Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC073517.6	Gene	0	18.88	36.57	31.82	59.50	28.48	54.76	32.44
2	397912	Transcript	0	10.20	18.07	20.53	33.50	13.95	30.73	19.37
3	ER1a	ExonRegion	0	8.69	26.13	16.65	35.22	9.63	30.38	15.58
4	E1a_E2a	KnownJunction	1	18.19	26.85	23.55	36.41	9.87	34.92	7.52
5	E1a_E3a	NovelJunction	0	0.00	4.89	8.03	12.35	3.23	12.17	6.25
6	E2_Aa	NovelBoundary	0	10.46	6.12	4.79	8.75	8.02	4.18	8.25
7	ER2a	ExonRegion	0	27.37	60.45	66.61	89.96	44.90	87.43	63.09
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER3a	ExonRegion	0	28.72	78.70	77.87	134.68	39.26	143.08	90.89
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER4a	ExonRegion	0	28.61	50.65	68.33	117.07	47.52	104.62	61.19
12	E4a_E5a	KnownJunction	1	7.78	12.98	29.69	64.15	18.60	45.93	16.21
13	E4a_E6a	NovelJunction	0	38.80	13.42	57.35	44.54	29.81	33.69	54.46
14	E4a_E7a	NovelJunction	0	18.73	15.18	19.41	8.51	8.07	21.92	14.68
15	I4	Intron	1	9.70	5.41	10.25	4.74	19.42	3.29	19.93
16	I4_AR1	ActiveIntronRegion	1	9.96	10.23	13.69	2.04	17.04	3.34	21.81
17	I4_AR2	ActiveIntronRegion	1	14.80	12.19	19.27	8.83	37.19	3.59	38.35
18	I4_SR2	SilentIntronRegion	1	7.86	4.42	6.94	2.85	11.28	2.11	12.30
19	I4_AR3	ActiveIntronRegion	1	17.28	5.71	15.41	6.07	28.85	3.98	18.18
20	I4_SR3	SilentIntronRegion	1	7.88	3.30	7.42	4.85	17.07	2.87	18.02
21	I4_AR5	ActiveIntronRegion	1	18.23	7.03	17.98	5.32	31.25	5.21	33.56
22	I4_SR4	SilentIntronRegion	1	6.63	3.34	6.48	6.85	21.02	3.40	18.38
23	I4_AR6	ActiveIntronRegion	1	6.60	3.62	5.39	5.07	14.58	2.27	14.88
24	I4_SR5	SilentIntronRegion	1	4.46	3.49	7.60	2.78	13.65	2.99	12.75
25	I4_AR8	ActiveIntronRegion	1	5.41	2.54	8.72	2.59	14.31	2.31	19.13
26	I4_AR11	ActiveIntronRegion	1	6.82	5.70	5.86	3.39	15.43	4.23	17.32
27	I4_SR7	SilentIntronRegion	1	9.42	3.56	9.37	6.53	17.77	4.16	19.37
28	E5_Aa	NovelBoundary	1	1.57	8.22	5.03	4.01	0.99	8.12	11.34
29	ER5a	ExonRegion	0	8.87	17.92	19.59	36.75	12.28	28.74	18.07
30	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	Ix	Intron	0	7.33	8.63	15.48	11.37	17.29	13.66	13.33
32	Ix_AR1	ActiveIntronRegion	0	8.02	9.44	16.94	12.44	18.80	14.94	14.59
33	ER6a	ExonRegion	0	15.73	16.65	24.50	25.11	11.29	19.55	27.99
34	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER7a	ExonRegion	1	17.98	5.94	22.14	21.68	22.24	18.09	24.29
36	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	Ix	Intron	1	3.65	1.88	3.16	1.27	3.69	0.73	7.62
38	Ix_SR1	SilentIntronRegion	0	3.82	1.81	3.22	1.18	3.92	0.78	7.65
39	Ix_AR1	ActiveIntronRegion	0	2.37	2.42	2.72	1.97	1.88	0.29	7.45
40	ER8a	ExonRegion	0	6.87	0.71	4.77	3.49	8.87	3.91	5.73
41	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER9a	ExonRegion	0	0.11	0.00	0.61	0.00	0.77	0.00	0.29
43	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	Ix	Intron	1	3.47	3.14	3.62	1.98	3.56	1.64	9.79
45	Ix_SR1	SilentIntronRegion	0	1.79	3.55	2.76	1.46	3.16	0.00	9.40
46	Ix_AR1	ActiveIntronRegion	0	3.68	3.66	1.58	1.85	2.02	1.89	9.14
47	Ix_SR2	SilentIntronRegion	0	3.78	3.34	3.85	2.18	4.07	1.45	8.97
48	Ix_AR2	ActiveIntronRegion	0	3.70	2.27	3.39	2.86	4.40	3.42	14.19
49	Ix_SR3	SilentIntronRegion	0	4.31	3.69	4.79	2.22	4.20	1.61	11.54
50	Ix_AR4	ActiveIntronRegion	0	1.85	1.70	1.23	1.23	1.98	2.18	8.08
51	ER10a	ExonRegion	0	24.96	46.30	35.70	72.04	39.81	67.31	37.23