Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COL11A2	Gene	0	1.20	1.09	2.28	5.85	4.76	5.15	0.75
2	374708	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	374697	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	357486	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	374712	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	374714	Transcript	0	0	0	0	0	0	0	0
7	341947	Transcript	0	0	0	0	0	0	0	0
8	374713	Transcript	0	0.00	0.00	0.00	1.27	0.00	0.00	0.00
9	361917	Transcript	0	0.00	0.00	0.88	0.00	0.00	0.00	0.00
10	395197	Transcript	0	0	0	0	0	0	0	0
11	395194	Transcript	0	0.00	0.00	0.12	0.68	1.86	1.63	0.55
12	395196	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER1c	ExonRegion	0	0.21	0.93	0.17	0.98	1.58	0.63	0.00
17	E1a_E2a	KnownJunction	0	2.07	0.00	0.00	0.00	1.89	0.00	0.00
18	ER2a	ExonRegion	0	1.36	0.71	0.70	4.11	2.33	4.61	0.73
19	E2a_E3a	KnownJunction	0	3.69	1.08	0.00	11.65	4.26	5.41	0.59
20	ER3a	ExonRegion	0	0.56	1.41	3.19	8.25	4.14	3.43	0.62
21	E3a_E4a	KnownJunction	0	0.00	1.52	2.10	7.10	0.99	1.29	0.77
22	ER4a	ExonRegion	0	0.82	2.08	3.58	5.64	7.74	6.43	1.92
23	E4a_E5a	KnownJunction	0	1.40	4.31	4.30	3.03	10.44	4.48	0.54
24	ER5a	ExonRegion	0	0.89	1.43	4.04	4.94	5.90	9.60	1.84
25	E5_Da	KnownBoundary	0	0.00	0.00	0.89	1.46	2.19	4.48	1.78
26	E5a_E6a	KnownJunction	0	1.03	0.00	1.58	1.35	9.08	1.66	0.85
27	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	1.96	0.00	0.00
28	E5a_E8a	KnownJunction	0	0.00	0.00	0.00	1.27	0.00	0.00	0.00
29	E5a_E9a	KnownJunction	0	0.00	0.00	0.88	0.00	0.00	0.00	0.00
30	ER5b	ExonRegion	0	0.00	0.00	0.12	0.68	1.86	1.63	0.55
31	ER6a	ExonRegion	0	0.34	0.00	1.89	0.30	4.33	0.58	0.24
32	E6a_E7a	KnownJunction	0	0.00	0.00	5.23	0.00	1.18	0.00	0.00
33	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	E6a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER7a	ExonRegion	0	0.00	0.00	3.81	0.00	2.51	0.00	0.60
36	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.72
37	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER8a	ExonRegion	0	0.00	0.00	0.28	3.39	0.00	1.04	0.36
39	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	1.49	0.00	0.00	0.00
40	ER9a	ExonRegion	0	0.00	0.00	0.95	1.75	1.00	0.39	0.00
41	E9a_E10a	KnownJunction	0	0.00	0.00	1.54	5.77	2.19	1.34	0.00
42	ER10a	ExonRegion	0	0.00	0.00	0.44	3.59	1.58	2.39	0.00
43	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	1.68	2.33	1.37	0.00
44	ER11a	ExonRegion	0	0.00	0.00	0.89	0.93	2.87	2.47	0.66
45	E11a_E12a	KnownJunction	0	0.00	0.00	0.73	1.49	1.15	0.00	0.00
