Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SYNJ2	Gene	0	119.54	87.87	61.89	153.40	21.61	132.85	34.46
2	367121	Transcript	0	5.77	2.63	1.04	5.51	6.12	5.54	1.66
3	367122	Transcript	1	1.55	0.00	2.23	19.37	0.00	0.00	0.00
4	355585	Transcript	0	0	0	0	0	0	0	0
5	367113	Transcript	0	1.07	0.00	0.00	0.02	0.00	0.00	0.00
6	367112	Transcript	0	18.95	7.86	10.93	10.18	10.14	6.32	4.22
7	ER1a	ExonRegion	0	18.59	57.71	7.16	82.06	2.25	52.09	4.60
8	E1a_E2a	KnownJunction	0	66.19	149.25	39.16	257.18	11.09	131.08	25.55
9	E2_Aa	NovelBoundary	1	54.63	5.73	8.52	0.00	0.00	5.90	0.66
10	ER2a	ExonRegion	0	90.11	219.96	49.21	269.32	11.62	145.25	26.15
11	E2a_E4a	KnownJunction	0	108.05	243.04	52.14	260.64	12.26	165.81	23.03
12	ER3a	ExonRegion	0	0.43	0.00	0.00	0.04	0.00	0.00	0.00
13	E3a_E4a	KnownJunction	0	1.70	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	0	199.12	332.58	94.88	379.30	17.54	267.69	46.70
15	E4a_E5a	KnownJunction	0	70.63	109.63	48.57	202.45	15.35	137.91	32.59
16	I4_AR3	ActiveIntronRegion	0	149.11	151.62	38.84	151.63	3.43	87.92	15.31
17	ER5a	ExonRegion	0	62.00	150.18	42.58	202.63	15.64	148.24	30.70
18	E5_Da	NovelBoundary	0	27.17	78.24	20.81	110.04	8.25	60.89	14.82
19	E5b_E6a	KnownJunction	0	52.81	154.69	35.38	187.06	17.61	83.62	31.64
20	E5b_E7a	NovelJunction	1	0.70	8.20	1.62	30.72	0.00	8.66	0.00
21	ER5b	ExonRegion	0	53.72	148.43	35.65	184.10	16.34	102.76	31.34
22	ER6a	ExonRegion	1	57.30	141.04	41.53	173.85	15.14	127.72	35.07
23	E6a_E7a	KnownJunction	0	61.12	125.03	40.44	181.48	10.49	149.65	33.51
24	ER7a	ExonRegion	1	51.35	104.99	36.99	148.53	9.85	114.20	32.24
25	E7_Da	NovelBoundary	0	18.01	31.97	10.09	27.23	0.00	13.96	2.92
26	E7a_E8a	KnownJunction	0	42.73	79.23	38.86	141.33	15.15	73.70	30.90
27	E7a_E9a	NovelJunction	0	0.80	1.60	1.49	10.51	0.00	4.13	0.63
28	I7_AR1	ActiveIntronRegion	0	23.08	22.47	13.43	12.72	0.26	9.31	4.80
29	I7_SR1	SilentIntronRegion	0	31.67	8.05	19.45	10.76	1.10	7.39	7.93
30	I7_AR2	ActiveIntronRegion	0	22.92	14.06	14.01	7.85	0.72	10.81	7.81
31	ER8a	ExonRegion	1	51.17	87.08	39.20	131.60	15.53	86.30	32.98
32	E8_Da	NovelBoundary	1	7.94	12.69	8.81	46.14	1.18	32.27	4.70
33	E8a_E9a	KnownJunction	0	46.51	68.80	33.77	107.23	18.03	81.79	34.34
34	I8_AR1	ActiveIntronRegion	0	12.05	22.64	6.87	35.96	0.23	31.01	2.22
35	ER9a	ExonRegion	0	79.22	124.82	52.16	189.86	16.41	132.12	36.81
36	E9_Da	NovelBoundary	1	7.89	18.86	7.27	60.55	0.00	9.49	1.56
37	E9a_E10a	KnownJunction	0	109.40	140.47	70.00	231.20	24.53	151.34	40.69
38	ER10a	ExonRegion	0	104.69	139.29	61.00	220.18	29.30	151.87	41.08
39	E10a_E11a	KnownJunction	0	116.55	145.65	62.04	244.98	25.82	160.80	40.73
40	ER11a	ExonRegion	0	109.24	149.70	61.94	237.85	18.21	161.29	41.44
41	E11a_E12a	KnownJunction	0	89.17	152.24	43.64	234.50	17.98	112.21	32.52
42	E11a_E13a	NovelJunction	0	1.40	1.63	0.00	8.61	0.00	4.40	3.86
43	ER12a	ExonRegion	0	77.83	119.44	44.52	194.95	19.39	123.01	31.69
44	E12a_E13a	KnownJunction	0	69.10	117.07	36.37	191.40	16.97	109.61	32.53
45	I12_AR1	ActiveIntronRegion	0	25.54	9.50	13.69	10.30	1.52	5.05	2.53
46	ER13a	ExonRegion	0	81.30	127.87	44.58	179.51	19.59	124.13	38.17
47	E13_Da	NovelBoundary	0	28.77	44.16	21.45	42.53	0.00	27.31	5.19
48	E13a_E14a	KnownJunction	0	65.93	72.96	28.76	106.20	20.70	82.25	18.62
49	E13a_E15a	NovelJunction	1	2.42	6.78	2.96	16.99	0.00	36.80	2.94
