Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HLA-J	Gene	0	4.84	39.69	3.94	47.55	2.13	46.42	0.61
2	383614	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.98	0.00
3	376792	Transcript	0	2.73	28.47	2.41	25.82	1.87	30.12	0.51
4	376791	Transcript	0	3.62	54.01	1.91	49.28	1.15	71.74	0.00
5	376793	Transcript	0	18.11	144.36	9.99	63.03	8.84	81.28	7.26
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00
7	ER1b	ExonRegion	0	0.00	0.55	0.00	0.68	0.00	2.90	0.00
8	ER1c	ExonRegion	0	0.21	5.43	0.00	5.78	0.00	5.74	0.00
9	E1_Da	NovelBoundary	0	359.07	5097.68	235.39	3557.55	4.47	3409.31	492.26
10	E1_Db	NovelBoundary	1	0.67	19.83	1.93	2.98	0.00	11.20	0.00
11	E1b_E2a	KnownJunction	0	1.03	8.22	1.45	6.99	0.00	5.15	0.00
12	E1b_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER1d	ExonRegion	0	0.77	7.29	0.00	7.48	0.00	7.36	0.00
14	ER1e	ExonRegion	0	0.77	8.10	0.49	7.41	0.00	7.49	0.00
15	E2_Aa	NovelBoundary	1	1.55	34.05	1.65	11.27	0.00	22.16	3.54
16	ER2a	ExonRegion	0	0.35	9.83	0.16	12.87	0.31	14.94	0.00
17	E2_Da	NovelBoundary	0	4.79	21.33	1.70	12.06	0.97	20.18	0.75
18	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E2a_E4a	KnownJunction	0	0.00	26.38	0.00	24.35	0.00	29.24	0.00
20	E3_Aa	NovelBoundary	0	5.17	16.00	3.59	20.97	5.33	17.04	0.66
21	ER3a	ExonRegion	0	2.84	22.29	2.61	22.50	0.72	16.16	0.00
22	E3_Da	NovelBoundary	0	2.82	28.50	2.44	29.94	2.35	23.32	2.45
23	E3a_E4a	KnownJunction	1	51.49	410.78	27.36	166.58	25.80	227.69	21.78
24	E3a_E4b	NovelJunction	0	40.72	101.70	15.35	60.39	5.62	70.54	28.52
25	Ix	Intron	0	8.80	45.53	6.40	29.56	2.41	31.49	1.03
26	Ix_SR1	SilentIntronRegion	0	11.04	49.47	7.44	33.95	2.09	34.92	0.93
27	Ix_AR1	ActiveIntronRegion	0	6.63	42.32	5.43	25.59	2.79	28.56	1.17
28	E4_Aa	NovelBoundary	0	4.22	22.54	4.77	17.72	0.00	19.03	0.00
29	ER4a	ExonRegion	0	2.31	31.59	0.00	29.30	1.21	32.49	0.00
30	ER4b	ExonRegion	0	2.75	22.07	0.64	22.34	0.83	23.02	0.02
31	E4_Da	KnownBoundary	0	1.03	15.97	0.89	21.29	1.06	25.89	0.00
32	E4_Db	KnownBoundary	0	3.69	26.85	0.65	40.88	0.00	43.82	0.66
33	ER4c	ExonRegion	0	3.95	24.04	1.35	26.19	0.81	33.80	0.67
34	ER4d	ExonRegion	0	7.60	83.21	4.02	84.29	2.34	87.71	0.42
35	E4c_E5a	KnownJunction	0	1.64	27.06	3.71	29.69	0.00	28.73	0.00
36	E4c_E6a	KnownJunction	0	3.62	54.01	1.91	49.28	1.15	71.74	0.00
37	ER5a	ExonRegion	0	3.55	25.98	2.62	20.93	2.35	24.81	0.00
38	E5a_E6a	KnownJunction	0	3.02	32.37	0.89	26.85	3.27	36.82	1.52
39	Ix	Intron	0	0.81	8.68	1.26	1.97	0.64	1.90	0.81
40	Ix_SR1	SilentIntronRegion	0	0.81	8.76	1.27	1.99	0.64	1.92	0.81
41	E6_Aa	NovelBoundary	0	67.48	216.79	73.46	284.73	8.05	349.01	17.96
42	ER6a	ExonRegion	0	7.61	52.91	5.30	65.15	2.78	70.80	0.00
43	E6a_E7a	KnownJunction	0	2.90	20.47	4.80	27.36	2.35	34.95	0.00
44	Ix	Intron	0	6.77	16.22	5.60	14.29	1.15	21.83	1.57
45	Ix_SR1	SilentIntronRegion	0	15.72	29.30	11.48	30.59	0.34	49.10	3.64
46	Ix_AR1	ActiveIntronRegion	0	1.53	8.62	2.17	4.78	1.63	5.88	0.36
47	E7_Aa	NovelBoundary	0	4.66	43.45	7.42	30.50	3.92	48.45	3.98
48	ER7a	ExonRegion	0	8.20	56.05	8.32	80.33	4.44	73.67	2.07