Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RABGEF1	Gene	0	178.35	369.87	157.31	417.75	90.06	554.60	295.94
2	284957	Transcript	0	0	0	0	0	0	0	0
3	380828	Transcript	0	329.99	184.95	222.89	175.84	77.34	155.87	157.28
4	380827	Transcript	0	11.48	16.50	4.57	14.11	3.71	15.46	5.68
5	IG5	Intergenic	0	4.11	14.30	4.07	15.53	3.06	25.34	16.07
6	IG5_SR3	SilentIntergenicRegion	0	3.23	14.24	3.84	15.65	2.23	25.84	18.58
7	IG5_AR3	ActiveIntergenicRegion	0	2.02	7.44	2.06	8.74	1.17	7.73	5.89
8	IG5_AR4	ActiveIntergenicRegion	0	3.45	9.65	1.74	13.41	1.64	21.60	15.88
9	IG5_AR5	ActiveIntergenicRegion	0	2.95	12.15	3.03	12.37	1.96	26.73	20.09
10	IG5_SR4	SilentIntergenicRegion	0	2.88	11.37	2.62	10.42	1.70	16.81	12.70
11	IG5_AR6	ActiveIntergenicRegion	0	5.76	16.58	6.58	19.12	2.81	32.18	20.88
12	IG5_SR5	SilentIntergenicRegion	0	3.55	5.93	2.62	6.57	2.04	9.71	8.98
13	IG5_AR8	ActiveIntergenicRegion	0	16.79	52.82	13.66	60.33	19.77	103.58	31.03
14	ER1a	ExonRegion	0	32.01	106.59	27.88	118.94	23.56	124.69	52.77
15	E1a_E2a	KnownJunction	0	102.21	423.42	85.91	463.72	25.91	456.53	212.31
16	E1a_E5a	NovelJunction	0	13.00	25.59	10.68	51.20	5.35	37.14	11.72
17	I1	Intron	0	43.22	40.27	30.31	35.47	6.73	38.95	28.55
18	I1_SR2	SilentIntronRegion	0	87.39	148.59	63.25	130.04	27.62	152.10	34.56
19	I1_AR3	ActiveIntronRegion	0	124.94	119.55	121.88	93.86	43.43	153.19	66.84
20	I1_AR4	ActiveIntronRegion	0	72.66	120.46	72.60	89.00	29.22	112.14	62.31
21	I1_AR7	ActiveIntronRegion	0	45.65	42.50	31.41	61.92	11.11	76.27	27.35
22	I1_AR8	ActiveIntronRegion	0	59.83	44.90	39.98	51.86	7.25	57.17	33.78
23	I1_SR6	SilentIntronRegion	0	52.49	36.83	39.32	38.42	6.38	35.12	36.95
24	I1_AR10	ActiveIntronRegion	0	59.89	44.62	44.26	48.54	7.57	49.44	38.47
25	I1_SR8	SilentIntronRegion	0	39.09	30.98	28.26	29.77	4.47	30.64	29.15
26	I1_AR11	ActiveIntronRegion	0	36.42	51.16	24.48	47.18	8.16	39.87	44.34
27	I1_SR10	SilentIntronRegion	0	41.52	31.22	26.64	22.04	4.16	24.23	25.60
28	I1_SR11	SilentIntronRegion	0	45.06	31.39	24.56	21.99	3.88	18.12	26.38
29	I1_SR12	SilentIntronRegion	0	45.40	35.11	26.74	26.65	4.85	24.59	29.19
30	E2_Aa	NovelBoundary	0	48.52	43.22	24.98	46.24	9.87	33.96	34.17
31	ER2a	ExonRegion	0	169.53	571.61	143.67	570.04	70.71	761.78	250.56
32	E2a_E3a	KnownJunction	0	0.78	1.31	0.00	4.63	0.00	1.55	1.61
33	E2a_E5a	KnownJunction	0	245.89	711.88	223.07	802.09	95.37	1051.92	363.99
34	E3_Aa	NovelBoundary	0	348.57	430.35	298.74	251.87	81.72	300.53	149.32
35	ER3a	ExonRegion	0	6.30	8.62	2.27	2.47	5.24	7.79	4.64
36	E3_Da	NovelBoundary	0	298.80	230.74	227.30	150.65	203.90	157.53	172.77
37	E3a_E4a	KnownJunction	1	1641.66	914.82	1111.63	871.14	372.95	769.98	780.15
38	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER4a	ExonRegion	0	1.20	0.00	0.53	0.97	8.50	0.00	0.00
40	ER5a	ExonRegion	0	354.24	837.28	312.01	934.50	143.19	1221.96	386.53
41	E5a_E6a	KnownJunction	0	335.75	689.23	264.56	776.84	98.76	1077.94	337.25
42	E5a_E7a	NovelJunction	0	19.94	64.21	13.11	45.05	4.15	62.87	26.89
43	E5a_E8a	KnownJunction	0	11.48	16.50	4.57	14.11	3.71	15.46	5.68
44	E5a_E10a	NovelJunction	0	17.72	60.40	26.47	91.03	0.00	74.82	20.01
45	ER6a	ExonRegion	0	477.65	804.06	363.32	832.37	165.04	1114.01	432.17
46	E6a_E7a	KnownJunction	0	509.01	886.40	392.57	887.29	182.39	1107.42	427.52
47	E6a_E8a	NovelJunction	0	16.72	6.65	9.93	7.67	8.60	13.43	8.05
48	ER7a	ExonRegion	0	492.05	927.08	374.38	930.01	145.66	1215.62	491.51
49	E7a_E8a	KnownJunction	0	482.57	847.52	350.56	857.32	120.52	1209.93	433.53
50	ER8a	ExonRegion	0	410.95	767.27	341.39	833.83	194.95	1078.59	563.23
51	E8_Da	NovelBoundary	1	48.75	26.72	35.35	17.91	1.15	18.41	15.52
52	E8a_E9a	KnownJunction	0	278.30	723.07	282.46	799.05	256.51	1010.91	690.19
53	ER9a	ExonRegion	0	295.46	841.21	293.85	923.28	145.91	1217.67	785.07
54	E9a_E10a	KnownJunction	0	203.27	853.16	169.94	861.79	98.32	1065.02	519.39
55	ER10a	ExonRegion	0	291.80	799.07	255.09	908.88	205.04	1017.86	612.70
56	E10_Da	NovelBoundary	0	98.02	289.30	119.98	321.54	177.81	371.53	141.80
57	E10a_E11a	KnownJunction	0	124.69	298.05	100.16	356.33	78.86	505.82	314.57
58	I10	Intron	0	45.92	77.39	31.90	73.78	25.11	70.37	30.02
59	I10_SR1	SilentIntronRegion	0	67.08	98.81	50.70	102.27	49.23	98.75	46.74
60	I10_AR2	ActiveIntronRegion	0	42.16	101.55	23.77	100.36	3.12	96.91	18.11
61	E11_Aa	NovelBoundary	0	48.17	135.48	30.70	148.11	5.16	130.94	23.62
62	ER11a	ExonRegion	0	126.52	228.95	118.00	276.08	70.03	389.57	242.08