46	ER12a	ExonRegion	0	0.00	0.00	1.55	2.66	0.95	0.88	0.10
47	E12a_E13a	KnownJunction	0	0.00	0.00	1.71	4.01	0.00	3.11	0.00
48	ER13a	ExonRegion	0	0.67	0.00	1.53	2.06	2.16	3.47	0.40
49	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.80
50	ER14a	ExonRegion	0	0.19	0.51	0.88	1.09	2.17	3.03	0.30
51	E14a_E15a	KnownJunction	0	0.75	1.44	2.39	1.49	2.07	7.83	0.00
52	ER15a	ExonRegion	0	0.91	1.69	2.30	2.12	4.50	5.43	0.00
53	E15a_E16a	KnownJunction	0	0.00	1.42	1.71	2.60	2.31	0.00	0.00
54	ER16a	ExonRegion	0	0.88	1.19	3.06	1.71	3.90	0.00	0.00
55	E16a_E17a	KnownJunction	0	1.40	0.00	1.31	1.27	5.42	0.00	0.00
56	ER17a	ExonRegion	0	0.17	0.00	0.89	0.44	4.74	2.47	0.17
57	E17a_E18a	KnownJunction	0	0.00	0.00	1.88	0.00	3.46	4.66	0.64
58	ER18a	ExonRegion	0	1.11	0.00	3.04	1.94	4.50	5.83	0.75
59	E18a_E19a	KnownJunction	0	1.67	0.00	2.69	2.49	1.01	4.82	0.00
60	ER19a	ExonRegion	0	2.45	0.00	1.59	2.89	2.38	2.75	0.77
61	E19a_E20a	KnownJunction	0	1.65	0.00	0.73	0.00	3.43	2.89	0.62
62	ER20a	ExonRegion	0	1.84	0.05	0.38	1.63	3.28	2.53	0.96
63	E20a_E21a	KnownJunction	0	0.82	0.00	0.00	1.49	4.75	1.66	0.89
64	ER21a	ExonRegion	0	0.31	1.21	0.68	1.48	3.00	2.75	1.79
65	E21a_E23a	KnownJunction	0	0.00	1.34	1.39	1.65	1.18	2.95	0.70
66	ER22a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	ER23a	ExonRegion	0	1.52	0.54	1.35	4.77	4.32	3.84	0.43
68	E23a_E24a	KnownJunction	0	2.07	0.00	1.72	5.99	6.73	3.32	0.00
69	ER24a	ExonRegion	0	1.81	0.81	1.30	3.74	3.97	2.70	0.61
70	E24a_E25a	KnownJunction	0	0.72	1.44	1.54	1.33	0.95	1.55	0.85
71	ER25a	ExonRegion	0	0.20	3.43	0.39	1.58	4.41	2.23	1.20
72	E25a_E26a	KnownJunction	0	0.00	2.94	0.00	3.14	3.53	2.92	0.85
73	ER26a	ExonRegion	0	0.00	2.14	0.36	3.37	3.29	2.92	1.43
74	E26a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
75	E26b_E27a	KnownJunction	0	0.00	0.00	0.89	2.90	4.06	2.95	1.53
76	ER26b	ExonRegion	0	0.00	0.30	0.68	4.99	2.96	4.72	1.35
77	ER27a	ExonRegion	0	0.00	0.86	1.93	6.51	4.50	7.14	0.90
78	E27a_E28a	KnownJunction	0	0.00	2.99	3.22	7.26	2.01	6.16	0.00
79	ER28a	ExonRegion	0	0.00	4.12	2.99	7.39	2.58	2.91	0.01
80	E28a_E29a	KnownJunction	0	0.00	4.41	1.48	3.31	4.22	0.00	0.00
81	ER29a	ExonRegion	0	0.00	2.56	2.05	8.81	2.56	0.82	1.77
82	E29a_E30a	KnownJunction	0	0.00	0.00	2.36	10.05	4.36	1.53	2.67
83	ER30a	ExonRegion	0	0.00	2.14	1.54	10.48	5.40	4.79	1.37
84	E30a_E31a	KnownJunction	0	0.00	2.81	1.61	7.64	6.48	4.21	0.00
85	ER31a	ExonRegion	0	0.78	4.38	2.43	10.83	3.36	4.19	0.33
86	E31a_E33a	KnownJunction	0	2.74	4.20	4.91	7.34	0.97	4.66	1.65
87	E32a_E65a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
