Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	STX1A	Gene	0	28.33	142.83	23.37	81.08	17.75	34.91	62.97
2	395156	Transcript	0	2.15	1.82	0.38	2.20	1.94	0.00	1.62
3	222812	Transcript	0	0.98	1.63	0.88	0.00	0.00	0.00	0.53
4	395154	Transcript	0	3.80	3.05	0.90	3.22	0.89	2.96	2.07
5	395155	Transcript	0	29.04	186.90	35.37	111.70	20.08	63.78	76.39
6	ER1a	ExonRegion	0	3.07	4.25	1.02	5.61	5.67	0.00	3.37
7	ER1b	ExonRegion	0	5.38	9.72	1.35	11.22	8.91	0.00	4.72
8	ER1c	ExonRegion	1	11.82	36.87	9.54	18.99	15.17	2.78	14.97
9	E1a_E2a	KnownJunction	0	31.99	154.40	33.31	88.37	40.32	21.31	63.36
10	ER1d	ExonRegion	0	23.93	104.02	25.62	60.07	36.89	15.64	44.80
11	ER2a	ExonRegion	0	17.20	92.31	14.23	50.74	10.98	18.17	45.01
12	E2a_E3a	KnownJunction	0	4.71	59.98	5.65	20.86	4.24	13.27	21.31
13	I2	Intron	0	4.03	4.41	1.87	8.48	0.23	8.64	1.72
14	I2_SR1	SilentIntronRegion	0	4.08	4.45	1.89	8.57	0.24	8.75	1.75
15	E3_Aa	NovelBoundary	0	3.99	4.81	5.68	7.59	0.00	13.59	1.68
16	ER3a	ExonRegion	0	22.14	157.15	21.82	83.02	9.91	34.44	59.07
17	E3a_E4a	KnownJunction	0	36.10	164.75	40.32	70.57	11.60	25.78	71.83
18	I3_AR1	ActiveIntronRegion	0	5.23	9.77	2.60	7.22	1.11	11.66	7.24
19	I3_AR2	ActiveIntronRegion	0	5.61	9.25	3.64	5.23	1.24	11.79	6.95
20	E4_Aa	NovelBoundary	0	1.95	10.61	0.00	2.44	2.26	12.41	6.36
21	ER4a	ExonRegion	0	25.48	175.70	29.78	89.95	35.76	41.06	78.02
22	E4a_E5a	KnownJunction	0	22.66	181.35	30.34	84.14	24.60	48.83	62.86
23	I4	Intron	0	6.37	9.21	2.79	9.18	1.56	8.18	7.13
24	I4_AR1	ActiveIntronRegion	0	6.38	9.24	2.80	9.21	1.56	8.20	7.15
25	ER5a	ExonRegion	0	27.47	180.77	32.37	77.50	17.62	49.72	63.69
26	E5a_E6a	KnownJunction	0	22.58	182.69	21.40	64.83	12.93	34.22	61.54
27	E6_Aa	NovelBoundary	1	11.05	21.28	4.12	14.11	0.99	9.27	21.84
28	ER6a	ExonRegion	0	25.65	200.54	21.66	98.51	14.09	37.51	60.40
29	E6a_E7a	KnownJunction	0	29.79	188.23	24.77	76.34	18.81	39.05	59.78
30	ER7a	ExonRegion	0	36.19	187.70	37.79	84.36	24.56	45.28	65.23
31	E7a_E8a	KnownJunction	0	34.87	183.24	33.54	90.29	14.94	55.72	62.13
32	I7	Intron	0	5.00	5.01	2.97	10.08	1.20	8.10	3.23
33	I7_AR1	ActiveIntronRegion	0	6.32	5.63	3.80	9.00	1.59	8.83	3.07
34	ER8a	ExonRegion	0	35.15	190.57	24.47	96.52	17.45	53.55	68.31
35	E8_Da	KnownBoundary	1	24.87	10.61	5.48	9.64	2.93	4.45	3.65
36	E8a_E9a	KnownJunction	0	29.04	186.90	35.37	111.70	20.08	63.78	76.39
37	E8a_E9b	KnownJunction	0	0.98	1.63	0.88	0.00	0.00	0.00	0.53
38	E8a_E9c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER8b	ExonRegion	1	11.41	6.73	2.69	8.40	1.87	8.88	6.21
40	E8_Db	NovelBoundary	1	14.29	13.19	3.15	11.84	6.25	5.79	8.99
41	E8b_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	I8	Intron	1	10.51	10.79	2.62	8.05	2.73	7.17	7.48
43	I8_SR1	SilentIntronRegion	0	11.87	7.56	3.94	8.18	2.48	8.43	5.51
44	I8_AR2	ActiveIntronRegion	1	11.12	15.03	2.21	10.03	3.30	8.20	9.80
45	E9_Aa	NovelBoundary	1	12.28	12.79	1.61	5.09	7.31	9.25	7.70
46	ER9a	ExonRegion	0	32.84	127.49	29.02	74.22	16.06	39.79	60.46
47	E9_Ab	KnownBoundary	0	30.56	53.49	17.52	38.06	7.70	18.38	32.56
48	E9_Da	KnownBoundary	0	9.93	50.05	9.92	33.86	18.49	21.41	29.77
49	ER9b	ExonRegion	0	34.22	131.77	31.89	72.80	18.94	37.16	64.29
50	ER9c	ExonRegion	0	33.90	154.18	38.82	92.12	24.64	39.23	77.25
51	E9_Ac	KnownBoundary	0	25.22	140.63	41.66	95.23	21.74	32.40	67.56
52	ER9d	ExonRegion	0	30.52	138.04	35.99	90.19	16.41	38.16	87.76
53	E9b_E10a	KnownJunction	0	21.75	124.13	24.19	57.84	12.15	42.61	70.94
54	ER9e	ExonRegion	0	0.00	2.43	0.00	1.25	0.81	0.00	0.00
55	ER10a	ExonRegion	0	30.25	145.43	23.08	87.81	18.84	34.94	68.46
56	ER10b	ExonRegion	0	3.38	1.21	0.14	1.00	0.16	0.00	1.48