Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C9orf48	Gene	0	3.57	3.55	4.20	9.98	17.74	8.96	3.67
2	379166	Transcript	0	0	0	0	0	0	0	0
3	345050	Transcript	0	0	0	0	0	0	0	0
4	403891	Transcript	0	0	0	0	0	0	0	0
5	402558	Transcript	0	0.18	0.00	0.00	0.00	0.88	0.28	0.16
6	379174	Transcript	0	0	0	0	0	0	0	0
7	379171	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	1.88	0.97	0.00	2.18	9.53	3.69	1.60
9	E1a_E3a	KnownJunction	0	2.07	0.00	0.00	1.33	7.58	4.88	0.00
10	ER2a	ExonRegion	0	0.36	0.00	0.00	0.00	1.76	0.57	0.31
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER3a	ExonRegion	0	4.98	3.35	1.81	6.46	21.12	5.48	2.72
13	E3a_E4a	KnownJunction	0	0.93	2.71	2.08	1.68	21.09	1.02	3.50
14	ER4a	ExonRegion	0	3.75	2.14	1.73	4.61	18.41	2.97	4.16
15	E4a_E5a	KnownJunction	0	2.22	0.00	0.53	1.35	10.63	0.00	5.33
16	E4a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	2.35	0.00	0.00
17	ER5a	ExonRegion	0	2.30	2.70	1.08	3.47	12.40	0.00	3.60
18	E5a_E6a	KnownJunction	1	3.30	4.39	0.79	9.32	7.58	0.00	1.55
19	ER6a	ExonRegion	0	3.05	2.73	2.19	7.47	18.59	5.00	2.64
20	E6a_E7a	KnownJunction	0	5.01	1.08	2.00	4.96	12.36	1.34	1.66
21	ER7a	ExonRegion	0	4.29	2.95	2.36	5.20	18.12	4.39	3.37
22	E7_Da	NovelBoundary	0	2.07	4.07	1.48	7.42	1.18	17.13	0.00
23	E7a_E8a	KnownJunction	0	1.67	0.00	3.71	2.74	13.05	2.39	3.11
24	E8_Aa	NovelBoundary	0	0.00	0.00	2.00	6.45	0.00	13.80	0.00
25	ER8a	ExonRegion	0	3.39	0.76	2.37	4.67	13.44	7.71	1.33
26	E8_Da	NovelBoundary	1	1.02	0.00	0.83	8.83	0.00	34.97	0.00
27	E8a_E9a	KnownJunction	0	0.62	0.00	1.41	1.49	6.85	0.00	0.54
28	I8	Intron	0	2.02	3.04	3.37	11.81	0.25	17.31	0.46
29	I8_SR1	SilentIntronRegion	0	2.02	3.04	3.38	11.83	0.25	17.33	0.46
30	ER9a	ExonRegion	0	1.25	0.84	3.03	4.49	12.39	4.40	2.51
31	E9a_E10a	KnownJunction	0	0.77	0.00	3.10	1.49	14.06	0.00	4.64
32	I9	Intron	0	1.75	2.42	3.38	10.10	0.87	16.77	0.23
33	I9_SR1	SilentIntronRegion	0	1.75	2.42	3.39	10.10	0.87	16.79	0.23
34	E10_Aa	NovelBoundary	0	0.90	4.02	1.95	18.69	3.20	29.10	2.24
35	ER10a	ExonRegion	0	0.85	2.43	3.03	4.59	15.88	6.06	2.36
36	E10_Da	NovelBoundary	0	1.03	0.00	12.30	30.04	0.00	26.85	0.00
37	E10a_E11a	KnownJunction	0	1.03	0.00	3.15	1.08	11.09	0.00	0.89
38	I10	Intron	0	2.39	1.74	3.92	8.25	1.49	13.65	0.41
39	I10_SR1	SilentIntronRegion	0	2.39	1.75	3.93	8.27	1.50	13.69	0.41
40	E11_Aa	NovelBoundary	0	2.07	1.18	6.67	12.35	0.00	9.62	2.32
41	ER11a	ExonRegion	0	0.59	1.68	3.31	8.58	19.29	14.75	5.32
42	E11_Da	NovelBoundary	0	2.75	1.34	5.58	9.02	1.15	5.71	2.44
43	E11a_E12a	KnownJunction	0	0.00	0.00	3.00	4.20	14.64	2.41	5.22
44	I11	Intron	0	1.77	1.91	4.42	10.69	0.81	8.68	0.74
45	I11_SR1	SilentIntronRegion	0	1.77	1.91	4.43	10.71	0.81	8.69	0.74
46	E12_Aa	NovelBoundary	0	3.59	2.55	9.25	7.99	1.84	7.48	2.38
47	ER12a	ExonRegion	0	2.21	4.07	4.25	11.41	14.21	12.04	4.03
48	E12_Ab	KnownBoundary	0	2.39	2.34	9.11	14.47	13.95	17.61	3.35
49	ER12b	ExonRegion	0	2.87	5.44	4.96	16.68	19.55	12.55	5.80
50	E12_Da	KnownBoundary	0	0.00	2.81	4.38	10.65	18.00	6.75	4.50
51	E12a_E12c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER12c	ExonRegion	0	2.37	3.09	3.55	11.46	18.54	8.69	3.90
53	E12_Ac	KnownBoundary	0	3.92	2.92	5.04	11.27	25.15	7.96	3.50
54	ER12d	ExonRegion	0	3.53	5.05	5.71	8.05	20.48	7.59	4.32
55	E12_Db	NovelBoundary	0	2.74	3.18	3.28	14.66	0.00	7.42	0.89
56	E12b_E13a	KnownJunction	0	1.29	0.00	2.27	5.01	22.75	6.16	4.50
57	I12	Intron	0	0.92	3.21	3.41	10.12	1.22	4.90	0.72
58	I12_SR1	SilentIntronRegion	0	0.93	3.21	3.42	10.16	1.22	4.91	0.72
59	ER13a	ExonRegion	0	1.95	2.38	2.91	5.49	18.60	6.51	4.65
60	E13_Da	NovelBoundary	0	1.99	2.73	3.09	11.38	0.00	8.84	1.22
61	E13a_E14a	KnownJunction	0	0.00	4.23	0.00	1.11	13.88	2.14	2.46
62	I13	Intron	0	1.20	2.18	4.55	11.18	2.38	8.11	0.74
63	I13_SR1	SilentIntronRegion	0	1.21	2.19	4.57	11.22	2.39	8.14	0.75
64	E14_Aa	NovelBoundary	0	4.29	1.21	3.91	19.59	2.03	13.37	0.70
65	ER14a	ExonRegion	0	5.09	3.91	6.11	11.95	20.08	10.12	3.66