88	ER32a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	ER33a	ExonRegion	0	1.69	2.43	2.70	5.29	1.41	3.25	1.24
90	E33a_E34a	KnownJunction	0	0.00	0.00	2.21	3.71	0.00	0.00	0.00
91	ER34a	ExonRegion	0	0.00	0.16	1.63	2.72	3.97	0.86	0.00
92	E34a_E35a	KnownJunction	0	0.00	1.02	1.55	1.49	2.77	1.66	0.00
93	ER35a	ExonRegion	0	0.09	0.00	1.66	1.44	1.19	2.18	0.00
94	E35a_E36a	KnownJunction	0	0.00	0.00	0.89	1.38	1.18	1.66	0.00
95	ER36a	ExonRegion	0	1.52	0.00	1.84	2.24	1.06	2.32	0.00
96	E36a_E37a	KnownJunction	0	1.67	0.00	2.57	1.68	2.35	3.30	0.00
97	ER37a	ExonRegion	0	0.77	0.00	2.02	0.97	1.66	3.65	0.64
98	E37a_E38a	KnownJunction	0	0.00	0.00	2.46	0.00	1.15	5.20	0.87
99	ER38a	ExonRegion	0	0.77	0.00	1.62	0.00	3.27	4.88	0.70
100	E38a_E39a	KnownJunction	0	0.77	0.00	1.93	0.00	0.00	1.47	0.82
101	ER39a	ExonRegion	0	0.36	0.00	4.08	0.42	1.89	2.09	0.62
102	E39a_E40a	KnownJunction	0	0.00	0.00	1.38	1.33	3.20	1.66	0.00
103	ER40a	ExonRegion	0	1.10	0.00	2.09	1.43	2.49	4.06	0.59
104	E40a_E41a	KnownJunction	0	1.60	0.00	1.34	0.00	0.00	4.23	0.86
105	ER41a	ExonRegion	0	1.80	0.00	2.75	1.03	7.57	3.86	1.13
106	E41a_E42a	KnownJunction	0	0.72	0.00	4.81	1.16	8.44	8.68	0.00
107	ER42a	ExonRegion	0	1.93	0.00	2.81	5.67	3.91	6.54	0.31
108	E42a_E43a	KnownJunction	0	2.00	0.00	1.77	6.04	5.28	3.99	0.89
109	ER43a	ExonRegion	0	2.82	0.00	3.04	4.18	6.15	6.22	0.44
110	E43a_E44a	KnownJunction	0	2.87	0.00	3.85	4.20	5.03	5.55	0.00
111	ER44a	ExonRegion	0	1.92	0.00	2.25	4.93	5.66	5.80	0.91
112	E44a_E45a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
113	ER45a	ExonRegion	0	0.46	0.00	1.42	4.09	3.93	3.38	0.56
114	E45a_E46a	KnownJunction	0	0.77	0.00	2.90	6.10	4.40	2.60	1.40
115	ER46a	ExonRegion	0	1.48	0.00	2.41	6.74	3.61	6.67	1.55
116	E46a_E47a	KnownJunction	0	1.03	0.00	1.38	8.02	1.94	7.45	1.58
117	ER47a	ExonRegion	0	2.16	0.00	1.52	9.38	0.87	5.20	0.70
118	E47a_E48a	KnownJunction	0	2.30	0.00	1.39	8.48	1.01	5.01	1.61
119	ER48a	ExonRegion	0	1.20	0.00	2.48	6.92	4.86	10.19	0.87
120	E48a_E49a	KnownJunction	0	0.77	0.00	3.00	6.34	5.49	7.26	0.83
121	ER49a	ExonRegion	0	1.17	0.00	4.27	12.63	4.69	6.52	1.35
122	E49a_E50a	KnownJunction	0	1.97	0.00	4.27	15.41	4.45	7.32	2.38
123	ER50a	ExonRegion	0	1.21	0.00	3.66	10.35	3.28	7.90	1.05
124	E50a_E51a	KnownJunction	0	0.00	0.00	1.57	6.39	2.12	11.85	0.00
125	ER51a	ExonRegion	0	0.75	0.00	1.34	5.89	3.70	5.99	0.10
126	E51a_E52a	KnownJunction	0	0.90	0.00	2.21	4.63	5.26	1.55	0.00
127	ER52a	ExonRegion	0	1.21	0.09	1.15	4.36	6.03	5.65	0.90
128	E52a_E53a	KnownJunction	0	1.65	0.00	1.61	4.98	6.18	7.29	2.36
