Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC004889.1	Gene	0	40.83	66.19	54.23	113.07	65.25	62.85	66.46
2	307048	Transcript	0	36.44	36.42	41.15	65.08	30.16	26.80	47.40
3	ER1a	ExonRegion	0	1.58	3.50	3.68	15.56	11.34	5.25	6.12
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	I1	Intron	0	2.25	1.44	4.23	3.87	17.11	1.45	2.31
6	I1_AR6	ActiveIntronRegion	1	10.35	10.99	18.82	40.76	113.47	41.10	21.54
7	I1_SR5	SilentIntronRegion	0	5.38	1.73	8.38	4.22	28.57	1.31	3.06
8	I1_AR8	ActiveIntronRegion	0	5.63	3.28	9.64	8.47	40.60	2.40	6.96
9	I1_SR7	SilentIntronRegion	0	2.58	2.85	3.96	5.29	30.60	1.60	3.29
10	I1_AR9	ActiveIntronRegion	0	3.22	4.59	3.73	11.39	25.10	2.38	4.86
11	I1_AR10	ActiveIntronRegion	0	2.56	2.18	2.61	6.42	25.99	2.37	2.21
12	I1_AR11	ActiveIntronRegion	0	2.31	2.33	2.58	1.25	39.29	1.23	1.35
13	I1_AR12	ActiveIntronRegion	0	1.64	0.05	0.97	0.11	21.62	0.53	1.35
14	I1_SR8	SilentIntronRegion	0	2.33	0.58	3.96	2.48	35.27	0.59	6.19
15	I1_AR14	ActiveIntronRegion	0	2.19	0.86	3.62	3.51	30.75	1.46	5.57
16	I1_SR9	SilentIntronRegion	0	0.71	2.54	2.69	2.91	17.98	0.29	1.48
17	I1_AR15	ActiveIntronRegion	0	2.91	2.32	5.45	5.63	32.35	0.10	2.62
18	I1_AR16	ActiveIntronRegion	0	3.96	0.75	11.15	7.29	71.58	1.23	6.07
19	I1_SR10	SilentIntronRegion	0	2.85	1.31	4.84	3.22	31.07	0.57	2.54
20	I1_AR17	ActiveIntronRegion	0	3.25	1.77	7.24	5.09	47.90	2.82	3.62
21	I1_SR11	SilentIntronRegion	0	2.31	1.34	3.82	3.33	27.53	1.36	2.86
22	I1_AR2	ActiveIntronRegion	0	35.95	9.68	20.97	21.17	12.86	4.12	23.66
23	I1_AR3	ActiveIntronRegion	0	0.00	0.00	2.39	1.44	13.10	2.37	1.57
24	I1_AR4	ActiveIntronRegion	1	2.36	3.64	6.30	8.97	35.78	23.99	4.27
25	Ix	Intron	0	34.58	39.27	49.80	48.37	10.23	4.17	18.77
26	Ix_AR1	ActiveIntronRegion	0	34.69	39.39	49.96	48.53	10.26	4.18	18.83
27	I1_AR2	ActiveIntronRegion	0	14.37	6.07	20.38	13.13	1.29	0.86	8.99
28	I1_AR11	ActiveIntronRegion	1	26.55	35.48	36.85	36.95	7.37	8.64	36.05
29	I1_SR10	SilentIntronRegion	1	38.59	27.09	29.31	17.22	10.33	5.80	19.35
30	I1_AR12	ActiveIntronRegion	1	144.05	82.70	103.83	122.74	18.45	23.10	79.08
31	I1_SR11	SilentIntronRegion	1	44.69	28.26	47.95	22.84	12.53	11.55	25.42
32	I1_AR13	ActiveIntronRegion	1	53.89	32.50	59.18	30.14	10.56	8.87	33.70
33	I1_SR12	SilentIntronRegion	1	80.87	43.56	96.95	45.76	25.45	12.70	36.35
34	I1_AR14	ActiveIntronRegion	1	61.09	25.94	84.47	25.31	27.09	8.09	33.86
35	I1_AR15	ActiveIntronRegion	0	23.01	7.91	30.22	10.65	17.02	2.33	14.33
36	E2_Aa	NovelBoundary	0	34.18	35.20	51.69	33.02	29.67	17.53	26.27
37	ER2a	ExonRegion	0	110.12	88.81	126.29	160.19	60.06	45.54	149.79
38	E2_Da	NovelBoundary	0	58.15	42.45	101.33	48.55	42.26	33.45	113.16
39	E2a_E3a	KnownJunction	1	38.44	20.70	29.52	34.38	6.99	10.43	23.66
40	I2_AR1	ActiveIntronRegion	0	13.85	7.21	20.18	7.24	6.15	3.77	17.82
41	ER3a	ExonRegion	0	32.08	69.07	46.24	115.26	72.44	72.79	57.44