Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C7orf44	Gene	0	31.16	29.91	45.54	43.49	161.33	20.29	52.58
2	395880	Transcript	1	8.40	7.49	11.63	2.22	86.98	2.30	30.65
3	310564	Transcript	0	9.78	13.72	24.96	14.97	7.51	7.55	17.25
4	223336	Transcript	0	50.87	51.70	85.33	95.33	478.42	35.70	53.46
5	395879	Transcript	1	16.83	12.47	23.59	26.19	8.52	11.18	8.80
6	ER1a	ExonRegion	0	2.50	1.82	6.94	0.00	166.63	0.00	2.70
7	ER1b	ExonRegion	0	4.76	3.89	9.89	0.25	249.43	1.23	7.29
8	ER1c	ExonRegion	0	46.30	41.59	78.79	59.49	967.95	22.49	73.25
9	E1a_E2a	KnownJunction	0	29.32	23.70	37.43	19.23	50.99	9.67	67.17
10	E1a_E3b	KnownJunction	0	50.87	51.70	85.33	95.33	478.42	35.70	53.46
11	I1	Intron	0	3.68	4.80	7.36	9.03	3.11	5.22	2.29
12	I1_AR2	ActiveIntronRegion	0	6.75	5.34	12.78	9.01	7.54	6.88	4.68
13	I1_SR7	SilentIntronRegion	0	2.51	5.61	6.53	9.98	2.51	5.00	1.74
14	I1_AR11	ActiveIntronRegion	0	5.08	8.28	6.08	11.69	4.99	6.76	2.14
15	I1_AR12	ActiveIntronRegion	0	6.92	11.82	16.05	14.70	5.00	9.37	3.30
16	I1_SR9	SilentIntronRegion	0	6.93	7.61	12.67	15.88	4.08	10.30	3.74
17	I1_AR13	ActiveIntronRegion	0	8.03	6.61	17.91	17.46	4.23	6.13	2.85
18	I1_AR14	ActiveIntronRegion	0	11.61	9.28	14.97	13.87	3.49	9.30	2.22
19	I1_SR11	SilentIntronRegion	0	9.22	7.08	13.44	16.24	3.36	10.85	3.21
20	I1_SR12	SilentIntronRegion	0	8.41	8.15	13.87	17.32	2.45	10.33	3.04
21	I1_SR13	SilentIntronRegion	0	6.51	7.71	11.70	16.43	3.58	11.63	3.05
22	I1_SR14	SilentIntronRegion	0	6.73	7.33	6.81	19.71	3.88	6.77	3.89
23	E2_Aa	NovelBoundary	1	14.00	8.85	23.73	18.26	2.33	13.72	4.86
24	ER2a	ExonRegion	0	23.54	29.69	34.01	27.16	18.87	15.84	69.26
25	E2_Da	KnownBoundary	1	6.51	37.70	24.57	23.03	4.38	20.45	15.59
26	E2a_E3b	KnownJunction	1	14.30	13.16	16.31	4.44	7.33	4.61	58.60
27	ER2b	ExonRegion	0	12.62	22.93	32.73	27.14	9.44	12.38	19.34
28	E2_Db	NovelBoundary	1	10.61	15.63	32.82	24.73	13.58	16.78	11.19
29	E2b_E3b	KnownJunction	0	6.94	4.52	17.20	2.79	5.58	2.71	15.15
30	E3_Aa	NovelBoundary	1	20.01	15.00	32.86	24.65	13.83	24.41	9.65
31	ER3a	ExonRegion	1	16.83	12.47	23.59	26.19	8.52	11.18	8.80
32	E3_Ab	KnownBoundary	1	15.59	11.80	23.81	15.44	3.07	12.86	5.47
33	ER3b	ExonRegion	0	65.69	63.41	99.20	87.46	222.38	42.63	139.85
34	E3_Da	NovelBoundary	1	5.39	7.30	15.22	13.90	1.18	4.61	9.14
35	E3a_E4a	KnownJunction	0	55.16	56.46	66.30	70.44	221.38	26.72	124.28
36	I3	Intron	0	4.41	13.85	11.25	21.56	3.33	12.73	7.84
37	I3_AR1	ActiveIntronRegion	0	4.42	13.88	11.27	21.61	3.33	12.75	7.85
38	E4_Aa	NovelBoundary	0	4.09	10.32	11.24	19.26	0.00	8.07	5.29
