Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FBXO25	Gene	0	90.03	97.16	59.74	41.87	34.90	59.86	78.13
2	352684	Transcript	0	0	0	0	0	0	0	0
3	350302	Transcript	0	0	0	0	0	0	0	0
4	276326	Transcript	0	7.12	8.64	1.26	3.49	0.63	6.75	0.52
5	382824	Transcript	0	7.68	7.90	4.40	5.61	2.83	6.74	7.42
6	ER1a	ExonRegion	0	4.83	9.25	1.41	4.48	1.31	6.58	2.72
7	E1a_E2b	KnownJunction	0	8.73	11.14	3.13	4.20	3.34	14.31	6.39
8	ER2a	ExonRegion	0	7.68	7.90	4.40	5.61	2.83	6.74	7.42
9	ER2b	ExonRegion	0	65.85	109.65	47.86	45.55	20.81	58.34	79.53
10	E2a_E3a	KnownJunction	0	98.75	167.40	78.10	92.33	30.48	103.42	133.84
11	ER3a	ExonRegion	0	151.09	228.18	105.92	89.04	55.77	144.07	149.86
12	E3a_E4a	KnownJunction	0	158.05	169.45	77.76	61.28	42.99	118.19	114.85
13	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	0	182.57	177.71	100.94	67.01	54.50	130.18	147.59
15	E4a_E5a	KnownJunction	0	145.04	116.83	65.79	29.88	54.93	77.26	118.75
16	ER5a	ExonRegion	0	215.94	177.24	121.73	73.44	61.98	137.76	170.23
17	E5a_E6a	KnownJunction	0	265.74	176.39	134.82	71.14	86.54	140.22	161.92
18	ER6a	ExonRegion	0	307.10	215.65	142.69	66.05	82.19	131.38	192.27
19	E6a_E7a	KnownJunction	0	285.87	232.11	128.96	71.06	90.57	129.20	157.75
20	I6_AR1	ActiveIntronRegion	0	0.00	0.00	6.00	3.74	35.88	1.23	0.00
21	E7_Aa	NovelBoundary	1	6.94	3.18	47.64	29.56	53.04	4.23	6.21
22	ER7a	ExonRegion	0	187.31	184.80	122.23	82.74	87.99	105.87	172.46
23	E7_Da	NovelBoundary	1	5.32	6.70	48.87	32.81	28.98	8.76	12.07
24	E7a_E8a	KnownJunction	0	113.29	172.29	66.12	53.21	75.91	93.61	160.64
25	I7	Intron	1	8.46	16.71	72.90	90.93	77.22	29.13	18.47
26	I7_AR1	ActiveIntronRegion	1	4.37	3.92	45.96	24.65	23.79	4.47	5.68
27	I7_SR1	SilentIntronRegion	1	5.10	6.17	46.79	29.31	36.86	11.75	8.68
28	I7_AR2	ActiveIntronRegion	1	11.75	23.12	104.10	136.88	120.18	44.64	25.77
29	I7_SR2	SilentIntronRegion	1	6.83	13.45	50.16	63.32	56.89	19.08	12.28
30	I7_AR4	ActiveIntronRegion	1	7.85	16.75	78.05	101.28	80.20	31.61	22.20
31	I7_SR3	SilentIntronRegion	1	7.98	12.47	91.99	76.05	86.97	22.98	18.99
32	I7_AR5	ActiveIntronRegion	1	11.95	24.77	90.63	141.20	99.91	42.10	26.56
33	I7_SR4	SilentIntronRegion	1	4.35	15.15	14.65	15.96	4.72	9.62	9.18
34	I7_AR6	ActiveIntronRegion	0	3.84	17.88	8.52	12.29	4.40	9.81	6.55
35	I7_SR5	SilentIntronRegion	1	2.99	9.03	9.24	22.01	3.65	9.32	5.39
36	E8_Aa	NovelBoundary	1	3.96	6.91	7.72	21.29	5.44	2.76	4.56
37	ER8a	ExonRegion	0	174.30	199.64	96.46	66.89	82.98	114.38	180.96
38	E8_Da	NovelBoundary	1	5.51	18.21	20.15	16.17	9.41	9.14	5.29
39	E8a_E9a	KnownJunction	0	186.36	213.43	87.75	59.52	68.14	104.12	177.54
40	I8	Intron	0	4.19	7.33	13.20	15.02	3.23	6.51	4.08
41	I8_SR1	SilentIntronRegion	1	4.35	8.97	11.79	17.70	3.39	7.77	4.20
42	I8_AR1	ActiveIntronRegion	1	4.59	5.32	18.73	12.43	3.30	5.16	4.63
