Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	GLI4	Gene	0	9.04	10.17	6.28	2.93	12.87	5.49	28.46
2	340042	Transcript	0	8.99	6.75	5.36	1.80	10.00	3.39	23.90
3	344692	Transcript	0	1.51	0.47	1.45	0.00	2.88	0.00	3.76
4	ER1a	ExonRegion	0	3.79	1.27	4.32	0.00	5.23	0.46	3.71
5	E1a_E2a	KnownJunction	0	12.70	2.94	10.65	0.00	15.58	1.10	11.02
6	I1	Intron	0	4.13	1.21	4.54	1.30	5.01	0.61	7.77
7	I1_AR1	ActiveIntronRegion	0	7.29	1.55	7.44	2.00	7.11	1.27	8.76
8	I1_SR2	SilentIntronRegion	0	3.82	1.70	4.49	2.16	8.16	0.00	10.12
9	ER2a	ExonRegion	0	8.72	4.41	6.63	2.65	12.32	2.67	31.66
10	E2_Da	NovelBoundary	0	4.21	0.00	9.17	0.00	4.38	3.75	9.69
11	E2a_E3a	KnownJunction	0	12.32	4.76	4.28	1.68	6.87	6.59	44.44
12	I2_SR2	SilentIntronRegion	0	4.37	1.25	3.50	1.02	4.66	0.58	7.60
13	E3_Aa	NovelBoundary	0	4.96	1.55	3.02	1.46	3.07	0.00	10.07
14	ER3a	ExonRegion	0	15.84	7.07	6.10	3.25	13.39	3.91	33.74
15	E3_Da	NovelBoundary	0	1.03	0.00	2.24	0.00	2.05	0.00	9.95
16	E3a_E6a	KnownJunction	0	3.12	11.19	1.32	1.03	4.01	0.00	18.67
17	ER4a	ExonRegion	0	3.03	0.46	2.91	0.00	5.10	0.00	6.84
18	E4_Da	NovelBoundary	0	7.09	2.55	0.83	4.33	3.16	0.00	13.82
19	I4	Intron	0	8.68	1.54	4.35	1.32	9.94	0.26	14.41
20	I4_AR1	ActiveIntronRegion	0	8.73	1.55	4.37	1.33	9.99	0.26	14.49
21	ER5a	ExonRegion	0	0.00	0.49	0.00	0.00	0.65	0.00	0.67
22	I5	Intron	0	8.57	0.35	3.87	2.49	13.82	0.00	10.58
23	I5_AR1	ActiveIntronRegion	0	9.01	0.00	4.47	3.36	16.15	0.00	11.24
24	I5_AR2	ActiveIntronRegion	0	16.96	0.00	5.63	6.23	25.35	0.00	21.64
25	I5_AR3	ActiveIntronRegion	0	13.10	0.00	7.70	6.12	22.57	0.00	21.31
26	I5_AR4	ActiveIntronRegion	0	11.46	0.00	9.48	6.23	18.15	0.00	16.07
27	I5_SR1	SilentIntronRegion	0	9.72	0.00	3.54	1.80	13.79	0.00	9.63
28	I5_AR5	ActiveIntronRegion	0	5.44	1.11	2.30	1.11	9.24	0.00	7.86
29	ER6a	ExonRegion	0	9.00	14.10	5.50	4.38	12.22	6.48	28.07
30	E6_Ab	KnownBoundary	0	41.67	54.67	46.42	18.45	46.47	40.66	97.55
31	ER6b	ExonRegion	0	17.53	19.78	16.05	4.43	29.35	12.39	66.45
32	E6_Da	KnownBoundary	0	20.33	12.98	15.79	3.31	19.83	8.71	54.73
33	ER6c	ExonRegion	0	6.41	8.30	4.05	1.44	10.34	5.87	19.88