Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MTO1	Gene	0	51.21	36.39	80.99	59.87	108.52	62.67	72.86
2	370305	Transcript	0	4.90	3.95	10.19	8.94	43.64	5.80	6.62
3	370308	Transcript	0	0	0	0	0	0	0	0
4	357845	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	370300	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	1.92	1.76	6.84	5.36	33.97	2.51	3.07
7	E1_Da	NovelBoundary	1	35.88	17.08	39.09	40.99	95.28	19.27	21.94
8	E1a_E2a	KnownJunction	0	7.88	6.15	13.54	12.52	53.30	9.09	10.18
9	ER1b	ExonRegion	0	16.40	14.87	21.86	26.14	97.57	18.85	16.47
10	ER1c	ExonRegion	0	16.29	26.48	23.69	31.53	36.75	36.84	37.06
11	E1b_E2a	KnownJunction	0	25.42	27.61	29.46	40.96	81.24	24.76	45.75
12	I1_AR2	ActiveIntronRegion	1	0.22	2.96	2.38	12.37	2.91	6.66	1.92
13	ER2a	ExonRegion	0	55.28	55.54	76.43	65.99	106.52	63.08	70.99
14	E2a_E3a	KnownJunction	0	71.52	41.98	128.51	82.87	211.09	79.49	93.81
15	ER3a	ExonRegion	0	77.17	49.86	117.85	87.91	151.98	109.45	102.50
16	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E3b_E4a	KnownJunction	0	68.70	61.76	110.81	98.45	120.54	94.34	99.49
18	ER3b	ExonRegion	0	69.16	51.02	109.74	91.03	131.20	88.27	100.51
19	ER4a	ExonRegion	0	54.48	53.53	112.04	81.04	157.04	94.10	112.97
20	E4_Da	NovelBoundary	1	9.26	1.10	9.69	18.42	2.07	18.52	0.89
21	E4a_E5a	KnownJunction	0	53.01	50.99	97.68	71.14	166.12	77.48	125.18
22	ER5a	ExonRegion	0	44.97	45.30	98.26	64.88	154.32	71.15	105.69
23	E5a_E6a	KnownJunction	0	53.61	44.37	108.35	56.78	171.88	62.04	95.22
24	ER6a	ExonRegion	0	48.59	46.22	104.15	70.31	144.70	74.98	118.52
25	E6_Da	NovelBoundary	1	16.39	2.81	11.61	2.49	12.03	7.66	2.62
26	E6a_E7a	KnownJunction	0	0.00	1.58	2.67	1.68	0.00	0.00	3.22
27	E6a_E8a	KnownJunction	1	40.32	45.48	91.96	67.62	190.46	75.28	127.72
28	E7_Aa	NovelBoundary	0	265.72	408.39	196.01	319.84	137.81	250.74	115.21
29	ER7a	ExonRegion	0	11.42	3.43	9.79	3.36	26.11	7.78	9.78
30	E7a_E8a	KnownJunction	1	18.69	4.31	17.76	10.59	13.49	7.50	9.80
31	ER8a	ExonRegion	0	45.11	36.22	98.87	65.65	152.30	62.96	112.16
32	E8a_E9a	KnownJunction	1	19.69	25.43	42.65	44.29	104.73	33.12	106.63
33	E9_Aa	NovelBoundary	1	7.19	4.41	14.84	17.12	3.04	18.63	7.32
34	ER9a	ExonRegion	0	46.63	35.21	66.45	59.42	136.32	44.48	86.39
35	E9_Da	NovelBoundary	1	9.95	2.84	5.27	16.61	0.00	1.31	0.00
36	E9a_E10a	KnownJunction	0	53.96	33.84	64.91	44.05	131.72	54.73	65.41
37	ER10a	ExonRegion	0	100.77	47.79	126.96	93.67	152.13	80.60	77.09
38	E10_Da	NovelBoundary	1	16.34	2.68	9.27	25.36	0.00	20.15	0.59
39	E10a_E11a	KnownJunction	0	82.38	41.90	114.17	79.54	135.02	66.95	77.05
40	I10	Intron	0	6.99	5.67	8.70	12.94	0.42	14.99	1.04
41	I10_AR1	ActiveIntronRegion	0	8.55	5.89	9.47	13.31	0.62	18.53	0.87
42	I10_SR2	SilentIntronRegion	0	5.81	5.79	8.12	13.15	0.21	12.16	1.27
43	E11_Aa	NovelBoundary	1	17.98	5.57	12.82	9.32	0.00	21.49	0.67
44	ER11a	ExonRegion	0	86.33	40.96	132.85	84.19	232.62	70.55	89.15
45	E11_Da	NovelBoundary	1	18.19	4.23	16.27	12.57	0.00	7.02	0.79
46	E11a_E12a	KnownJunction	0	132.85	51.62	156.08	98.72	369.33	76.08	116.01
47	E12_Aa	NovelBoundary	1	15.29	7.59	4.63	6.12	2.24	3.59	0.62
48	ER12a	ExonRegion	0	119.82	58.76	157.28	117.16	175.38	113.00	135.71
49	E12_Da	NovelBoundary	1	16.39	2.15	10.20	15.06	0.00	2.84	0.82
50	E12a_E13a	KnownJunction	0	139.58	43.58	174.36	109.50	150.42	116.02	140.63
51	ER13a	ExonRegion	0	44.35	25.42	78.87	56.89	93.42	64.36	68.35
52	E13_Da	KnownBoundary	0	29.67	23.49	43.31	34.11	39.88	57.16	39.83
53	ER13b	ExonRegion	1	34.54	19.40	43.36	27.57	26.61	36.86	17.25
54	IG27	Intergenic	0	19.67	9.13	23.31	15.73	4.61	14.00	4.66
55	IG27_AR1	ActiveIntergenicRegion	0	17.16	14.26	24.60	20.41	11.47	16.39	5.05
56	IG27_SR1	SilentIntergenicRegion	0	14.19	6.50	18.00	13.18	2.95	14.42	2.65
57	IG27_AR2	ActiveIntergenicRegion	0	25.73	9.93	26.79	21.88	0.85	20.96	3.24
58	IG27_SR2	SilentIntergenicRegion	0	11.00	3.60	11.47	6.23	0.50	4.81	1.72
59	IG27_AR3	ActiveIntergenicRegion	0	55.60	26.33	68.31	35.71	17.24	19.57	23.51
60	IG27_SR3	SilentIntergenicRegion	0	47.46	24.68	47.51	29.01	19.65	16.45	11.32