Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KIAA0368	Gene	0	213.40	256.69	313.92	325.74	324.44	341.82	242.04
2	259335	Transcript	0	1.76	1.09	1.53	1.67	0.81	1.99	0.80
3	338205	Transcript	0	34.65	49.04	52.84	55.32	28.66	61.77	38.74
4	374378	Transcript	0	0	0	0	0	0	0	0
5	374383	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.49	0.00	0.00
7	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	0.28	1.10	0.72	1.09	0.68	1.54	0.11
9	E2a_E2c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER2b	ExonRegion	0	2.31	34.02	1.81	22.86	7.83	23.70	24.06
11	ER2c	ExonRegion	0	6.01	60.72	2.02	50.41	9.19	50.49	27.61
12	E2_Ac	KnownBoundary	0	3.25	41.64	1.91	35.33	5.51	49.26	8.03
13	ER2d	ExonRegion	0	12.94	75.40	24.70	72.80	36.82	78.21	25.46
14	E2_Db	KnownBoundary	0	0.00	3.18	0.52	2.41	0.00	1.15	0.54
15	E2b_E3a	KnownJunction	0	16.96	32.37	30.22	27.17	21.78	28.70	23.63
16	E2b_E4a	NovelJunction	1	193.94	167.93	218.82	211.61	48.90	206.17	99.65
17	ER2e	ExonRegion	0	1.95	1.71	1.49	3.75	1.49	3.55	0.75
18	E2c_E4a	KnownJunction	0	8.33	3.70	6.96	5.20	2.19	6.83	3.97
19	ER3a	ExonRegion	0	51.94	59.71	84.02	70.91	83.86	85.20	59.02
20	E3a_E4a	KnownJunction	0	95.27	89.95	145.92	125.59	19.55	140.81	80.73
21	ER4a	ExonRegion	0	252.04	363.92	327.39	475.75	134.52	532.78	176.12
22	E4_Da	NovelBoundary	1	147.79	6.80	179.36	0.00	2.03	6.19	9.42
23	E4a_E5a	KnownJunction	0	566.26	518.68	644.19	832.29	236.73	827.31	335.50
24	ER5a	ExonRegion	0	401.29	375.20	511.13	529.32	301.40	557.36	269.76
25	E5a_E6a	KnownJunction	1	353.49	323.51	442.91	353.13	247.61	404.97	203.12
26	ER6a	ExonRegion	0	354.49	364.31	432.43	392.94	326.38	435.32	258.69
27	E6a_E7a	KnownJunction	0	362.42	364.75	531.67	425.41	349.90	471.46	317.51
28	ER7a	ExonRegion	0	360.00	390.81	486.84	488.22	361.88	485.45	278.55
29	E7a_E8a	KnownJunction	0	282.19	336.67	413.29	461.42	338.92	437.88	293.67
30	ER8a	ExonRegion	0	229.69	330.12	370.49	402.49	275.50	369.94	280.34
31	E8a_E9a	KnownJunction	0	170.79	310.98	295.91	385.51	252.59	357.56	263.30
32	E9_Aa	NovelBoundary	1	66.86	4.31	123.08	7.37	0.00	0.00	3.07
33	ER9a	ExonRegion	0	217.33	360.57	338.77	426.77	311.39	363.03	330.67
34	E9a_E10a	KnownJunction	0	275.55	404.21	388.66	462.69	435.74	432.31	406.07
35	ER10a	ExonRegion	0	270.05	385.89	403.50	440.62	363.63	391.32	365.40
36	E10a_E11a	KnownJunction	0	275.73	370.85	407.15	449.14	297.38	384.52	346.82
37	ER11a	ExonRegion	0	281.21	360.24	403.25	432.25	388.84	380.23	340.61
38	E11a_E12a	KnownJunction	0	333.40	394.73	453.13	456.24	339.20	412.21	369.55
39	ER12a	ExonRegion	0	343.39	381.56	540.54	465.06	421.98	407.20	370.01
40	E12a_E13a	KnownJunction	0	328.04	353.19	495.93	454.43	373.76	380.32	285.30
41	ER13a	ExonRegion	0	295.45	357.46	456.32	430.25	346.63	359.06	306.53
42	E13a_E14a	KnownJunction	0	224.25	249.79	377.64	384.40	207.01	287.35	245.38
43	E13a_E15a	NovelJunction	0	22.55	29.19	8.46	25.74	0.97	26.10	3.32
44	ER14a	ExonRegion	0	257.27	263.67	445.50	382.44	300.97	341.42	285.00
45	E14a_E15a	KnownJunction	0	226.55	226.85	373.47	299.47	318.98	296.54	250.99
46	ER15a	ExonRegion	0	232.89	281.38	392.13	351.72	301.04	315.74	271.89
47	E15a_E16a	KnownJunction	0	198.03	262.19	346.48	343.05	295.15	311.90	239.39
48	ER16a	ExonRegion	0	174.64	290.70	313.35	319.81	283.10	297.30	251.37
