Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AL671277.5	Gene	0	1.82	2.99	1.49	2.61	2.77	2.45	1.69
2	376797	Transcript	0	1.89	2.51	1.97	2.29	4.06	2.59	2.26
3	ER1a	ExonRegion	0	1.94	2.51	2.16	2.02	5.78	1.13	1.10
4	E1_Da	NovelBoundary	0	3.22	2.71	5.03	7.72	8.30	0.00	1.98
5	E1a_E2a	KnownJunction	0	1.94	1.29	0.00	0.00	4.54	1.29	2.87
6	ER2a	ExonRegion	0	1.49	0.54	2.50	0.18	7.31	1.61	4.23
7	E2a_E3a	KnownJunction	0	4.01	1.60	4.80	1.14	9.47	1.66	5.99
8	I2_AR1	ActiveIntronRegion	0	1.70	0.19	0.88	0.85	11.09	1.03	1.42
9	ER3a	ExonRegion	0	3.20	3.20	4.92	1.19	8.67	0.81	5.44
10	E3a_E4a	KnownJunction	0	2.47	1.10	5.40	0.00	8.28	0.00	3.65
11	ER4a	ExonRegion	0	3.23	1.90	4.86	1.07	8.23	3.11	5.74
12	E4a_E5a	KnownJunction	0	2.67	0.00	4.38	2.76	11.85	6.30	6.29
13	ER5a	ExonRegion	0	2.03	1.00	3.60	1.35	9.85	5.77	4.29
14	E5a_E6a	KnownJunction	0	1.00	0.00	1.45	1.54	2.90	0.00	4.16
15	I5_SR1	SilentIntronRegion	0	0.91	1.37	1.31	1.07	8.60	1.54	1.91
16	I5_AR1	ActiveIntronRegion	0	0.94	1.21	0.61	0.00	9.48	0.00	0.67
17	I5_AR5	ActiveIntronRegion	0	1.95	0.13	0.83	0.54	9.33	1.06	2.20
18	I5_AR6	ActiveIntronRegion	0	2.60	1.37	1.56	1.69	7.95	1.89	1.38
19	I5_SR4	SilentIntronRegion	0	1.09	0.81	0.51	2.76	7.97	0.00	1.25
20	I5_AR7	ActiveIntronRegion	0	2.03	2.12	1.72	1.45	13.72	1.62	2.86
21	E6_Aa	NovelBoundary	0	343.20	1430.09	382.42	1908.76	329.06	2515.21	667.77
22	ER6a	ExonRegion	0	0.89	0.00	0.33	0.31	2.06	0.02	1.37
23	E6_Da	NovelBoundary	0	9.81	59.32	3.56	75.31	8.30	86.56	1.22
24	E6a_E7a	KnownJunction	0	0.00	0.00	0.62	0.00	0.00	0.00	0.00
25	Ix	Intron	0	6.77	16.22	5.60	14.29	1.15	21.83	1.57
26	Ix_AR1	ActiveIntronRegion	0	1.53	8.62	2.17	4.78	1.63	5.88	0.36
27	Ix_SR1	SilentIntronRegion	0	15.72	29.30	11.48	30.59	0.34	49.10	3.64
28	E7_Aa	NovelBoundary	0	19.79	147.33	37.66	193.13	269.16	186.26	28.12
29	ER7a	ExonRegion	0	2.96	7.59	3.02	5.08	3.24	3.67	0.37
30	E7_Da	NovelBoundary	0	37.44	154.19	43.57	65.61	3.39	75.79	19.49
31	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	Ix	Intron	0	0.81	8.68	1.26	1.97	0.64	1.90	0.81
33	Ix_SR1	SilentIntronRegion	0	0.81	8.76	1.27	1.99	0.64	1.92	0.81
34	E8_Aa	NovelBoundary	0	1068.29	6804.43	844.79	5771.60	736.98	8524.15	1988.34
35	ER8a	ExonRegion	0	0.00	0.31	0.06	0.23	0.00	0.29	0.03
36	E8_Da	NovelBoundary	0	2041.43	9780.30	1774.51	9184.97	1203.06	13413.79	3591.64
37	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	Ix	Intron	0	8.80	45.53	6.40	29.56	2.41	31.49	1.03
39	Ix_AR1	ActiveIntronRegion	0	6.63	42.32	5.43	25.59	2.79	28.56	1.17
40	Ix_SR1	SilentIntronRegion	0	11.04	49.47	7.44	33.95	2.09	34.92	0.93
41	E9_Aa	NovelBoundary	0	7.54	36.60	7.24	22.95	4.15	41.54	1.07
42	ER9a	ExonRegion	0	6.47	25.85	4.09	27.29	2.73	23.62	1.34
43	E9_Da	NovelBoundary	0	3.81	31.03	5.83	74.12	4.36	34.84	0.85
44	E9a_E10a	KnownJunction	0	3.69	0.00	0.62	0.00	3.07	0.00	1.53
45	E10_Aa	NovelBoundary	0	2696.76	9407.62	1236.84	4946.59	323.45	5925.62	1332.31
46	ER10a	ExonRegion	0	2.48	9.42	1.90	7.07	2.08	8.47	0.84
47	E10_Da	NovelBoundary	0	58.95	133.14	25.46	86.10	0.00	118.86	13.51
48	E10a_E11a	KnownJunction	0	0.97	0.00	0.00	0.00	0.00	0.00	0.00
49	I10_AR1	ActiveIntronRegion	0	1.50	1.18	1.64	1.21	10.62	1.15	4.83
50	ER11a	ExonRegion	0	0.68	0.46	0.17	0.47	1.07	1.38	0.68
51	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	1.06	0.00	0.77
52	ER12a	ExonRegion	0	1.25	0.96	0.53	0.99	1.28	0.49	1.38