Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C9orf3	Gene	0	15.96	6.57	22.48	69.09	13.20	26.35	24.38
2	277198	Transcript	0	2.93	0.00	0.31	0.00	0.73	0.00	3.07
3	395356	Transcript	0	0	0	0	0	0	0	0
4	297979	Transcript	0	0	0	0	0	0	0	0
5	395357	Transcript	0	0	0	0	0	0	0	0
6	375315	Transcript	0	0	0	0	0	0	0	0
7	375316	Transcript	0	2.35	0.00	2.14	0.79	0.50	0.00	0.40
8	375314	Transcript	0	3.51	2.34	1.10	19.75	1.34	3.48	2.01
9	ER1a	ExonRegion	0	0.58	0.00	0.23	0.00	0.61	0.00	0.34
10	ER1b	ExonRegion	0	5.24	0.28	3.33	0.64	10.57	1.38	7.28
11	E1a_E2a	KnownJunction	0	10.18	1.00	6.51	1.38	26.86	2.71	16.27
12	ER2a	ExonRegion	1	6.85	6.16	4.89	1.82	9.76	2.10	18.00
13	E2_Ab	KnownBoundary	1	3.04	7.33	2.70	4.90	4.22	2.44	12.12
14	ER2b	ExonRegion	0	10.57	6.36	11.77	6.23	16.99	4.26	20.67
15	E2_Ac	KnownBoundary	0	12.63	8.88	11.61	7.29	17.80	2.60	19.61
16	ER2c	ExonRegion	1	9.69	6.31	11.23	9.13	21.23	3.03	29.85
17	E2a_E3a	KnownJunction	1	7.63	0.00	7.31	8.53	6.29	1.23	24.32
18	ER3a	ExonRegion	1	7.33	1.66	9.44	6.40	15.82	1.36	24.97
19	E3a_E4a	KnownJunction	1	4.07	0.00	11.04	8.72	17.45	4.98	22.86
20	ER4a	ExonRegion	0	10.25	2.47	12.26	9.00	20.51	7.93	25.55
21	E4a_E5a	KnownJunction	1	8.58	1.05	14.90	10.32	20.63	15.54	30.76
22	I4_AR3	ActiveIntronRegion	1	7.40	2.10	2.34	19.80	0.63	1.41	0.39
23	ER5a	ExonRegion	0	11.20	3.35	11.54	21.78	17.33	9.77	17.40
24	E5a_E6a	KnownJunction	0	2.70	0.00	5.50	5.88	4.31	1.47	6.09
25	E5a_E9a	KnownJunction	0	3.00	0.00	5.06	5.77	4.24	4.66	6.16
26	I5_AR23	ActiveIntronRegion	1	9.85	0.85	2.71	0.00	2.50	0.49	2.48
27	ER6a	ExonRegion	0	7.48	0.97	3.54	5.87	4.99	1.36	7.21
28	E6a_E7a	KnownJunction	0	4.92	0.00	2.92	2.82	6.27	0.00	9.56
29	ER7a	ExonRegion	0	8.09	0.03	4.53	1.70	4.78	2.12	9.31
30	E7a_E8a	KnownJunction	0	3.19	0.00	0.89	0.00	0.00	0.00	6.41
31	E7a_E9a	KnownJunction	0	9.31	0.00	4.61	2.65	4.56	1.66	3.32
32	ER8a	ExonRegion	0	4.52	0.00	1.28	0.00	0.26	0.00	6.77
33	E8_Da	KnownBoundary	1	5.74	0.00	1.68	0.00	0.97	0.00	10.20
34	ER8b	ExonRegion	0	5.28	0.00	0.39	0.00	0.85	0.00	5.79
35	ER9a	ExonRegion	0	9.90	2.62	10.76	11.53	8.81	5.95	10.09
36	E9a_E10a	KnownJunction	0	12.73	0.00	10.88	9.02	8.99	1.66	10.23
37	ER10a	ExonRegion	0	12.29	2.54	12.39	13.53	10.73	6.44	13.84
38	E10a_E11a	KnownJunction	0	7.33	0.00	6.77	14.76	8.32	7.93	11.11
39	ER11a	ExonRegion	0	5.90	0.52	7.81	12.67	9.31	3.76	10.84
40	E11a_E12a	KnownJunction	0	5.32	1.31	7.37	8.18	8.25	2.89	8.03
41	ER12a	ExonRegion	0	4.86	2.13	4.74	11.65	3.96	2.93	8.16
42	E12a_E14a	KnownJunction	1	4.14	1.50	1.31	13.82	0.00	1.66	9.49
43	ER13a	ExonRegion	0	1.18	1.87	0.50	21.67	0.59	3.96	1.03
44	E13a_E14a	KnownJunction	0	5.84	2.81	1.70	17.83	2.10	3.00	3.00
45	ER14a	ExonRegion	0	9.31	5.13	7.26	39.90	2.98	16.46	9.32
46	E14a_E15a	KnownJunction	0	12.80	10.38	17.12	74.12	5.30	21.68	11.19
47	E15_Aa	NovelBoundary	0	1.47	0.00	2.39	6.18	0.00	17.15	0.89
48	ER15a	ExonRegion	0	17.50	12.94	39.41	142.94	9.38	52.67	25.92
