Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HEATR7A	Gene	0	54.94	77.44	47.58	92.77	18.11	16.91	87.28
2	356585	Transcript	0	9.39	5.33	7.27	9.83	1.99	1.16	24.63
3	398656	Transcript	0	18.93	19.12	19.84	33.34	3.58	1.98	16.53
4	326134	Transcript	0	8.19	14.35	6.40	19.41	1.38	2.91	12.25
5	ER1a	ExonRegion	0	3.88	1.67	5.13	5.74	0.44	0.58	7.76
6	E1a_E3a	KnownJunction	1	21.53	4.39	15.35	20.89	1.13	1.61	29.88
7	E1a_E4a	NovelJunction	1	27.84	35.34	10.09	30.80	6.41	4.74	36.63
8	E2_Aa	NovelBoundary	0	7.94	8.04	5.92	20.64	0.00	10.59	8.31
9	ER2a	ExonRegion	0	0.96	1.68	1.64	6.01	0.01	0.00	0.36
10	E2a_E4a	KnownJunction	0	1.35	4.36	4.30	13.25	0.00	1.02	0.67
11	I2_SR4	SilentIntronRegion	0	14.60	4.56	7.87	2.49	3.04	1.84	6.07
12	ER3a	ExonRegion	0	19.55	9.65	16.93	18.29	6.12	4.00	34.46
13	E3_Ab	KnownBoundary	0	19.33	18.02	19.30	19.80	9.31	8.17	43.74
14	ER3b	ExonRegion	0	15.66	19.42	11.47	26.90	4.05	9.03	34.91
15	E3a_E4a	KnownJunction	0	17.27	23.12	8.77	34.46	2.35	4.40	35.01
16	ER4a	ExonRegion	0	55.35	67.69	39.63	91.80	15.43	15.18	105.22
17	E4a_E5a	KnownJunction	0	78.64	74.77	42.90	112.78	7.47	22.40	113.26
18	ER5a	ExonRegion	0	57.84	101.35	41.15	120.56	19.99	27.53	124.89
19	E5a_E6a	KnownJunction	0	78.36	125.13	56.23	165.12	37.46	31.60	186.65
20	I5_SR2	SilentIntronRegion	0	16.83	6.85	9.42	5.92	2.22	2.25	10.57
21	ER6a	ExonRegion	0	82.03	148.59	66.64	160.54	30.95	34.66	196.80
22	E6a_E7a	KnownJunction	0	65.22	143.55	64.93	175.20	22.20	27.58	173.58
23	ER7a	ExonRegion	0	75.52	153.36	58.67	183.26	30.42	35.86	208.38
24	E7a_E8a	KnownJunction	0	70.98	138.03	60.34	176.47	29.81	29.21	187.43
25	ER8a	ExonRegion	0	75.02	153.59	58.84	153.53	27.11	33.25	199.33
26	E8a_E9a	KnownJunction	0	104.05	143.89	82.40	199.61	41.54	29.16	249.57
27	ER9a	ExonRegion	0	80.30	140.40	70.64	165.18	37.91	36.30	198.94
28	E9a_E10a	KnownJunction	0	53.61	112.28	55.31	148.11	28.47	20.21	149.02
29	ER10a	ExonRegion	0	79.64	136.66	80.76	159.53	28.22	38.03	169.24
30	E10a_E11a	KnownJunction	0	76.87	136.32	70.08	153.58	26.42	37.73	163.25
31	ER11a	ExonRegion	0	84.42	119.67	82.87	151.61	32.86	29.11	156.98
32	E11a_E12a	KnownJunction	0	117.95	110.92	109.27	119.77	42.53	27.58	172.18
33	ER12a	ExonRegion	0	97.70	101.36	88.57	124.03	32.77	30.71	161.20
34	E12a_E13a	KnownJunction	0	86.99	99.20	73.22	164.58	24.51	41.75	160.68
35	ER13a	ExonRegion	0	93.20	104.24	77.99	139.74	24.89	27.70	148.11
36	E13a_E15a	KnownJunction	0	108.10	126.23	92.77	149.52	27.82	25.14	122.81
37	E13b_E14a	KnownJunction	1	1.84	4.70	0.89	4.96	0.00	0.00	22.47
38	ER13b	ExonRegion	1	2.31	5.47	1.35	4.99	0.00	0.00	22.09
39	E14_Aa	NovelBoundary	0	16.14	1.52	5.58	6.50	0.00	0.00	17.27
40	ER14a	ExonRegion	1	7.24	6.09	3.96	4.09	4.27	0.75	31.13
