Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HMBOX1	Gene	0	75.84	44.05	69.12	31.88	18.64	37.71	33.14
2	403668	Transcript	0	33.19	16.66	27.95	16.14	11.25	20.59	16.53
3	287701	Transcript	0	0	0	0	0	0	0	0
4	355231	Transcript	0	3.69	1.60	0.79	1.65	0.00	0.00	1.53
5	397358	Transcript	0	33.03	18.78	31.19	11.64	8.49	14.09	12.78
6	ER1a	ExonRegion	0	19.19	12.38	12.41	12.21	4.82	10.50	5.39
7	E1a_E4b	KnownJunction	0	46.88	24.27	49.32	18.23	22.20	15.89	18.89
8	ER2a	ExonRegion	0	3.84	2.94	2.28	4.96	0.66	4.17	0.98
9	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E3a_E4b	KnownJunction	0	3.69	1.60	0.79	1.65	0.00	0.00	1.53
11	ER3a	ExonRegion	0	2.43	1.18	0.83	1.93	0.00	0.00	0.30
12	ER4a	ExonRegion	0	15.37	9.31	16.93	5.40	6.48	5.31	6.97
13	ER4b	ExonRegion	0	63.48	45.63	57.18	29.23	13.87	25.22	24.35
14	E4a_E5a	KnownJunction	0	69.10	61.05	64.38	39.58	14.34	33.71	27.99
15	ER5a	ExonRegion	0	86.31	78.71	88.52	59.42	25.44	66.67	49.95
16	E5a_E6a	KnownJunction	0	92.41	63.63	84.21	34.84	31.17	34.41	40.54
17	E5a_E7a	NovelJunction	0	5.14	9.80	4.21	2.68	0.00	10.13	0.89
18	ER6a	ExonRegion	0	111.25	58.82	102.45	45.54	23.04	53.70	50.14
19	E6a_E7a	KnownJunction	0	83.25	54.28	85.99	49.14	18.21	50.36	47.67
20	ER7a	ExonRegion	0	76.08	62.37	78.37	48.28	18.00	44.41	41.49
21	E7a_E8a	KnownJunction	0	107.33	43.98	82.66	48.68	23.49	59.36	46.02
22	ER8a	ExonRegion	0	81.75	43.81	78.88	30.98	17.45	33.44	32.56
23	E8a_E9a	KnownJunction	0	82.45	38.36	80.57	20.89	19.25	32.96	28.18
24	ER9a	ExonRegion	0	66.24	33.06	81.65	24.98	24.04	22.69	34.82
25	E9a_E10a	KnownJunction	0	67.16	36.44	63.43	15.17	18.44	18.33	35.01
26	ER10a	ExonRegion	0	81.85	34.47	74.89	30.64	18.59	53.62	36.93
27	E10a_E11a	KnownJunction	0	35.77	33.08	31.57	19.67	12.13	28.33	20.01
28	E10a_E11b	KnownJunction	1	48.18	12.98	37.87	15.47	7.75	33.12	15.23
29	ER11a	ExonRegion	0	52.45	32.80	44.37	24.32	13.77	36.17	27.49
30	ER11b	ExonRegion	0	83.16	45.80	66.46	30.86	27.19	41.81	51.45
31	E11a_E12a	KnownJunction	0	35.30	23.88	28.31	20.75	18.77	15.09	18.53
32	E11a_E13a	KnownJunction	1	26.50	23.72	22.30	8.43	4.43	7.16	21.57
33	ER12a	ExonRegion	0	16.08	13.12	17.69	12.20	7.25	13.56	15.81
34	E12_Da	NovelBoundary	0	30.46	9.67	24.37	16.12	10.24	14.85	9.36
35	E12a_E13a	NovelJunction	0	3.07	1.63	2.64	1.68	0.00	8.23	1.78
36	I12	Intron	0	18.32	7.41	15.27	6.37	2.31	5.64	3.04
37	I12_AR2	ActiveIntronRegion	0	16.34	14.13	16.38	8.82	1.99	8.37	3.73
38	I12_SR2	SilentIntronRegion	0	18.64	5.29	14.87	6.04	1.35	3.93	2.16
39	I12_AR3	ActiveIntronRegion	1	40.47	8.50	25.06	7.07	2.43	8.58	2.47
40	I12_AR4	ActiveIntronRegion	0	26.90	6.26	21.38	3.32	3.80	7.71	2.99
41	E13_Aa	NovelBoundary	0	13.47	12.77	9.63	7.69	1.96	3.83	3.18
42	ER13a	ExonRegion	0	108.77	52.58	93.93	41.80	30.06	52.78	53.18
43	E13_Da	KnownBoundary	0	108.57	57.95	80.43	39.99	17.52	41.91	48.60
44	ER13b	ExonRegion	0	104.15	40.42	84.23	29.71	18.31	34.51	31.88
45	E13_Db	KnownBoundary	0	29.09	7.86	24.43	10.21	1.01	10.21	7.07
46	ER13c	ExonRegion	0	83.71	47.04	76.62	29.53	18.98	36.96	31.37
47	IG26	Intergenic	0	67.20	38.22	75.42	37.91	29.91	48.02	34.96
48	IG26_SR1	SilentIntergenicRegion	0	78.54	20.05	50.47	19.13	11.98	23.65	16.14
49	IG26_AR1	ActiveIntergenicRegion	0	57.87	37.28	62.67	28.42	16.44	33.37	25.57
50	IG26_SR2	SilentIntergenicRegion	0	47.92	32.87	54.69	30.46	25.18	27.99	29.61
51	IG26_AR2	ActiveIntergenicRegion	0	64.56	35.82	63.41	24.65	20.33	34.10	28.11
52	IG26_SR3	SilentIntergenicRegion	0	126.93	62.24	132.40	53.27	33.43	79.03	45.60
53	IG26_AR3	ActiveIntergenicRegion	0	104.29	54.25	122.46	58.32	44.56	69.34	54.19
54	IG26_SR4	SilentIntergenicRegion	0	83.66	50.35	79.65	65.00	28.37	73.81	33.02
55	IG26_AR4	ActiveIntergenicRegion	0	67.43	48.35	84.36	56.14	51.02	74.51	48.88