50	I13_AR1	ActiveIntronRegion	0	32.02	38.31	16.69	41.49	2.35	27.05	6.61
51	ER14a	ExonRegion	0	117.74	98.05	52.71	140.92	23.20	113.73	39.78
52	E14a_E15a	KnownJunction	0	126.33	110.16	65.36	177.96	27.48	117.06	44.03
53	E15_Aa	NovelBoundary	1	70.46	1.52	34.00	1.33	0.00	5.15	0.85
54	ER15a	ExonRegion	0	149.80	114.36	76.16	212.05	24.62	145.58	45.44
55	E15a_E16a	KnownJunction	0	141.80	95.02	56.40	191.26	16.85	150.35	48.02
56	ER16a	ExonRegion	0	109.94	76.16	58.35	162.73	18.75	116.56	37.37
57	E16a_E17a	KnownJunction	0	134.94	62.76	74.29	178.64	10.97	144.85	33.19
58	ER17a	ExonRegion	0	124.12	93.22	91.96	174.39	15.31	156.97	45.64
59	E17a_E18a	KnownJunction	0	108.60	88.38	67.50	151.76	13.58	156.56	35.53
60	ER18a	ExonRegion	0	93.59	77.77	67.70	137.24	12.55	104.51	31.94
61	E18a_E19b	KnownJunction	0	72.60	59.93	49.36	123.83	16.16	60.86	25.74
62	E18a_E20a	NovelJunction	1	2.79	22.46	4.15	15.23	1.15	3.11	0.72
63	ER19a	ExonRegion	0	14.03	6.61	8.61	10.63	0.40	7.31	3.29
64	E19_Ab	KnownBoundary	0	26.50	4.78	11.01	21.05	1.18	22.08	4.24
65	ER19b	ExonRegion	0	102.92	72.85	62.58	168.59	17.21	105.80	34.31
66	E19_Da	KnownBoundary	0	21.41	7.07	7.08	14.58	0.00	3.11	7.28
67	E19a_E20a	KnownJunction	0	57.38	56.98	54.42	145.45	19.99	116.47	28.56
68	ER19c	ExonRegion	0	40.02	13.93	21.93	12.60	30.02	11.65	9.37
69	E19b_E20a	KnownJunction	0	2.80	3.05	2.24	7.31	0.00	0.00	0.00
70	ER20a	ExonRegion	0	117.76	116.13	77.22	232.96	24.39	182.05	49.21
71	E20a_E21a	KnownJunction	0	123.05	130.49	77.59	241.49	16.55	217.77	56.34
72	ER21a	ExonRegion	0	124.10	117.09	81.15	265.84	19.39	210.13	48.92
73	E21a_E22a	KnownJunction	0	118.03	99.36	79.76	262.65	25.34	197.57	38.95
74	ER22a	ExonRegion	0	141.05	136.02	95.93	279.84	26.68	211.29	53.67
75	E22a_E23a	KnownJunction	0	91.56	109.76	74.42	235.34	19.73	174.20	45.79
76	ER23a	ExonRegion	0	134.53	101.40	72.20	228.90	20.73	165.68	44.01
77	E23a_E24a	KnownJunction	0	128.53	53.73	52.61	152.90	11.80	122.98	29.51
78	E23a_E25a	KnownJunction	1	1.55	0.00	2.23	19.37	0.00	0.00	0.00
79	ER24a	ExonRegion	0	126.62	62.41	50.09	159.57	12.98	129.79	31.38
80	E24a_E25a	KnownJunction	1	158.99	52.28	40.75	158.97	8.23	142.23	10.56
81	ER25a	ExonRegion	0	182.32	74.94	66.33	189.04	21.62	201.00	44.68
82	E25a_E26a	KnownJunction	0	143.95	83.23	65.34	181.43	12.68	191.40	56.65
83	E25a_E27a	NovelJunction	1	12.72	5.83	7.26	22.89	0.00	27.23	1.39
84	I25_AR1	ActiveIntronRegion	0	25.15	4.81	6.90	7.74	0.86	3.70	3.26
85	ER26a	ExonRegion	0	110.19	99.64	46.04	161.57	7.33	184.47	35.05
86	E26a_E27a	KnownJunction	0	85.95	65.60	35.61	121.45	7.56	142.47	24.35
87	E27_Aa	NovelBoundary	0	34.75	12.56	7.59	6.20	2.26	12.84	5.12
88	ER27a	ExonRegion	0	95.84	78.97	40.22	156.46	14.09	164.92	39.24
89	E27a_E28a	KnownJunction	0	3.14	2.52	0.00	4.23	8.71	4.05	0.75
90	E27a_E29a	KnownJunction	0	68.55	69.93	29.23	145.10	8.55	133.52	25.88
91	ER28a	ExonRegion	0	8.41	2.75	2.09	6.79	3.54	7.04	2.58
92	E28_Da	NovelBoundary	0	26.50	5.65	10.52	8.67	4.29	20.18	9.89
93	ER29a	ExonRegion	0	182.80	93.13	92.30	189.67	28.78	189.16	51.68
94	E29_Da	KnownBoundary	0	81.63	56.77	28.34	95.63	7.31	129.42	22.99
95	ER29b	ExonRegion	1	214.34	66.40	92.50	130.88	29.24	162.81	30.09
96	IG22	Intergenic	0	22.47	12.97	12.39	25.54	4.71	33.28	7.17
97	IG22_AR1	ActiveIntergenicRegion	0	93.44	58.18	53.63	117.47	19.55	154.63	27.22