41	E14_Da	NovelBoundary	1	9.00	7.15	6.73	6.53	5.23	3.46	45.47
42	ER15a	ExonRegion	0	92.84	127.63	82.38	160.40	31.65	30.00	113.07
43	E15a_E16a	KnownJunction	0	81.11	95.71	75.90	169.35	38.89	23.10	113.66
44	ER16a	ExonRegion	0	86.78	111.66	76.56	128.88	22.87	18.24	107.19
45	E16a_E17a	KnownJunction	0	76.81	93.61	70.99	118.77	22.64	21.49	106.68
46	ER17a	ExonRegion	0	76.82	92.90	67.96	143.55	23.85	18.53	117.27
47	E17a_E18a	KnownJunction	0	105.30	96.52	92.36	130.47	45.64	21.09	120.58
48	ER18a	ExonRegion	0	70.16	107.65	58.87	125.84	24.99	15.88	107.49
49	E18a_E19a	KnownJunction	0	60.07	86.59	56.71	123.45	24.09	21.25	89.17
50	ER19a	ExonRegion	0	79.82	91.20	71.55	126.64	17.13	17.64	97.14
51	E19_Da	NovelBoundary	0	5.21	22.20	4.08	16.15	0.00	1.31	3.53
52	E19a_E20a	KnownJunction	0	75.96	74.16	71.69	92.68	18.47	8.98	89.37
53	ER20a	ExonRegion	0	89.63	116.39	73.99	141.14	25.65	25.46	118.53
54	E20_Da	NovelBoundary	0	15.09	18.28	11.51	13.76	2.10	2.12	13.46
55	E20a_E21a	KnownJunction	0	48.78	103.67	61.19	108.93	23.05	26.83	89.20
56	ER21a	ExonRegion	0	54.88	110.07	59.29	114.74	30.99	20.80	113.59
57	E21_Da	NovelBoundary	1	16.09	26.11	23.83	38.88	3.97	7.53	5.09
58	E21a_E22a	KnownJunction	0	60.68	95.02	65.31	113.57	33.43	12.81	123.72
59	I21	Intron	0	13.75	23.23	11.88	33.18	1.28	5.82	8.82
60	I21_AR1	ActiveIntronRegion	0	13.82	23.34	11.93	33.33	1.28	5.84	8.86
61	E22_Aa	NovelBoundary	0	27.12	42.93	31.13	58.90	5.35	4.45	14.56
62	ER22a	ExonRegion	0	76.77	122.60	75.08	158.98	30.42	15.54	132.87
63	E22a_E23a	KnownJunction	1	84.60	155.68	77.54	176.36	23.17	14.95	131.02
64	ER23a	ExonRegion	0	73.71	134.29	89.28	154.74	27.44	22.20	117.01
65	E23a_E24a	KnownJunction	0	69.46	125.16	79.28	160.41	28.33	16.19	103.17
66	ER24a	ExonRegion	0	87.26	119.96	90.76	138.52	31.55	14.75	112.38
67	E24a_E25a	KnownJunction	0	106.52	100.59	98.49	113.32	29.95	18.97	112.37
68	I24_AR1	ActiveIntronRegion	0	5.34	12.52	7.49	25.80	0.00	3.60	0.94
69	E25_Aa	NovelBoundary	0	9.85	23.83	12.36	50.96	0.00	9.73	1.95
70	ER25a	ExonRegion	0	85.58	118.49	84.12	140.73	26.36	18.02	114.57
71	E25a_E26a	KnownJunction	0	24.40	49.68	23.62	54.72	7.88	8.12	56.64
72	E25a_E27a	KnownJunction	1	66.76	65.49	66.87	111.26	13.16	6.89	59.13
73	E26a_E27a	KnownJunction	1	28.86	45.82	21.61	41.18	4.96	1.58	48.14
74	ER26a	ExonRegion	0	35.75	61.87	28.48	58.47	6.54	6.63	70.51
75	ER27a	ExonRegion	0	88.83	122.78	93.99	153.56	27.87	26.24	135.68
76	E27a_E28a	KnownJunction	0	84.62	117.83	110.23	147.94	29.62	26.77	148.27
77	ER28a	ExonRegion	0	124.54	143.75	118.98	148.14	39.09	27.86	172.72
78	E28a_E29a	KnownJunction	0	132.47	135.46	97.23	141.31	41.13	24.25	174.91
79	ER29a	ExonRegion	0	98.03	159.42	95.41	166.39	27.99	23.43	147.15
