Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	OPN1SW	Gene	0	8.42	16.29	14.85	38.14	18.33	47.20	9.53
2	249389	Transcript	0	6.19	10.68	10.63	26.73	13.35	31.42	6.26
3	IG29	Intergenic	0	0.48	3.54	0.76	4.02	0.15	11.06	1.02
4	IG29_SR1	SilentIntergenicRegion	0	0.56	4.15	0.89	4.63	0.13	12.81	1.20
5	ER1a	ExonRegion	1	0.27	7.96	1.57	7.91	0.23	22.00	4.85
6	E1_Da	NovelBoundary	0	1.03	7.72	0.53	9.56	0.00	21.15	5.00
7	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	I1	Intron	1	0.74	3.25	1.63	4.00	0.29	17.98	3.41
9	I1_SR1	SilentIntronRegion	1	0.75	3.27	1.64	4.03	0.29	18.11	3.44
10	E2_Aa	NovelBoundary	0	3.59	7.20	0.89	8.07	0.00	14.95	1.18
11	ER2a	ExonRegion	0	1.44	3.82	1.22	4.46	0.24	8.19	2.65
12	E2_Da	NovelBoundary	0	1.87	11.59	0.00	10.32	0.00	16.29	2.49
13	E2a_E3a	KnownJunction	0	0.70	0.00	0.00	0.00	0.00	0.00	0.00
14	I2	Intron	1	1.09	4.87	0.64	5.85	0.63	22.55	6.20
15	I2_SR1	SilentIntronRegion	1	1.10	4.90	0.64	5.88	0.64	22.67	6.24
16	E3_Aa	NovelBoundary	1	2.84	4.36	3.19	1.49	0.00	18.60	6.32
17	ER3a	ExonRegion	1	0.52	0.56	1.14	5.02	1.00	10.07	2.78
18	E3_Da	NovelBoundary	0	1.24	3.36	0.86	5.39	2.17	13.53	2.88
19	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	I3	Intron	0	1.12	3.76	0.35	2.58	0.84	10.13	2.61
21	I3_SR1	SilentIntronRegion	0	1.12	3.78	0.35	2.60	0.85	10.20	2.63
22	ER4a	ExonRegion	0	0.39	4.85	0.96	4.01	0.88	7.12	2.14
23	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	I4	Intron	0	29.34	46.46	64.94	167.70	68.11	215.61	28.74
25	I4_AR1	ActiveIntronRegion	0	40.78	63.89	90.62	233.94	95.06	298.20	39.37
26	E5_Aa	NovelBoundary	0	62.09	132.51	116.72	407.72	102.17	396.61	69.44
27	ER5a	ExonRegion	0	52.40	78.90	90.81	219.23	117.82	235.37	43.91
28	IG28	Intergenic	0	51.04	74.36	103.68	202.07	84.84	253.74	53.29
29	IG28_AR1	ActiveIntergenicRegion	0	51.13	74.50	103.88	202.45	85.00	254.24	53.39