Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HDAC8	Gene	0	27.16	9.68	20.99	9.71	33.86	11.17	20.41
2	373568	Transcript	0	6.02	4.69	5.22	2.97	7.04	5.54	5.70
3	373554	Transcript	0	7.06	3.90	1.89	1.12	6.78	0.80	6.34
4	373571	Transcript	0	2.18	0.25	1.24	0.18	1.19	0.14	2.10
5	373583	Transcript	0	5.00	0.00	3.20	0.00	2.47	0.00	0.00
6	373560	Transcript	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
7	373556	Transcript	0	1.31	1.50	1.46	0.56	2.43	0.00	2.31
8	373559	Transcript	0	3.70	3.68	3.66	3.68	2.04	1.02	0.39
9	340176	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	373561	Transcript	0	0.00	0.00	0.00	0.00	0.16	0.00	0.00
11	373589	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	373573	Transcript	1	58.84	8.04	39.67	13.95	63.49	22.94	32.96
13	ER1a	ExonRegion	0	0.15	1.41	1.62	0.43	0.71	5.20	0.29
14	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	1.25	0.92	4.66	0.00
15	E1_Ac	KnownBoundary	0	0.00	1.63	0.00	0.00	0.00	1.66	0.00
16	E1_Ad	KnownBoundary	0	0.00	0.00	3.25	0.00	1.18	3.32	0.00
17	E1_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	3.53	1.66	1.73
18	ER1b	ExonRegion	1	2.23	0.00	2.24	2.49	7.61	11.03	2.23
19	E1_Af	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E1_Ag	KnownBoundary	0	0.98	0.00	0.00	0.00	0.00	0.00	0.00
21	ER1c	ExonRegion	1	4.10	0.00	4.74	2.08	8.10	11.03	3.37
22	ER1d	ExonRegion	1	15.37	2.24	9.74	2.88	30.03	12.92	13.60
23	E1_Ah	KnownBoundary	0	44.73	5.78	24.96	5.39	31.74	8.33	30.77
24	ER1e	ExonRegion	1	21.94	4.20	14.10	3.74	41.08	13.26	20.91
25	ER1f	ExonRegion	1	25.36	4.86	20.32	6.23	47.78	14.71	23.61
26	ER1g	ExonRegion	1	44.57	6.88	29.28	9.70	82.42	19.21	38.00
27	ER1h	ExonRegion	0	46.08	22.42	32.19	20.11	68.19	24.12	41.93
28	E1a_E2a	KnownJunction	0	34.97	27.98	33.66	18.53	28.98	24.79	51.02
29	ER2a	ExonRegion	0	81.74	36.58	63.35	34.96	51.16	22.39	74.09
30	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E2a_E5a	KnownJunction	0	7.39	7.36	7.33	7.37	4.08	2.04	0.79
32	E2a_E16b	KnownJunction	0	8.46	0.00	5.04	0.00	0.90	0.00	0.00
33	ER3a	ExonRegion	0	50.18	38.63	42.21	33.18	114.96	29.29	58.49
34	E3a_E4a	KnownJunction	0	29.94	40.62	32.16	42.02	64.02	26.77	55.39
35	ER4a	ExonRegion	0	59.38	40.38	50.69	34.85	107.00	38.29	65.67
36	E4_Da	KnownBoundary	0	0.58	2.52	1.42	1.30	5.39	0.00	4.26
37	E4a_E4b	KnownJunction	0	2.62	2.99	2.92	1.11	4.06	0.00	4.39
38	E4a_E5a	KnownJunction	0	65.27	35.23	59.79	30.07	103.12	17.74	46.19
39	E4a_E10a	KnownJunction	0	0.00	1.63	0.00	0.00	0.00	0.00	0.00
40	E4_Db	KnownBoundary	0	2.87	1.42	0.57	0.00	3.07	1.29	0.76
41	E4b_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER4b	ExonRegion	0	4.61	4.86	2.03	2.49	8.10	2.45	6.07