39	ER4a	ExonRegion	0	68.00	66.55	96.87	88.28	461.80	46.40	155.84
40	E4_Da	NovelBoundary	1	3.59	17.86	13.41	19.91	5.09	12.19	8.68
41	E4a_E5a	KnownJunction	0	100.21	56.80	158.19	81.30	753.48	56.98	169.13
42	I4	Intron	0	8.62	13.83	16.59	20.70	9.94	10.64	7.68
43	I4_AR1	ActiveIntronRegion	0	8.63	13.84	16.60	20.72	9.95	10.65	7.68
44	E5_Aa	NovelBoundary	0	16.41	18.47	18.81	16.44	18.12	8.79	8.91
45	ER5a	ExonRegion	0	80.62	84.77	114.69	110.57	771.16	52.10	175.42
46	E5_Da	NovelBoundary	0	13.37	17.60	11.38	13.76	0.97	5.33	4.11
47	E5a_E6a	KnownJunction	0	122.27	85.96	143.44	89.92	536.58	52.88	213.71
48	I5	Intron	1	8.87	11.25	17.21	20.58	3.21	8.59	16.51
49	I5_SR1	SilentIntronRegion	0	11.22	9.94	16.94	19.55	3.19	6.02	13.12
50	I5_AR1	ActiveIntronRegion	1	7.55	16.95	19.23	32.33	3.38	14.87	29.31
51	I5_AR2	ActiveIntronRegion	1	8.88	21.94	27.18	20.54	3.81	8.32	27.83
52	I5_SR2	SilentIntronRegion	1	6.50	11.95	15.84	12.20	2.84	5.95	14.46
53	I5_AR3	ActiveIntronRegion	0	4.36	5.36	10.23	11.05	1.43	3.80	5.33
54	I5_SR3	SilentIntronRegion	1	7.47	4.83	19.09	5.44	1.84	9.39	11.32
55	I5_AR4	ActiveIntronRegion	0	17.39	9.45	24.46	24.41	6.78	10.38	13.63
56	E6_Aa	NovelBoundary	0	22.23	11.85	38.20	34.30	6.57	8.09	16.42
57	ER6a	ExonRegion	0	83.93	75.97	115.42	108.05	514.78	49.93	186.57
58	E6_Da	NovelBoundary	0	6.76	14.76	11.50	23.54	5.49	5.63	17.04
59	E6a_E7a	KnownJunction	0	66.84	84.25	88.54	96.80	427.77	49.39	134.08
60	I6	Intron	1	6.30	8.38	18.01	23.46	0.97	7.20	16.89
61	I6_AR1	ActiveIntronRegion	1	6.31	8.40	18.05	23.50	0.97	7.22	16.93
62	E7_Aa	NovelBoundary	0	7.56	4.91	17.86	6.75	2.07	0.00	12.40
63	ER7a	ExonRegion	0	53.06	58.86	78.67	67.48	370.02	33.97	124.71
64	ER7b	ExonRegion	0	1.92	2.43	5.42	1.25	43.73	2.45	3.71
65	ER7c	ExonRegion	0	0.77	1.21	4.74	1.25	30.77	2.45	2.70
66	IG21	Intergenic	0	18.05	11.21	36.86	22.29	17.29	7.77	21.85
67	IG21_AR9	ActiveIntergenicRegion	0	12.53	9.23	26.60	14.42	12.70	7.59	14.81
68	IG21_AR8	ActiveIntergenicRegion	0	10.45	5.57	19.56	8.72	11.38	2.96	12.31
69	IG21_SR5	SilentIntergenicRegion	0	31.52	12.98	50.76	29.16	20.37	9.84	18.46
70	IG21_AR7	ActiveIntergenicRegion	0	18.78	13.95	37.26	31.69	22.14	14.34	29.66
71	IG21_SR4	SilentIntergenicRegion	0	15.43	12.49	31.16	25.79	13.33	7.88	23.32
72	IG21_SR2	SilentIntergenicRegion	0	6.88	10.46	15.96	6.94	6.76	0.59	8.74
73	IG21_AR2	ActiveIntergenicRegion	0	23.29	11.23	50.12	20.14	23.18	6.95	22.76
74	IG21_SR1	SilentIntergenicRegion	0	18.39	4.04	45.17	15.24	31.84	5.08	22.11
75	IG21_AR1	ActiveIntergenicRegion	0	19.57	10.13	50.84	15.00	21.73	5.29	25.48