49	E16a_E17a	KnownJunction	0	203.08	278.87	316.29	315.48	283.11	265.29	240.74
50	ER17a	ExonRegion	0	206.01	285.34	323.98	341.48	338.88	285.89	271.35
51	E17a_E18a	KnownJunction	0	279.47	334.28	382.85	398.94	293.60	311.20	262.26
52	ER18a	ExonRegion	0	364.09	396.61	475.73	495.51	418.96	410.29	340.14
53	E18a_E19a	KnownJunction	0	443.49	421.50	539.15	571.00	408.70	470.31	356.68
54	ER18b	ExonRegion	0	428.83	421.76	543.86	539.93	393.14	449.12	369.41
55	ER19a	ExonRegion	0	380.57	362.45	459.44	468.63	485.90	435.17	335.68
56	E19a_E20a	KnownJunction	0	295.41	283.47	319.12	387.27	390.91	262.53	267.88
57	ER20a	ExonRegion	0	216.92	278.27	306.27	366.24	299.30	312.55	275.44
58	E20a_E21a	KnownJunction	0	199.90	269.18	327.93	362.21	319.67	315.67	263.86
59	ER21a	ExonRegion	0	222.88	274.74	349.57	357.92	300.25	347.45	276.09
60	E21a_E22a	KnownJunction	0	232.47	291.72	365.51	412.30	347.27	418.42	273.39
61	ER22a	ExonRegion	0	346.13	370.58	522.69	461.96	478.44	485.40	375.29
62	E22a_E23a	KnownJunction	0	439.08	369.80	599.06	467.48	426.87	400.87	401.92
63	ER23a	ExonRegion	0	338.12	334.97	506.79	428.74	434.10	368.79	374.42
64	E23a_E24a	KnownJunction	0	369.98	313.31	540.81	457.51	459.51	373.80	446.07
65	ER24a	ExonRegion	0	289.62	305.46	469.17	368.89	465.64	330.13	336.04
66	E24a_E25a	KnownJunction	0	260.21	271.67	408.16	330.24	491.92	292.81	312.05
67	ER25a	ExonRegion	0	281.49	262.25	397.89	322.41	438.92	281.53	284.25
68	E25a_E26a	KnownJunction	0	194.74	244.38	311.07	329.59	350.38	321.49	244.14
69	ER26a	ExonRegion	0	200.99	277.21	328.16	361.36	337.00	304.94	280.28
70	E26a_E27a	KnownJunction	0	229.35	253.70	349.39	360.53	393.51	314.31	281.68
71	ER27a	ExonRegion	0	227.79	273.90	352.67	375.42	409.65	367.08	318.40
72	E27a_E28a	KnownJunction	0	170.44	223.18	286.79	353.92	353.98	307.82	241.13
73	ER28a	ExonRegion	0	238.27	277.83	378.12	393.52	388.52	327.81	297.48
74	E28a_E29a	KnownJunction	0	263.35	281.26	394.52	374.21	426.89	329.77	295.47
75	ER29a	ExonRegion	0	281.04	266.84	396.43	376.76	429.74	341.02	322.63
76	E29a_E30a	KnownJunction	0	254.79	233.32	393.45	337.39	396.05	320.66	280.64
77	ER30a	ExonRegion	0	321.37	223.87	424.71	310.60	474.15	332.09	303.72
78	E30a_E31a	KnownJunction	0	296.66	213.48	377.59	285.65	511.54	302.68	295.86
79	ER31a	ExonRegion	0	295.87	271.51	477.69	324.27	441.55	387.42	331.89
80	E31a_E32a	KnownJunction	0	323.18	248.08	443.87	278.69	492.80	328.08	271.31
81	ER32a	ExonRegion	0	292.44	276.44	458.01	346.61	447.29	343.11	310.08
82	E32a_E33a	KnownJunction	0	285.13	274.01	436.71	367.63	361.72	307.66	285.52
83	ER33a	ExonRegion	0	334.11	275.56	511.14	363.29	459.07	329.93	322.93
84	E33a_E34a	KnownJunction	0	282.58	288.49	467.42	410.38	474.63	371.26	335.73
85	ER34a	ExonRegion	0	257.79	256.48	444.63	349.03	450.98	338.68	339.80
86	E34a_E35a	KnownJunction	0	259.91	287.07	390.63	306.81	466.70	280.27	275.35
87	ER35a	ExonRegion	0	270.89	317.89	432.06	402.22	449.70	368.21	350.39
88	E35a_E36a	KnownJunction	0	195.51	224.78	335.83	381.39	400.36	337.06	305.57
89	ER36a	ExonRegion	0	202.45	317.56	338.82	418.96	401.93	390.24	332.04
90	E36a_E37a	KnownJunction	0	175.78	284.39	307.63	405.15	432.54	347.91	292.43
91	ER37a	ExonRegion	0	204.38	332.30	341.76	407.33	441.89	373.73	320.04
