Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	WIPI2	Gene	0	86.90	84.89	89.12	48.79	138.81	75.59	102.05
2	382384	Transcript	0	0	0	0	0	0	0	0
3	288828	Transcript	0	0	0	0	0	0	0	0
4	404704	Transcript	0	0	0	0	0	0	0	0
5	401525	Transcript	0	0	0	0	0	0	0	0
6	315176	Transcript	0	2.89	3.70	3.59	1.28	2.06	2.20	2.69
7	ER1a	ExonRegion	0	0.00	0.76	0.00	0.29	0.00	0.09	0.58
8	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.80
9	E1_Ac	KnownBoundary	0	1.59	13.24	0.00	1.68	2.14	1.61	12.35
10	ER1b	ExonRegion	0	0.00	6.39	0.00	1.39	0.81	1.54	2.65
11	ER1c	ExonRegion	0	13.29	37.84	11.83	17.15	17.85	26.51	19.18
12	E1a_E2a	KnownJunction	1	11.13	14.58	24.95	20.26	51.66	21.60	9.03
13	E1a_E3a	KnownJunction	0	66.58	84.33	47.61	34.68	69.53	64.51	88.17
14	E1a_E5b	NovelJunction	0	1.84	15.24	3.62	4.69	3.14	5.57	7.75
15	ER2a	ExonRegion	1	16.19	23.33	39.54	21.73	76.80	28.15	16.08
16	E2a_E3a	KnownJunction	1	23.75	27.72	48.30	18.50	78.73	27.12	22.60
17	ER3a	ExonRegion	0	114.42	152.52	147.33	85.68	209.56	131.14	183.40
18	E3a_E5b	KnownJunction	0	139.83	203.26	191.74	117.79	219.39	180.34	224.67
19	ER4a	ExonRegion	0	0.79	1.86	1.40	1.29	0.56	2.54	0.70
20	E4a_E5a	KnownJunction	0	2.79	3.13	3.49	0.00	0.00	0.00	0.87
21	ER5a	ExonRegion	0	5.08	6.10	5.87	2.55	5.62	4.07	6.49
22	E5_Ab	KnownBoundary	0	4.81	4.23	4.56	1.49	3.11	5.44	2.45
23	ER5b	ExonRegion	0	184.78	278.43	240.73	146.23	300.55	244.33	333.65
24	E5a_E6a	KnownJunction	0	224.41	301.57	272.48	160.49	426.80	285.42	387.35
25	ER6a	ExonRegion	0	213.54	258.74	248.23	151.56	387.46	234.87	339.54
26	E6a_E7a	KnownJunction	0	216.72	223.20	230.39	142.77	407.67	217.77	329.69
27	E7_Aa	NovelBoundary	1	86.55	2.60	96.42	1.19	0.00	1.53	1.26
28	ER7a	ExonRegion	0	298.20	253.11	263.25	123.12	452.10	204.39	297.27
29	E7a_E8a	KnownJunction	0	425.94	263.58	318.75	133.23	625.38	217.75	326.13
30	ER8a	ExonRegion	0	397.35	282.32	354.00	159.84	494.24	242.68	378.62
31	E8a_E9a	KnownJunction	0	451.08	323.19	370.97	160.43	334.15	270.25	366.05
32	ER9a	ExonRegion	0	423.03	298.99	329.60	141.19	399.50	224.24	318.55
33	E9_Da	NovelBoundary	1	38.99	29.11	29.88	10.97	6.48	18.09	11.65
34	E9a_E10a	KnownJunction	0	330.24	243.77	280.52	118.47	433.62	174.71	313.82
35	I9	Intron	0	17.70	16.66	17.34	12.34	5.66	16.80	9.18
36	I9_AR1	ActiveIntronRegion	0	21.31	13.39	21.17	12.79	6.92	14.30	8.24
37	I9_SR1	SilentIntronRegion	0	20.92	19.01	21.48	14.51	5.07	13.64	11.56
38	I9_AR2	ActiveIntronRegion	0	23.17	27.10	22.43	19.42	7.44	26.41	13.94
39	I9_SR2	SilentIntronRegion	0	20.93	16.54	18.86	18.91	2.22	16.21	8.11
40	ER10a	ExonRegion	0	260.40	240.29	269.53	129.73	388.71	199.35	307.16
41	E10a_E11a	KnownJunction	0	234.98	183.72	231.02	90.89	294.94	177.15	200.07
42	ER11a	ExonRegion	0	130.87	141.03	132.04	89.06	220.21	120.79	168.52
43	E11a_E12a	KnownJunction	0	141.28	144.47	132.81	87.64	200.58	124.11	177.18
44	ER12a	ExonRegion	0	123.58	150.82	131.46	91.11	226.57	110.43	221.60
45	E12a_E13a	KnownJunction	0	142.63	168.95	135.20	105.79	260.77	102.59	263.44
46	ER13a	ExonRegion	0	144.53	190.35	126.46	115.69	235.53	135.35	241.24
47	E13_Da	KnownBoundary	0	99.57	102.54	91.05	65.99	204.71	100.47	149.73
48	E13a_E14a	KnownJunction	0	49.99	78.47	47.71	46.19	76.72	48.75	68.73
49	ER13b	ExonRegion	0	95.61	100.21	81.82	69.07	175.89	86.15	137.23
50	E13b_E14a	KnownJunction	0	88.27	97.44	72.23	64.21	127.11	66.36	122.89
51	ER14a	ExonRegion	0	115.57	159.39	121.03	89.00	199.98	117.92	200.44
52	E14_Da	KnownBoundary	1	106.31	139.53	127.35	89.37	218.79	115.69	187.87
53	ER14b	ExonRegion	0	158.28	117.19	154.89	67.57	247.84	114.32	141.45
54	E14_Db	KnownBoundary	0	257.16	143.84	255.65	87.15	436.78	187.33	187.47
55	ER14c	ExonRegion	0	207.23	116.19	188.93	81.38	228.14	129.30	149.47
56	E14_Dc	KnownBoundary	0	73.92	61.92	94.08	49.87	192.08	81.52	74.68
57	ER14d	ExonRegion	0	21.35	26.66	27.50	15.52	58.85	26.99	28.54