion	0	1.54	0.00	0.00	1.25	0.00	0.00	0.67
80	ER27a	ExonRegion	0	92.81	86.19	108.55	132.12	103.91	79.30	69.31
81	E27a_E28a	KnownJunction	0	65.84	80.60	77.17	105.76	110.93	67.03	65.57
82	ER28a	ExonRegion	0	101.80	87.53	114.65	128.69	119.11	81.91	81.78
83	E28_Da	KnownBoundary	0	94.33	87.38	106.20	132.67	131.15	95.27	76.00
84	E28a_E28b	KnownJunction	0	16.52	30.16	36.96	21.59	56.34	25.33	29.85
85	ER28b	ExonRegion	0	76.96	74.05	81.93	134.69	79.66	73.90	44.52
86	E28_Ab	KnownBoundary	0	68.01	130.12	73.37	187.66	137.93	96.64	73.32
87	ER28c	ExonRegion	0	109.74	155.61	151.34	206.10	191.52	156.63	138.28
88	E28_Db	KnownBoundary	0	117.05	137.87	155.26	208.93	170.91	175.30	140.79
89	ER28d	ExonRegion	0	95.92	118.94	122.68	202.17	144.74	116.68	100.73
90	E28_Dc	KnownBoundary	0	126.13	67.83	154.54	142.85	89.47	88.81	71.28
91	ER28e	ExonRegion	0	136.22	59.00	109.65	95.39	93.97	82.15	42.31
92	ER28f	ExonRegion	0	0.90	0.00	2.26	0.62	3.24	0.61	0.00
93	IG4_AR5	ActiveIntergenicRegion	0	7.23	4.80	7.19	9.22	7.63	4.82	4.71
94	IG4_SR4	SilentIntergenicRegion	0	4.74	7.29	7.34	9.56	5.67	3.06	6.75
95	IG4_AR4	ActiveIntergenicRegion	0	4.95	7.02	5.57	8.31	6.30	3.68	7.20
96	IG4_SR3	SilentIntergenicRegion	0	6.66	8.73	6.24	7.15	7.07	6.91	5.01
97	IG4_AR3	ActiveIntergenicRegion	0	5.05	7.99	4.72	10.56	5.33	6.22	5.83
98	IG4_AR2	ActiveIntergenicRegion	0	1.49	7.90	3.94	11.07	5.01	3.68	4.13