129	ER53a	ExonRegion	0	0.48	0.81	2.02	9.50	7.14	6.24	1.42
130	E53a_E54a	KnownJunction	0	0.00	0.00	2.47	8.83	12.08	4.48	1.20
131	ER54a	ExonRegion	0	2.40	1.75	2.62	5.77	10.53	3.45	0.84
132	E54a_E55a	KnownJunction	0	4.42	3.10	2.43	4.36	4.20	1.45	0.69
133	ER55a	ExonRegion	0	3.44	1.66	2.11	6.05	4.08	4.70	0.42
134	E55a_E56a	KnownJunction	0	1.75	0.00	1.54	6.77	5.88	4.72	0.83
135	ER56a	ExonRegion	0	1.01	0.00	2.77	7.71	6.31	4.93	0.62
136	E56a_E57a	KnownJunction	0	0.00	0.00	4.01	5.82	7.22	8.87	0.00
137	ER57a	ExonRegion	0	1.64	0.92	3.95	4.13	5.46	4.97	0.67
138	E57a_E58a	KnownJunction	0	2.29	2.71	3.22	5.85	7.61	1.55	2.12
139	ER58a	ExonRegion	0	1.99	1.25	1.92	2.25	7.92	5.14	0.13
140	E58a_E59a	KnownJunction	0	1.54	1.55	1.55	3.12	4.03	9.92	0.00
141	ER59a	ExonRegion	0	0.53	0.16	1.47	2.66	4.95	8.65	0.22
142	E59a_E60a	KnownJunction	0	0.00	0.00	2.37	3.01	4.54	12.84	0.70
143	ER60a	ExonRegion	0	0.77	1.21	3.02	2.68	3.24	6.70	0.67
144	E60a_E61a	KnownJunction	0	1.69	1.21	3.92	2.49	3.04	6.89	0.00
145	ER61a	ExonRegion	0	1.16	0.75	4.88	6.08	5.98	6.95	0.21
146	E61a_E62a	KnownJunction	0	0.00	2.84	2.66	8.13	6.43	10.53	0.86
147	ER62a	ExonRegion	0	0.34	2.23	3.35	5.61	5.56	6.38	0.59
148	E62a_E63a	KnownJunction	0	0.92	0.00	2.31	4.39	0.90	3.03	0.00
149	ER63a	ExonRegion	0	1.52	1.45	1.28	3.71	1.84	4.22	1.03
150	E63a_E64a	KnownJunction	0	1.03	1.63	0.00	6.07	3.23	4.50	1.65
151	ER64a	ExonRegion	0	3.47	0.76	1.73	6.88	5.95	4.59	1.45
152	E64a_E65a	KnownJunction	0	4.66	0.00	2.83	5.77	9.47	5.25	0.72
153	ER65a	ExonRegion	0	2.62	1.56	3.46	10.19	6.88	10.58	1.11
154	E65a_E66a	KnownJunction	0	1.90	4.86	4.20	20.59	7.47	11.90	0.00
155	ER66a	ExonRegion	0	0.59	1.19	4.27	14.84	7.81	8.29	1.25
156	E66a_E67a	KnownJunction	0	0.92	0.00	4.45	18.48	5.23	8.20	0.63
157	ER67a	ExonRegion	0	1.35	2.01	4.75	17.57	8.24	7.14	1.02
158	E67a_E68a	KnownJunction	0	2.54	4.07	5.60	10.54	11.53	7.61	1.43
159	ER68a	ExonRegion	0	2.52	5.58	3.50	10.11	7.61	4.62	0.87
160	E68_Da	KnownBoundary	0	1.92	5.57	0.89	12.62	5.14	2.97	0.86
161	E68a_E68b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
162	ER68b	ExonRegion	0	3.26	2.24	2.88	8.29	8.05	7.94	1.02
163	E68_Ab	KnownBoundary	0	1.82	1.34	0.65	4.88	10.56	7.24	0.82
164	ER68c	ExonRegion	0	1.28	1.82	1.85	11.54	7.31	10.42	0.91
165	E68_Db	KnownBoundary	0	2.77	0.00	5.37	12.06	14.48	21.47	1.20
166	ER68d	ExonRegion	0	0.35	1.33	2.35	9.81	5.82	7.36	0.56
167	ER68e	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
168	IG30_SR1	SilentIntergenicRegion	0	0.13	0.00	0.00	0.11	9.88	0.21	0.00