49	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E15a_E17a	KnownJunction	0	33.78	12.11	75.33	190.23	18.53	74.88	45.83
51	E15a_E18a	NovelJunction	0	1.90	2.81	3.18	20.54	0.00	13.69	4.74
52	I15_SR2	SilentIntronRegion	0	10.80	0.00	5.97	4.04	0.25	0.00	2.92
53	ER16a	ExonRegion	0	4.70	0.00	4.28	1.58	1.01	0.00	0.81
54	E16_Da	NovelBoundary	1	20.71	1.44	6.45	2.49	0.00	0.00	1.40
55	I16_AR1	ActiveIntronRegion	0	11.54	0.78	8.61	1.90	1.01	1.08	1.20
56	I16_SR1	SilentIntronRegion	0	12.92	2.11	7.55	3.85	0.94	0.88	4.35
57	I16_AR3	ActiveIntronRegion	0	11.88	1.21	8.89	3.01	0.81	1.32	2.41
58	I16_SR3	SilentIntronRegion	0	13.76	3.35	9.23	3.72	0.44	1.20	3.75
59	I16_AR4	ActiveIntronRegion	0	17.59	1.63	10.30	4.36	1.47	0.56	5.33
60	I16_AR5	ActiveIntronRegion	0	7.95	0.00	9.35	1.75	0.81	0.00	3.10
61	I16_AR6	ActiveIntronRegion	0	19.11	2.43	10.84	2.81	4.86	2.45	11.47
62	I16_AR7	ActiveIntronRegion	0	20.06	2.01	10.53	4.99	3.49	2.45	10.51
63	I16_AR8	ActiveIntronRegion	0	13.90	1.06	8.07	4.65	1.65	1.27	4.63
64	I16_AR12	ActiveIntronRegion	0	16.96	4.20	18.53	21.91	2.43	6.62	6.53
65	I16_AR30	ActiveIntronRegion	1	3.40	2.44	5.77	44.55	0.31	17.59	9.10
66	ER17a	ExonRegion	0	31.69	15.99	78.00	294.27	23.68	93.59	59.96
67	E17a_E18a	KnownJunction	0	35.12	26.90	78.46	331.49	19.55	115.94	82.82
68	ER18a	ExonRegion	0	37.24	20.46	71.11	278.80	16.83	89.58	58.02
69	E18a_E19a	KnownJunction	0	14.87	12.35	32.62	114.49	14.11	65.66	26.17
70	E18a_E20a	NovelJunction	1	10.18	12.14	28.80	249.64	12.86	73.40	43.94
71	I18	Intron	0	8.10	3.34	12.05	16.66	1.21	3.27	9.86
72	I18_AR2	ActiveIntronRegion	1	9.84	3.66	12.52	26.27	1.41	2.17	11.11
73	I18_SR2	SilentIntronRegion	1	8.46	3.79	11.01	15.19	1.11	1.84	15.11
74	I18_AR3	ActiveIntronRegion	0	8.92	3.07	13.83	15.80	1.17	3.68	9.10
75	I18_AR4	ActiveIntronRegion	0	9.67	5.09	9.90	19.73	1.37	4.70	12.70
76	I18_SR3	SilentIntronRegion	1	8.64	7.25	14.41	22.60	0.96	6.80	13.16
77	I18_AR5	ActiveIntronRegion	0	5.59	6.82	6.87	14.55	0.20	4.99	7.99
78	E19_Aa	NovelBoundary	1	13.15	3.60	9.63	25.47	1.18	0.00	12.25
79	ER19a	ExonRegion	0	33.98	13.05	55.51	132.36	14.55	53.99	35.44
80	E19_Da	NovelBoundary	0	12.43	6.36	17.66	20.18	1.06	3.35	14.98
81	E19a_E20a	KnownJunction	1	43.23	10.85	58.44	102.73	12.77	54.11	16.45
82	I19	Intron	1	3.25	2.16	6.21	10.49	1.13	2.25	12.44
83	I19_AR1	ActiveIntronRegion	1	5.68	4.06	10.96	22.43	2.29	4.46	16.05
84	I19_AR2	ActiveIntronRegion	1	5.58	1.69	6.94	11.18	1.19	1.23	9.94
85	I19_SR1	SilentIntronRegion	1	0.71	1.42	3.37	3.70	0.36	1.21	11.94
86	I19_AR3	ActiveIntronRegion	1	1.22	0.42	1.72	0.32	0.71	2.22	8.77
87	I19_AR3	ActiveIntronRegion	1	0.77	0.00	4.36	6.23	0.03	1.23	11.90
88	I19	Intron	1	0.85	0.58	3.93	8.47	0.59	0.76	8.30
89	I19_SR1	SilentIntronRegion	1	1.42	0.48	3.88	10.27	0.60	0.74	10.16
90	I19	Intron	0	6.16	2.64	10.02	17.87	4.70	3.60	8.96
91	I19_AR1	ActiveIntronRegion	0	6.18	2.65	10.05	17.93	4.71	3.61	8.99
92	E20_Aa	NovelBoundary	0	15.20	4.12	14.66	29.94	10.35	11.87	10.48
93	ER20a	ExonRegion	0	41.17	15.41	61.31	264.28	16.30	103.18	51.22