Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PILRA	Gene	0	20.21	31.69	31.83	56.32	8.53	9.82	4.68
2	394000	Transcript	0	0.00	0.00	0.00	1.44	0.00	0.00	0.00
3	198536	Transcript	0	17.14	34.35	39.34	66.23	4.12	12.74	2.17
4	350573	Transcript	0	2.80	0.00	2.85	4.33	1.04	1.45	0.00
5	IG29	Intergenic	0	9.80	7.65	6.16	7.78	2.78	1.58	2.44
6	IG29_SR1	SilentIntergenicRegion	0	9.81	7.65	6.16	7.78	2.78	1.58	2.44
7	ER1a	ExonRegion	0	15.72	14.75	21.64	20.86	7.10	4.51	4.62
8	E1a_E2a	KnownJunction	0	17.62	27.69	27.82	61.90	6.55	12.84	2.26
9	ER2a	ExonRegion	0	33.67	46.11	46.24	71.35	18.05	14.80	9.69
10	E2_Da	NovelBoundary	0	28.47	40.41	22.50	42.48	9.29	8.23	12.83
11	E2a_E3a	KnownJunction	1	9.78	33.21	33.07	45.59	5.37	10.64	1.18
12	E2a_E4a	KnownJunction	0	2.80	0.00	2.85	4.33	1.04	1.45	0.00
13	E2a_E5a	KnownJunction	0	0.00	0.00	0.00	1.44	0.00	0.00	0.00
14	I2_AR1	ActiveIntronRegion	0	17.69	21.60	11.66	24.49	9.92	5.60	4.78
15	I2_SR1	SilentIntronRegion	0	5.94	12.35	4.11	9.15	3.40	1.27	3.43
16	I2_AR2	ActiveIntronRegion	0	10.15	10.64	9.01	9.97	8.09	3.63	1.61
17	ER3a	ExonRegion	0	14.98	36.00	33.63	72.20	3.60	13.31	1.80
18	E3a_E4a	KnownJunction	0	26.65	33.84	51.32	80.89	3.39	14.26	3.54
19	E4_Aa	NovelBoundary	0	13.80	16.55	7.66	15.82	10.97	7.08	3.78
20	ER4a	ExonRegion	0	23.10	41.77	54.77	94.48	7.24	19.18	2.96
21	E4_Da	NovelBoundary	0	12.65	10.51	4.12	12.62	3.16	5.76	2.91
22	E4a_E5a	KnownJunction	1	9.28	27.64	34.04	66.26	9.54	14.12	0.00
23	I4	Intron	0	9.08	8.69	3.96	14.43	0.08	3.36	0.47
24	I4_SR1	SilentIntronRegion	0	9.10	8.70	3.97	14.45	0.08	3.36	0.47
25	E5_Aa	NovelBoundary	1	9.95	3.26	3.91	19.97	0.00	12.19	0.00
26	ER5a	ExonRegion	0	20.90	37.42	45.75	92.08	4.47	15.47	2.64
27	E5a_E6a	KnownJunction	0	32.80	42.77	48.43	92.22	1.87	11.74	4.07
28	ER6a	ExonRegion	0	28.50	42.33	41.53	81.87	2.91	10.54	4.05
29	I6_AR2	ActiveIntronRegion	1	0.00	3.64	0.00	15.74	0.00	0.00	0.00
30	ER7a	ExonRegion	0	9.58	22.37	15.60	45.07	2.64	3.76	1.01