Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LAMC3	Gene	0	0.23	0.02	2.44	0.95	21.62	10.34	0.06
2	320021	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	355048	Transcript	0	0	0	0	0	0	0	0
4	361069	Transcript	0	0.73	0.00	3.92	0.00	56.55	19.30	0.00
5	355452	Transcript	0	0.00	0.00	1.28	0.00	2.75	4.50	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.12	0.00
7	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	1.07	0.00
8	ER1b	ExonRegion	0	0.16	0.00	0.64	1.27	3.62	6.31	0.00
9	E1a_E2a	KnownJunction	0	0.00	0.00	1.60	0.00	7.86	13.35	0.00
10	ER2a	ExonRegion	0	0.01	0.00	1.27	0.40	12.52	11.86	0.00
11	E2a_E3a	KnownJunction	0	0.60	0.00	3.89	1.49	15.81	4.98	0.00
12	ER3a	ExonRegion	0	0.42	0.00	2.05	1.42	14.86	7.07	0.00
13	E3a_E4a	KnownJunction	0	0.00	0.00	0.86	1.52	15.05	4.96	0.00
14	ER4a	ExonRegion	0	0.00	0.00	0.13	0.90	9.87	7.73	0.00
15	E4a_E5a	KnownJunction	0	0.00	0.00	0.72	1.08	10.51	9.62	0.00
16	ER5a	ExonRegion	0	0.00	0.00	1.36	1.06	15.96	12.14	0.00
17	E5a_E6a	KnownJunction	0	0.00	0.00	3.56	0.00	14.32	17.74	0.00
18	ER6a	ExonRegion	0	0.00	0.00	3.53	1.61	19.75	10.74	0.00
19	E6a_E7a	KnownJunction	0	0.00	0.00	4.33	0.00	18.56	7.58	0.00
20	ER7a	ExonRegion	0	0.00	0.00	3.15	0.00	17.11	8.93	0.00
21	E7a_E8a	KnownJunction	0	0.00	0.00	3.65	0.00	23.95	2.09	0.00
22	ER8a	ExonRegion	0	0.00	0.35	3.73	0.44	23.74	3.90	0.00
23	E8_Da	KnownBoundary	0	0.00	1.16	4.38	1.27	19.23	10.93	0.00
24	E8a_E29b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER8b	ExonRegion	0	0.25	0.83	3.42	0.81	21.69	10.79	0.49
26	E8b_E9a	KnownJunction	0	1.02	0.00	1.52	0.00	15.28	1.66	0.57
27	ER9a	ExonRegion	0	0.72	0.00	3.21	0.00	14.89	6.94	0.30
28	E9a_E10a	KnownJunction	0	0.82	0.00	1.14	0.00	27.04	9.00	0.89
29	ER10a	ExonRegion	0	0.92	0.00	3.48	0.00	14.36	10.09	0.15
30	E10_Da	KnownBoundary	0	0.00	0.00	1.42	0.00	5.16	4.85	0.00
31	E10a_E10b	KnownJunction	0	0.00	0.00	2.56	0.00	5.51	9.00	0.00
32	E10_Ab	KnownBoundary	0	0.00	0.00	2.30	0.00	2.01	4.42	0.00
33	ER10b	ExonRegion	0	0.00	0.00	2.71	0.00	14.04	15.94	0.00
34	ER10c	ExonRegion	0	0.29	0.00	3.62	0.00	18.96	14.56	0.00
35	E10b_E11a	KnownJunction	0	0.72	0.00	2.46	0.00	32.76	13.43	0.00
36	E10b_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER11a	ExonRegion	0	0.77	0.00	2.71	0.00	27.13	15.32	0.00
38	ER11b	ExonRegion	0	0.59	0.00	1.46	0.00	19.41	15.36	0.00
39	E11a_E12a	KnownJunction	0	0.00	0.00	1.93	0.00	12.59	11.77	0.00
40	ER12a	ExonRegion	0	0.00	0.00	3.07	1.21	22.71	11.55	0.00
41	E12a_E13a	KnownJunction	0	0.00	0.00	3.85	1.27	16.55	9.49	0.00
42	ER13a	ExonRegion	0	0.00	0.00	2.16	1.11	20.10	9.27	0.00