43	E9_Aa	NovelBoundary	1	4.44	4.10	16.94	12.25	6.59	5.60	1.45
44	ER9a	ExonRegion	0	184.59	202.05	91.01	74.48	67.86	108.71	178.24
45	E9_Da	NovelBoundary	1	4.39	4.44	30.55	15.09	4.24	4.98	1.50
46	E9a_E10a	KnownJunction	0	12.32	13.48	2.74	4.50	1.18	12.97	0.89
47	E9a_E11a	KnownJunction	0	113.96	113.89	56.43	41.58	68.51	42.40	123.04
48	I9	Intron	0	9.82	9.55	19.16	16.20	7.06	10.12	4.69
49	I9_SR1	SilentIntronRegion	0	8.29	5.53	14.38	10.64	5.86	5.96	4.67
50	I9_AR1	ActiveIntronRegion	1	8.94	9.81	18.72	17.28	5.98	13.67	4.35
51	I9_SR2	SilentIntronRegion	1	10.12	11.09	19.59	19.12	7.71	11.35	4.54
52	I9_AR2	ActiveIntronRegion	1	8.25	15.62	18.28	20.04	7.64	11.20	3.48
53	I9_SR3	SilentIntronRegion	1	10.75	10.45	26.94	15.32	7.58	13.01	5.93
54	I9_AR3	ActiveIntronRegion	1	22.25	8.68	31.34	23.39	10.99	8.99	6.29
55	E10a_E11a	KnownJunction	0	3.24	3.21	0.00	1.57	0.00	0.00	0.00
56	ER10a	ExonRegion	0	5.81	9.22	1.03	4.39	0.72	7.27	0.67
57	I10	Intron	0	7.54	10.56	12.49	15.15	4.76	9.04	3.65
58	I10_AR1	ActiveIntronRegion	0	10.33	10.13	16.68	17.49	5.90	9.00	4.08
59	I10_SR1	SilentIntronRegion	0	5.55	11.49	9.68	13.86	3.99	9.57	3.50
60	ER11a	ExonRegion	0	54.58	94.18	40.89	40.03	22.06	56.46	62.93
61	E11_Da	KnownBoundary	1	29.34	22.02	40.80	19.21	6.04	6.08	11.08
62	ER11b	ExonRegion	1	28.57	21.51	37.30	20.64	13.52	16.87	11.76
63	IG5	Intergenic	0	12.15	15.80	23.11	31.45	44.79	16.27	13.55
64	IG5_SR1	SilentIntergenicRegion	0	13.32	15.35	19.93	21.80	14.13	15.22	9.41
65	IG5_AR1	ActiveIntergenicRegion	0	35.35	32.41	43.18	78.40	49.16	25.51	21.17
66	IG5_SR2	SilentIntergenicRegion	0	20.75	21.31	26.13	37.76	18.34	25.47	18.04
67	IG5_AR2	ActiveIntergenicRegion	0	28.05	35.80	25.75	64.37	27.38	22.14	19.90
68	IG5_AR3	ActiveIntergenicRegion	0	16.78	18.74	17.35	32.67	21.08	11.82	11.49
69	IG5_AR4	ActiveIntergenicRegion	0	4.61	5.47	15.26	4.93	7.36	7.77	3.60
70	IG5_SR4	SilentIntergenicRegion	0	3.96	6.90	11.92	12.94	10.14	7.66	4.72
71	IG5_AR6	ActiveIntergenicRegion	0	3.68	5.53	12.50	9.76	10.63	5.07	1.62
72	IG5_SR5	SilentIntergenicRegion	0	4.03	4.02	7.38	8.19	6.81	4.43	0.58
73	IG5_AR7	ActiveIntergenicRegion	0	3.59	7.27	13.51	10.99	8.29	9.08	4.01
74	IG5_AR8	ActiveIntergenicRegion	0	8.13	10.26	15.37	12.68	7.76	12.85	2.91
75	IG5_AR9	ActiveIntergenicRegion	0	5.56	13.87	21.98	16.25	7.23	10.32	4.93
76	IG5_SR6	SilentIntergenicRegion	0	9.31	16.12	19.07	17.10	10.68	12.31	6.05
77	IG5_AR10	ActiveIntergenicRegion	0	6.54	17.05	17.72	15.62	9.42	11.37	4.42
78	IG5_SR7	SilentIntergenicRegion	0	4.14	7.69	10.62	13.89	5.98	8.70	3.77
79	IG5_AR11	ActiveIntergenicRegion	0	4.28	8.14	10.56	17.05	6.73	9.15	4.46
80	IG5_SR8	SilentIntergenicRegion	0	5.89	6.97	12.88	27.39	10.33	15.47	4.86
81	IG5_AR12	ActiveIntergenicRegion	0	34.72	44.95	78.83	88.68	280.24	50.17	62.84