43	ER4c	ExonRegion	0	7.06	3.90	1.89	1.12	6.78	0.80	6.34
44	E4_Ab	KnownBoundary	0	4.72	2.94	1.78	3.20	5.42	0.00	6.84
45	ER4d	ExonRegion	0	8.77	4.36	6.66	2.19	10.68	0.00	11.28
46	E4_Dc	KnownBoundary	0	8.83	2.71	8.42	0.00	7.47	0.00	8.47
47	ER4e	ExonRegion	0	6.75	1.95	4.10	1.16	9.76	0.00	5.23
48	ER4f	ExonRegion	0	0.00	0.00	0.00	0.00	0.81	0.00	0.22
49	ER5a	ExonRegion	0	85.21	37.78	72.06	29.83	131.06	38.22	59.97
50	E5a_E6a	KnownJunction	0	86.69	35.52	65.54	22.57	115.93	23.82	63.62
51	E5a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER6a	ExonRegion	0	82.96	27.40	59.77	28.50	131.55	20.10	59.28
53	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E6b_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER6b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E7a_E8b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	E8_Ab	NovelBoundary	0	37.94	9.14	27.45	18.99	37.18	8.28	17.33
59	ER8a	ExonRegion	0	87.27	23.43	65.71	39.55	108.98	22.77	46.84
60	ER8b	ExonRegion	0	91.03	30.60	74.55	34.89	130.84	26.97	53.06
61	E8a_E10a	KnownJunction	0	11.92	10.01	7.90	6.77	36.29	1.66	10.83
62	E8a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	E8a_E12a	KnownJunction	0	69.00	13.85	76.22	30.26	97.84	19.38	47.31
64	I8_SR1	SilentIntronRegion	0	1.37	0.00	0.00	0.00	7.65	0.00	0.00
65	I8_AR1	ActiveIntronRegion	0	1.54	0.00	0.00	0.00	8.50	0.00	0.00
66	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.81	0.00	0.00
67	E10_Aa	NovelBoundary	0	5.36	0.00	10.66	0.00	10.51	0.00	2.88
68	ER10a	ExonRegion	0	21.57	7.12	10.91	7.77	20.08	3.81	13.19
69	E10_Da	KnownBoundary	0	21.40	4.62	9.02	4.01	14.98	3.06	15.21
70	ER10b	ExonRegion	0	26.44	4.85	15.35	8.26	30.28	3.39	15.64
71	E10_Db	KnownBoundary	0	28.01	5.28	14.64	6.10	35.34	4.34	11.35
72	ER10c	ExonRegion	0	14.87	7.34	8.11	4.89	15.82	2.47	11.22
73	E10_Dc	KnownBoundary	0	15.76	9.41	8.09	4.50	12.15	1.37	10.68
74	ER10d	ExonRegion	0	11.89	7.96	8.82	5.52	13.37	5.87	11.11
75	ER11a	ExonRegion	0	4.35	0.49	2.48	0.36	2.38	0.28	4.20
76	ER12a	ExonRegion	0	80.83	18.69	70.79	28.08	106.14	25.63	50.59
77	E12a_E13a	KnownJunction	0	92.88	12.51	77.44	25.52	98.16	23.88	46.94
78	ER13a	ExonRegion	0	104.17	23.73	82.72	27.87	106.47	40.07	53.03
79	E13a_E14a	KnownJunction	1	133.89	19.41	102.68	32.62	114.66	40.74	51.99
80	ER14a	ExonRegion	0	121.27	19.47	79.27	30.15	98.23	39.31	56.43
81	E14a_E16a	KnownJunction	0	74.67	11.06	42.59	16.58	84.05	21.68	35.37
82	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
83	ER16a	ExonRegion	1	43.00	5.02	36.76	11.32	42.93	24.19	30.55
84	E16_Ab	KnownBoundary	0	15.17	4.54	14.66	9.67	4.15	11.95	9.80
85	ER16b	ExonRegion	0	6.47	2.11	7.39	1.90	5.23	8.65	5.87
86	ER16c	ExonRegion	0	1.54	0.00	1.35	0.00	4.05	0.00	0.00