Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ZNF706	Gene	0	61.52	175.95	89.51	100.77	82.03	192.67	112.58
2	395944	Transcript	1	13.17	45.03	10.02	29.28	14.99	29.51	44.80
3	311212	Transcript	0	128.16	524.40	96.83	266.96	45.85	578.66	168.14
4	IG11_AR3	ActiveIntergenicRegion	0	13.60	17.44	26.04	16.40	4.31	18.55	8.81
5	IG11_SR3	SilentIntergenicRegion	0	30.65	29.96	54.83	48.86	5.46	38.55	14.15
6	IG11_AR2	ActiveIntergenicRegion	0	6.11	21.14	5.28	21.63	0.40	23.41	2.45
7	IG11_SR2	SilentIntergenicRegion	0	1.60	14.46	1.21	5.97	0.20	9.44	1.81
8	IG11_AR1	ActiveIntergenicRegion	0	0.77	9.72	0.00	1.25	0.81	1.23	1.35
9	ER1a	ExonRegion	0	34.07	170.07	22.56	97.93	53.42	154.09	56.24
10	E1a_E2a	KnownJunction	1	1.03	4.89	0.62	5.23	2.10	0.00	15.66
11	E1a_E3a	KnownJunction	0	128.16	524.40	96.83	266.96	45.85	578.66	168.14
12	I1	Intron	0	62.88	42.72	47.69	27.53	17.13	27.47	30.04
13	I1_AR1	ActiveIntronRegion	0	63.77	43.33	48.37	27.92	17.37	27.86	30.47
14	E2_Aa	NovelBoundary	0	18.63	46.95	24.77	38.06	10.79	34.60	24.54
15	ER2a	ExonRegion	1	25.43	55.12	18.03	31.86	25.44	34.49	56.45
16	E2_Da	NovelBoundary	1	275.88	118.96	130.77	95.17	75.04	98.14	53.84
17	E2a_E3a	KnownJunction	1	13.05	75.08	11.41	50.77	17.43	54.03	62.30
18	I2	Intron	0	16.94	9.60	9.40	7.04	2.16	5.54	4.21
19	I2_SR2	SilentIntronRegion	0	15.45	9.16	7.15	5.41	2.54	4.24	3.12
20	I2_AR1	ActiveIntronRegion	0	29.20	17.01	15.35	11.85	2.43	9.81	7.42
21	I2_SR3	SilentIntronRegion	0	21.71	12.59	13.40	10.00	2.22	8.37	6.66
22	E3_Aa	NovelBoundary	1	25.94	25.22	21.35	13.82	0.95	19.97	3.27
23	ER3a	ExonRegion	0	296.26	913.42	328.70	524.83	388.94	1023.93	517.02
24	E3_Da	NovelBoundary	1	23.22	43.74	23.22	11.16	1.18	13.05	5.39
25	E3a_E4a	KnownJunction	0	416.20	1163.67	572.59	695.46	390.68	1371.24	812.98
26	E3a_E5a	NovelJunction	0	3.79	13.69	4.38	10.57	0.00	5.60	0.73
27	I3	Intron	1	28.67	19.02	20.47	7.08	1.99	11.73	3.73
28	I3_AR1	ActiveIntronRegion	0	19.18	17.05	17.77	5.39	2.25	9.38	3.06
29	I3_SR1	SilentIntronRegion	0	27.23	23.71	13.80	7.79	1.09	9.64	4.50
30	I3_SR2	SilentIntronRegion	1	32.78	17.35	24.67	6.93	2.31	13.89	2.94
31	I3_AR2	ActiveIntronRegion	1	43.39	20.45	26.95	9.92	1.97	15.75	5.25
32	E4_Aa	NovelBoundary	1	46.95	17.34	40.87	17.15	7.12	5.25	7.78
33	ER4a	ExonRegion	0	380.14	1084.43	508.07	636.19	437.75	1232.69	717.87
34	E4_Da	NovelBoundary	1	21.80	10.53	14.60	2.98	2.97	0.00	2.48
35	E4a_E5a	KnownJunction	0	311.02	1059.24	451.27	547.59	373.59	1053.15	592.65
36	I4_SR1	SilentIntronRegion	0	16.01	11.97	14.30	3.59	1.31	8.79	1.88
37	ER5a	ExonRegion	0	36.86	92.55	66.88	52.06	52.28	103.34	68.25
38	IG10_AR9	ActiveIntergenicRegion	0	7.93	15.11	21.06	29.51	3.70	50.76	13.65
39	IG10_SR8	SilentIntergenicRegion	0	6.64	9.64	11.68	13.33	2.48	17.08	4.98
40	IG10_AR8	ActiveIntergenicRegion	0	3.49	8.07	10.99	8.50	1.91	15.67	3.02
41	IG10_AR6	ActiveIntergenicRegion	0	5.77	16.03	17.22	23.77	3.06	39.60	7.38
42	IG10_SR6	SilentIntergenicRegion	0	9.18	15.53	20.07	20.86	4.06	22.20	7.18
43	IG10_AR5	ActiveIntergenicRegion	0	5.65	8.73	14.41	13.29	2.85	20.32	6.49
44	IG10_SR5	SilentIntergenicRegion	0	5.44	6.95	23.07	14.19	4.76	13.17	4.37
45	IG10_AR4	ActiveIntergenicRegion	0	9.99	11.81	25.80	17.36	4.90	27.28	6.68
46	IG10_SR4	SilentIntergenicRegion	0	8.85	17.73	19.25	23.74	4.77	38.53	8.88
47	IG10_AR3	ActiveIntergenicRegion	0	5.24	10.08	6.76	17.07	5.49	30.29	7.86
48	IG10_AR2	ActiveIntergenicRegion	0	4.15	12.39	13.60	23.06	4.14	40.91	4.63