Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AGER	Gene	0	6.38	4.63	6.80	9.85	19.81	10.33	6.94
2	375056	Transcript	0	3.71	4.86	6.88	3.01	12.77	6.94	4.24
3	375059	Transcript	0	0.00	1.31	0.00	0.00	0.00	0.00	0.64
4	375070	Transcript	0	2.65	0.46	3.33	3.04	5.33	8.80	2.51
5	375065	Transcript	0	0.60	0.00	3.10	0.00	0.00	0.00	0.00
6	375067	Transcript	0	0.03	0.14	0.30	0.10	0.00	0.86	0.00
7	375076	Transcript	0	0	0	0	0	0	0	0
8	375069	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	375055	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	375061	Transcript	0	0.67	2.10	1.41	5.85	0.00	2.73	0.82
11	IG3	Intergenic	0	3.70	4.63	4.93	6.52	12.92	11.09	5.35
12	IG3_AR1	ActiveIntergenicRegion	0	3.72	4.65	4.95	6.54	12.97	11.13	5.38
13	ER1a	ExonRegion	0	0.58	1.07	1.03	3.64	6.90	0.83	0.00
14	ER1b	ExonRegion	0	1.89	1.21	2.71	4.99	10.71	1.23	0.00
15	E1_Db	NovelBoundary	0	3.25	5.94	4.40	12.68	11.46	13.80	11.74
16	E1b_E2a	KnownJunction	0	1.25	0.00	3.15	2.41	4.01	3.48	0.69
17	ER1c	ExonRegion	0	2.31	1.21	3.32	5.03	6.48	1.86	0.42
18	I1	Intron	0	1.28	2.02	0.84	3.07	9.67	6.59	5.30
19	I1_AR1	ActiveIntronRegion	0	1.29	2.04	0.85	3.10	9.75	6.67	5.35
20	E2_Aa	NovelBoundary	0	2.55	0.00	2.53	4.09	8.62	14.66	4.77
21	ER2a	ExonRegion	0	0.65	2.42	3.48	2.76	9.57	3.22	4.24
22	E2a_E3a	KnownJunction	0	0.00	1.29	2.26	3.93	17.29	1.21	3.88
23	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER3a	ExonRegion	0	1.52	1.61	2.65	4.67	18.42	3.82	5.62
25	E3_Ab	KnownBoundary	0	6.39	2.60	10.89	8.75	18.58	7.58	10.00
26	ER3b	ExonRegion	0	2.57	5.98	6.64	9.93	14.44	14.80	6.64
27	E3_Da	KnownBoundary	1	5.21	6.20	9.51	5.04	19.73	24.63	7.88
28	E3a_E10b	KnownJunction	0	0.60	0.00	3.10	0.00	0.00	0.00	0.00
29	ER3c	ExonRegion	1	7.42	6.51	12.47	4.19	28.50	15.91	11.14
30	E3_Db	NovelBoundary	0	5.22	5.31	12.10	4.14	33.36	13.40	10.99
31	E3b_E7b	KnownJunction	0	3.71	4.86	6.88	3.01	12.77	6.94	4.24
32	E3_Dc	NovelBoundary	0	8.11	1.52	7.89	1.30	7.70	4.90	1.76
33	E3c_E4a	KnownJunction	0	6.28	0.00	8.13	2.93	19.85	5.60	11.39
34	ER3d	ExonRegion	0	8.66	3.32	11.67	4.27	28.03	8.53	12.12
35	I3	Intron	1	3.86	1.11	3.40	2.85	4.70	12.27	2.45
36	I3_AR1	ActiveIntronRegion	1	3.90	1.13	3.43	2.89	4.75	12.38	2.48
37	E4_Aa	NovelBoundary	0	14.74	2.78	10.79	10.16	7.54	16.40	6.42
38	ER4a	ExonRegion	0	12.60	4.19	13.71	10.49	37.75	12.88	13.96
39	E4_Da	KnownBoundary	0	9.58	2.57	5.07	8.26	9.57	19.00	7.64
40	E4a_E5a	KnownJunction	0	7.16	2.78	9.15	6.07	32.53	6.78	8.76
41	ER4b	ExonRegion	0	3.54	0.91	4.09	4.39	5.52	11.77	4.29
42	E4b_E5a	KnownJunction	0	1.77	0.00	2.57	1.68	5.14	5.82	0.73
43	ER5a	ExonRegion	0	12.40	1.10	10.46	7.00	29.71	13.37	12.01
44	E5a_E6a	KnownJunction	0	11.78	1.63	9.23	8.67	24.85	11.28	8.94
45	ER6a	ExonRegion	0	11.41	5.86	9.10	16.40	29.38	17.97	9.66
46	E6a_E7a	KnownJunction	0	3.20	4.44	3.77	5.15	7.22	10.18	4.26
47	E7_Ab	NovelBoundary	0	3.37	6.44	3.97	7.04	24.48	12.62	6.19
48	ER7a	ExonRegion	0	5.64	6.07	3.87	11.22	16.54	15.06	5.59
49	ER7b	ExonRegion	0	6.75	7.05	5.08	17.01	29.60	15.90	9.11
50	E7_Da	KnownBoundary	0	6.51	2.84	4.68	16.04	27.34	11.52	9.03
51	ER7c	ExonRegion	0	7.58	10.05	7.84	21.00	24.08	14.08	8.28
52	E7b_E8a	KnownJunction	0	5.21	5.31	3.65	6.29	19.73	11.71	5.90
53	E7b_E8b	KnownJunction	0	0.00	1.31	0.00	0.00	0.00	0.00	0.64
54	E7b_E9a	KnownJunction	0	0.67	2.10	1.41	5.85	0.00	2.73	0.82
55	E7c_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER7d	ExonRegion	0	0.08	0.42	0.91	0.30	0.00	2.58	0.00
57	ER8a	ExonRegion	0	5.86	4.42	4.63	6.42	15.26	10.62	5.94
58	E8_Ab	KnownBoundary	0	7.71	3.73	4.01	9.67	16.32	6.97	7.65
59	ER8b	ExonRegion	0	7.91	4.40	3.99	6.60	19.98	9.06	7.50
60	E8a_E9a	KnownJunction	0	4.96	3.91	4.73	8.89	21.14	10.08	2.38
61	E8a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER9a	ExonRegion	0	6.35	5.94	5.54	15.79	21.51	11.94	8.05
63	ER9b	ExonRegion	0	1.50	1.66	2.79	4.12	3.59	2.60	5.42
64	E9b_E11a	KnownJunction	0	1.03	0.00	1.31	2.17	2.33	0.00	1.12
65	ER10a	ExonRegion	0	4.76	7.40	3.25	6.84	13.70	12.34	2.02
66	E10_Ab	KnownBoundary	0	5.04	8.46	4.76	7.23	17.59	11.85	1.45
67	ER10b	ExonRegion	0	6.22	6.03	5.53	7.04	20.78	9.28	4.00
68	E10a_E11a	KnownJunction	0	7.03	3.57	10.19	10.02	33.52	8.28	7.28
69	ER11a	ExonRegion	0	9.10	7.37	11.21	20.92	22.46	13.93	8.57
70	E11_Da	KnownBoundary	0	6.91	10.56	3.39	15.44	13.69	8.12	3.83
71	ER11b	ExonRegion	0	5.24	4.89	7.65	10.38	20.88	4.86	5.04
72	ER11c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00