43	E13a_E14a	KnownJunction	0	0.00	0.00	5.00	0.00	8.81	5.17	0.00
44	ER14a	ExonRegion	0	0.24	0.00	2.45	1.54	22.80	8.68	0.00
45	E14a_E15a	KnownJunction	0	0.00	0.00	3.95	0.00	23.81	10.99	0.00
46	ER15a	ExonRegion	0	0.00	0.00	1.68	1.20	20.61	9.83	0.00
47	E15a_E16a	KnownJunction	0	0.00	0.00	1.74	0.00	22.20	11.26	0.00
48	ER16a	ExonRegion	0	0.00	0.00	3.38	0.67	22.36	7.98	0.00
49	E16a_E17a	KnownJunction	0	0.00	0.00	2.70	1.44	17.82	7.24	0.00
50	ER17a	ExonRegion	0	0.00	0.00	3.32	1.00	25.81	8.71	0.29
51	E17a_E18a	KnownJunction	0	0.00	0.00	1.75	0.00	29.16	13.05	0.00
52	ER18a	ExonRegion	0	0.00	0.00	2.01	1.49	29.36	13.14	0.36
53	E18a_E19a	KnownJunction	0	0.00	0.00	1.87	1.08	26.46	12.76	0.00
54	ER19a	ExonRegion	0	0.65	0.00	2.98	0.82	31.23	14.80	0.25
55	E19a_E20a	KnownJunction	0	1.40	0.00	2.41	0.00	22.80	5.33	0.00
56	ER20a	ExonRegion	0	1.31	0.00	3.62	1.21	27.66	12.63	0.58
57	E20a_E21a	KnownJunction	0	0.00	0.00	3.56	0.00	32.97	17.82	0.59
58	ER21a	ExonRegion	0	0.91	0.00	3.58	2.02	23.52	13.56	0.27
59	E21a_E22a	KnownJunction	0	2.05	0.00	6.44	3.36	29.85	14.04	0.89
60	ER22a	ExonRegion	0	0.72	0.00	5.84	2.44	37.73	13.91	0.15
61	E22a_E23a	KnownJunction	0	0.85	0.00	1.57	1.44	13.67	13.91	0.00
62	ER23a	ExonRegion	0	0.87	0.00	4.28	1.45	38.26	18.88	0.00
63	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E23a_E25a	KnownJunction	0	0.73	0.00	3.92	0.00	56.55	19.30	0.00
65	E24_Aa	NovelBoundary	0	43.71	42.22	46.36	58.41	15.08	56.49	34.02
66	ER24a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E24_Da	NovelBoundary	0	1941.57	1241.59	1273.80	1116.61	809.04	943.81	1044.45
68	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER25a	ExonRegion	0	0.39	0.00	3.53	0.47	34.04	21.32	0.00
70	E25a_E26a	KnownJunction	0	1.03	0.00	4.40	1.68	32.14	23.99	0.00
71	ER26a	ExonRegion	0	0.23	0.00	2.77	0.94	50.02	28.06	0.00
72	E26a_E27a	KnownJunction	0	0.92	0.00	2.34	1.68	52.35	24.90	0.00
73	ER27a	ExonRegion	0	0.27	0.00	3.56	0.98	39.53	17.21	0.00
74	E27a_E28a	KnownJunction	0	0.00	0.00	2.34	0.00	54.20	7.29	0.00
75	ER28a	ExonRegion	0	0.58	0.00	3.82	2.00	49.30	12.03	0.00
76	E28a_E29a	KnownJunction	0	0.00	0.00	4.53	3.22	35.62	13.00	0.00
77	ER29a	ExonRegion	0	0.00	0.00	5.84	1.62	32.44	21.93	0.00
78	E29_Ab	KnownBoundary	0	0.00	0.00	6.48	1.68	28.79	25.62	0.00
79	ER29b	ExonRegion	0	0.00	0.00	5.53	1.15	31.50	22.48	0.00
80	E29_Da	KnownBoundary	0	0.00	0.00	7.76	2.79	64.92	27.52	0.00
81	ER29c	ExonRegion	0	0.00	0.00	5.03	0.33	43.04	14.89	0.00
82	E29_Db	KnownBoundary	0	0.00	0.00	2.49	0.00	29.46	6.49	0.00
83	ER29d	ExonRegion	0	0.10	0.00	1.38	0.69	16.30	3.20	0.00