92	E37a_E38a	KnownJunction	0	150.41	289.98	242.33	376.54	431.32	334.06	283.52
93	ER38a	ExonRegion	0	208.86	336.50	338.31	438.48	608.52	423.47	406.67
94	E38a_E39a	KnownJunction	0	205.64	340.06	364.86	487.94	682.78	464.31	421.89
95	ER39a	ExonRegion	0	193.78	361.62	350.23	450.82	490.75	436.62	397.12
96	E39_Da	NovelBoundary	1	54.13	39.93	88.19	45.40	16.48	31.03	15.54
97	E39a_E40a	KnownJunction	0	140.95	365.99	245.68	414.95	438.90	420.65	367.89
98	I39	Intron	1	46.83	21.71	72.99	24.85	15.08	15.59	12.67
99	I39_AR1	ActiveIntronRegion	1	69.41	28.44	98.74	31.01	20.41	17.41	16.33
100	ER40a	ExonRegion	0	183.40	372.09	304.84	474.22	498.29	402.09	410.06
101	E40a_E41a	KnownJunction	0	217.67	373.92	349.07	504.63	514.77	407.97	412.07
102	ER41a	ExonRegion	0	266.46	417.12	417.51	512.30	646.60	539.40	443.99
103	E41a_E42a	KnownJunction	0	292.77	375.45	432.42	446.38	664.24	502.58	354.00
104	ER42a	ExonRegion	0	323.84	405.65	447.84	487.75	603.69	497.88	369.94
105	E42a_E43a	KnownJunction	0	360.80	444.75	470.50	575.82	613.51	601.92	400.49
106	ER43a	ExonRegion	0	365.43	452.84	536.40	552.73	563.02	603.31	391.56
107	E43a_E44a	KnownJunction	0	325.97	400.51	477.74	522.10	570.35	539.96	362.41
108	ER44a	ExonRegion	0	278.69	348.40	440.28	471.89	589.48	524.03	374.59
109	E44_Ab	KnownBoundary	0	257.13	289.14	421.27	434.49	555.67	505.07	353.91
110	ER44b	ExonRegion	0	259.92	361.55	432.40	487.44	545.42	572.38	393.53
111	E44a_E45a	KnownJunction	0	191.38	288.96	302.14	458.84	594.03	497.54	308.74
112	ER45a	ExonRegion	0	260.64	426.25	403.26	590.18	663.40	766.78	491.04
113	E45a_E46a	KnownJunction	0	276.40	422.39	385.99	519.72	698.22	760.23	485.98
114	ER46a	ExonRegion	0	263.72	436.29	427.18	558.32	569.70	695.52	394.17
115	E46a_E47a	KnownJunction	0	296.98	379.57	415.27	491.65	825.43	670.91	322.70
116	E46a_E51b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
117	ER47a	ExonRegion	0	336.10	372.43	445.91	497.17	583.50	567.13	310.81
118	E47a_E48a	KnownJunction	0	368.20	386.90	464.97	509.88	675.24	548.59	316.48
119	ER48a	ExonRegion	0	451.80	438.55	543.42	554.93	667.44	711.91	343.85
120	E48a_E49a	KnownJunction	0	476.26	460.85	568.45	673.81	648.87	786.12	364.35
121	ER49a	ExonRegion	0	558.90	461.55	674.89	686.21	779.93	917.69	403.64
122	E49a_E50a	KnownJunction	0	558.38	381.49	650.26	620.74	832.30	847.35	376.24
123	E50_Aa	NovelBoundary	1	210.18	7.28	258.62	12.92	2.97	27.28	6.85
124	ER50a	ExonRegion	0	441.71	328.35	545.64	549.22	691.60	782.25	348.52
125	E50_Da	NovelBoundary	0	74.22	44.11	81.49	39.44	46.57	46.79	40.16
126	E50a_E51a	KnownJunction	0	333.60	306.40	417.75	488.56	461.38	713.54	259.34
127	I50	Intron	0	46.58	39.30	53.12	37.39	25.41	53.11	22.64
128	I50_AR1	ActiveIntronRegion	0	46.66	39.37	53.21	37.46	25.45	53.20	22.68
129	ER51a	ExonRegion	0	322.47	380.97	382.65	508.92	414.33	863.59	252.10
130	E51_Ab	KnownBoundary	0	352.07	449.87	413.82	537.81	323.85	1046.50	257.87
131	ER51b	ExonRegion	0	331.06	448.39	390.32	485.66	340.17	913.95	254.94
132	ER51c	ExonRegion	0	125.23	189.21	153.07	198.95	191.01	380.28	114.91
133	E51_Db	KnownBoundary	0	14.42	17.81	25.44	15.82	40.16	29.67	14.75
134	ER51d	ExonRegion	0	8.05	14.86	16.88	18.82	24.48	35.89	10.13
135	ER51e	ExonRegion	0	3.07	2.43	2.03	2.49	8.91	3.68	2.70