80	E29a_E30a	KnownJunction	0	126.59	165.48	119.17	206.68	30.75	22.97	181.85
81	ER30a	ExonRegion	0	133.55	162.73	102.28	199.09	36.41	29.08	172.82
82	E30a_E31a	KnownJunction	0	120.84	160.60	78.30	187.61	44.12	28.17	134.27
83	ER31a	ExonRegion	0	101.41	127.24	91.26	141.36	40.08	27.24	129.62
84	E31a_E32a	KnownJunction	0	122.85	138.95	105.88	144.21	36.35	25.30	152.27
85	E31a_E34a	NovelJunction	0	0.00	0.00	0.00	8.43	0.00	0.00	0.75
86	ER32a	ExonRegion	0	130.26	138.58	79.21	158.23	35.10	43.93	135.25
87	E32a_E33a	KnownJunction	1	155.10	115.96	95.59	123.02	27.48	26.53	104.35
88	ER33a	ExonRegion	0	90.65	142.08	71.92	166.14	35.98	39.46	95.23
89	E33a_E34a	KnownJunction	0	123.89	111.86	112.33	160.98	46.94	43.95	154.74
90	ER34a	ExonRegion	0	89.04	60.38	61.43	73.60	23.90	14.90	67.18
91	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
92	ER35a	ExonRegion	0	25.54	12.38	18.10	17.77	8.11	1.08	16.77
93	E35_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
94	E35a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
95	ER35b	ExonRegion	0	6.67	4.94	6.55	2.84	1.13	0.00	5.98
96	E35_Db	NovelBoundary	1	43.24	10.30	41.77	10.57	10.70	0.00	14.83
97	ER36a	ExonRegion	0	0.28	0.00	0.31	0.72	0.24	0.56	0.31
98	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
99	ER37a	ExonRegion	0	0.30	0.00	0.00	0.71	0.00	0.47	0.00
100	E37a_E38a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
101	ER38a	ExonRegion	0	0.05	0.00	0.00	0.52	0.00	0.68	0.00
102	E38a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
103	ER39a	ExonRegion	0	0.45	0.00	0.00	0.00	0.00	0.33	0.00
104	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
105	ER40a	ExonRegion	0	0.00	0.00	0.24	0.64	0.00	0.37	0.00
106	E40a_E41a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
107	ER41a	ExonRegion	0	0.31	0.14	0.09	0.00	0.00	0.00	0.00
108	E41a_E42a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
109	ER42a	ExonRegion	0	0.33	1.03	0.20	1.49	1.26	0.00	1.08
110	E42a_E43a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
111	ER43a	ExonRegion	1	13.47	10.74	11.24	35.86	1.66	4.26	15.52
112	E43a_E44a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
113	ER44a	ExonRegion	0	20.07	36.98	14.48	51.74	2.55	9.77	19.35
114	E44a_E45a	KnownJunction	0	51.30	82.91	37.88	138.44	7.49	21.73	57.14
115	E44a_E46a	NovelJunction	0	2.04	2.78	1.38	11.27	0.00	1.31	3.28
116	ER45a	ExonRegion	0	20.97	53.45	16.37	78.14	2.01	12.37	29.55
117	E45a_E46a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
118	ER46a	ExonRegion	0	8.33	16.21	5.50	22.56	0.00	5.83	7.95
119	IG8	Intergenic	0	4.85	4.47	6.03	8.88	0.85	2.59	11.37
120	IG8_SR1	SilentIntergenicRegion	0	6.72	9.13	11.37	16.09	1.21	6.95	20.87
121	IG8_SR2	SilentIntergenicRegion	0	7.26	4.78	4.86	8.21	0.81	0.80	8.77