Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRDN	Gene	0	0.00	0.00	0.00	0.00	11.63	3.14	0.00
2	334268	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.06	0.00
3	265491	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	359698	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	333613	Transcript	0	0.00	0.00	0.00	0.00	10.26	0.00	0.00
6	361029	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	398178	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	398161	Transcript	0	0.00	0.00	0.00	0.00	0.08	0.05	0.00
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	2.12	0.00
10	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	3.43	0.00
11	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	12.07	0.00
12	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	8.09	0.00
13	ER1c	ExonRegion	0	0.00	0.00	0.00	0.00	0.79	12.12	0.00
14	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	17.04	0.00
15	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	87.36	10.16	0.00
17	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	9.52	0.00	0.00
18	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	64.52	8.82	0.00
19	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	53.45	12.82	0.00
20	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	50.81	6.16	0.00
21	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	39.56	7.43	0.00
22	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	25.13	4.80	0.00
23	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	48.74	3.76	0.00
24	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E6a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	47.67	1.21	0.00
26	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	23.33	0.58	0.00
29	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	53.94	0.00	0.00
30	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	63.14	8.66	0.00
31	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	79.05	10.48	0.00
32	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	84.45	11.28	0.00
33	E11_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	63.99	0.00	0.00
34	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	8.60	0.00	0.00
35	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	I11	Intron	0	0.00	0.04	0.00	0.00	20.07	0.62	0.00
37	I11_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	41.04	0.60	0.00
38	I11_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	42.44	0.99	0.00
39	I11_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	32.66	1.44	0.00
40	E12_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	17.36	1.10	0.00
41	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	11.91	0.00	0.00
42	E12_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	30.61	0.00	0.00
43	I12	Intron	0	0.00	0.00	0.00	0.00	9.41	0.23	0.00
44	I12_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	10.52	0.00	0.00
45	I12_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	9.06	0.31	0.00
46	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	1.30	0.61	0.00
47	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	2.12	1.55	0.00
48	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	4.05	0.90	0.00
49	E14a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E14b_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	E14b_E16b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER14b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E15a_E16c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	3.08	1.23	0.00
56	ER16b	ExonRegion	0	0.00	0.00	0.00	0.00	3.24	1.23	0.00
57	ER16c	ExonRegion	0	0.00	0.00	0.00	0.00	2.70	1.99	0.00
58	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	1.04	1.66	0.00
59	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	1.57	2.57	0.00
60	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	E17a_E18b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.32	0.00
62	ER18a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.35	0.00
63	ER18b	ExonRegion	0	0.00	0.00	0.00	0.00	1.05	1.71	0.00
64	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	2.40	0.00	0.00
65	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	3.04	0.00	0.00
66	ER19a	ExonRegion	0	0.00	0.00	0.00	0.00	1.94	2.41	0.00
67	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	2.19	4.66	0.00
68	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	1.62	7.97	0.00
69	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	6.41	0.00
70	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	1.62	9.11	0.00
71	ER22a	ExonRegion	0	0.00	0.00	0.00	0.00	0.37	11.44	0.00
72	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.88	9.49	0.00
73	E23a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	ER23a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	7.36	0.00
75	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	ER24a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	5.49	0.00
77	ER25a	ExonRegion	0	0.00	0.00	0.00	0.00	0.66	2.32	0.00
78	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	2.97	0.00
79	ER26a	ExonRegion	0	0.00	0.00	0.00	0.00	3.26	1.35	0.00
80	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
81	ER27a	ExonRegion	0	0.00	0.00	0.00	0.00	1.18	1.23	0.00
82	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	2.57	0.00
83	ER28a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00
84	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.55	0.00
85	ER29a	ExonRegion	0	0.00	0.00	0.00	0.00	2.04	2.61	0.00
86	E29a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	3.25	1.50	0.00
87	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	3.32	4.98	0.00
88	ER30a	ExonRegion	0	0.00	0.00	0.00	0.00	3.84	5.13	0.00
89	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.22	0.00
90	ER31a	ExonRegion	0	0.00	0.00	0.00	0.00	2.21	6.99	0.00
91	E32a_E33a	KnownJunction	0	0.00	0.00	0.00	0.00	2.14	0.00	0.00
92	ER32a	ExonRegion	0	0.00	0.00	0.00	0.00	1.40	3.88	0.00
93	E33a_E34a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	4.85	0.00
94	ER33a	ExonRegion	0	0.00	0.00	0.00	0.00	1.23	2.54	0.00
95	ER34a	ExonRegion	0	0.00	0.00	0.00	0.00	0.47	1.02	0.00
96	E34a_E35a	KnownJunction	0	0.00	0.00	0.00	0.00	1.91	0.00	0.00
97	ER35a	ExonRegion	0	0.00	0.00	0.00	0.00	1.37	0.00	0.00
98	E35a_E36a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
99	E36a_E37a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
100	ER36a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
101	ER37a	ExonRegion	0	0.00	0.00	0.00	0.00	1.89	0.93	0.00
102	E37a_E38a	KnownJunction	0	0.00	0.00	0.00	0.00	2.35	1.66	0.00
103	E38a_E39a	KnownJunction	0	0.00	0.00	0.00	0.00	3.32	0.00	0.00
104	ER38a	ExonRegion	0	0.00	0.00	0.00	0.00	3.43	1.23	0.00
105	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	1.06	0.00	0.00
106	ER39a	ExonRegion	0	0.00	0.00	0.00	0.00	2.55	0.95	0.00
107	ER40a	ExonRegion	0	0.00	0.00	0.00	0.00	0.66	0.00	0.00
108	E40a_E41a	KnownJunction	0	0.00	0.00	0.00	0.00	0.92	0.00	0.00
109	ER41a	ExonRegion	0	0.00	0.00	0.00	0.00	2.16	0.00	0.00
110	E41a_E42a	KnownJunction	0	0.00	0.00	0.00	0.00	2.35	0.00	0.00
111	ER42a	ExonRegion	0	0.00	0.00	0.00	0.00	2.38	0.00	0.00
112	E42a_E43a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
113	E42a_E44a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	1.31	0.00
114	E42a_E45b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
115	E43a_E45a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
116	ER43a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
117	E44a_E45b	KnownJunction	0	0.00	0.00	0.00	0.00	4.52	0.00	0.00
118	ER44a	ExonRegion	0	0.00	0.00	0.00	0.00	3.81	0.00	0.00
119	ER45a	ExonRegion	0	0.00	0.00	0.00	0.00	0.54	0.00	0.00
120	ER45b	ExonRegion	0	0.00	0.00	0.00	0.00	3.73	0.00	0.00
121	E45a_E46a	KnownJunction	0	0.00	0.00	0.00	0.00	2.03	0.00	0.00
122	ER46a	ExonRegion	0	0.00	0.00	0.00	0.00	5.08	0.00	0.00
123	E46a_E47a	KnownJunction	0	0.00	0.00	0.00	0.00	7.42	1.29	0.00
124	ER47a	ExonRegion	0	0.00	0.00	0.00	0.00	1.22	1.32	0.00
125	ER47b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00