Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RDBP	Gene	0	94.94	300.83	138.13	316.36	203.84	237.74	222.85
2	375429	Transcript	0	68.18	232.63	108.89	218.00	146.70	181.84	168.05
3	375425	Transcript	0	40.69	140.96	69.33	162.17	90.94	127.81	86.90
4	ER1a	ExonRegion	0	1.83	2.99	1.96	5.16	0.21	1.29	1.05
5	E1_Ab	KnownBoundary	0	14.14	7.70	7.98	9.70	2.03	3.89	2.35
6	ER1b	ExonRegion	0	24.54	73.07	23.26	86.46	36.59	57.11	40.12
7	E1_Da	NovelBoundary	1	25.89	5.81	9.74	6.15	0.00	3.16	0.00
8	E1a_E2a	KnownJunction	0	44.04	93.82	37.98	125.70	56.94	84.39	105.57
9	ER2a	ExonRegion	0	29.77	125.03	39.24	130.33	52.09	98.30	71.57
10	E2a_E3a	KnownJunction	0	32.70	186.11	56.73	189.56	65.72	138.61	75.91
11	I2	Intron	1	32.44	4.57	8.06	1.12	0.40	2.27	1.52
12	I2_SR1	SilentIntronRegion	1	39.64	5.44	9.23	1.59	0.43	2.53	1.32
13	I2_SR2	SilentIntronRegion	1	43.07	5.02	11.51	0.00	0.44	3.03	3.31
14	E3_Aa	NovelBoundary	1	66.18	12.93	19.76	1.14	0.00	2.73	0.72
15	ER3a	ExonRegion	0	100.06	342.14	129.51	311.95	146.02	227.83	229.36
16	E3_Da	NovelBoundary	1	60.07	7.72	16.93	0.00	0.00	10.21	0.69
17	E3a_E4a	KnownJunction	0	159.77	430.64	204.12	380.74	272.97	294.69	366.77
18	E4_Aa	NovelBoundary	1	45.10	9.64	19.67	6.18	0.00	5.57	1.75
19	ER4a	ExonRegion	0	153.06	485.25	240.31	458.13	270.06	355.11	332.05
20	E4_Da	NovelBoundary	1	57.46	6.25	25.19	0.00	0.00	1.66	0.89
21	E4a_E5a	KnownJunction	0	170.39	540.77	263.68	519.63	272.51	433.67	327.04
22	I4	Intron	1	26.83	2.39	11.54	1.98	0.32	2.67	0.27
23	I4_SR1	SilentIntronRegion	1	28.29	3.39	13.53	1.75	0.37	3.42	0.47
24	I4_SR2	SilentIntronRegion	1	25.16	1.08	9.01	2.30	0.25	1.69	0.00
25	E5_Aa	NovelBoundary	1	37.59	6.20	17.04	7.75	0.00	3.32	2.29
26	ER5a	ExonRegion	0	175.47	544.64	323.57	545.45	312.70	429.03	417.79
27	E5_Da	NovelBoundary	1	34.75	2.92	9.71	0.00	0.00	2.44	0.00
28	E5a_E6a	KnownJunction	0	127.28	399.93	280.49	423.14	312.97	385.57	373.19
29	I5	Intron	1	26.61	2.27	14.15	0.00	0.34	3.00	0.42
30	I5_SR1	SilentIntronRegion	1	27.25	2.33	14.48	0.00	0.35	3.07	0.43
31	ER6a	ExonRegion	0	122.91	471.27	284.64	474.67	277.25	392.74	362.95
32	E6a_E7a	KnownJunction	0	74.82	317.81	156.25	288.68	223.57	249.64	229.45
33	E6a_E7b	KnownJunction	1	14.17	68.12	41.73	79.92	39.74	54.30	19.82
34	I6	Intron	1	27.68	11.08	14.55	2.85	0.75	5.05	1.24
35	I6_AR1	ActiveIntronRegion	1	28.00	11.19	14.71	2.89	0.76	5.09	1.25
36	E7_Ab	NovelBoundary	0	74.20	284.10	116.63	218.11	98.32	212.92	168.48
37	ER7a	ExonRegion	0	98.07	387.77	194.24	347.28	203.98	294.70	290.16
38	ER7b	ExonRegion	0	121.01	399.26	180.90	375.44	285.89	314.60	273.58
39	E7_Da	KnownBoundary	0	135.99	376.57	205.04	407.53	348.24	355.58	306.53
40	E7a_E7c	KnownJunction	0	67.21	213.80	96.93	244.42	142.14	201.32	153.98
41	ER7c	ExonRegion	0	137.34	429.64	175.39	434.27	287.52	339.23	305.02
42	E7_Db	NovelBoundary	1	50.59	19.68	23.96	8.29	2.93	1.63	7.02
43	E7b_E8a	KnownJunction	0	67.46	467.37	125.12	465.99	313.68	318.17	311.67
44	ER7d	ExonRegion	0	80.97	423.90	119.97	437.45	260.38	297.69	269.66
45	I7	Intron	1	32.66	5.77	9.68	2.54	2.57	4.12	3.62
46	I7_SR1	SilentIntronRegion	1	36.86	6.19	9.71	3.29	3.84	4.38	3.43
47	I7_AR1	ActiveIntronRegion	1	43.84	8.50	13.83	3.08	2.39	6.13	5.22
48	E8_Aa	NovelBoundary	1	87.64	25.43	24.39	8.10	6.36	4.18	4.41
49	ER8a	ExonRegion	0	169.56	538.28	236.13	607.37	408.95	427.89	431.54
50	E8_Da	NovelBoundary	1	44.88	14.90	16.58	3.36	2.24	1.29	1.68
51	E8a_E9a	KnownJunction	0	69.21	405.21	121.56	455.35	286.15	299.73	258.01
52	I8	Intron	1	34.59	7.31	13.84	2.31	0.00	2.29	0.31
53	I8_SR1	SilentIntronRegion	1	35.22	2.96	12.63	2.03	0.00	2.66	0.42
54	I8_SR2	SilentIntronRegion	1	33.75	11.52	14.98	2.54	0.00	1.91	0.20
55	E9_Aa	NovelBoundary	1	36.68	8.22	14.20	1.49	0.00	1.53	2.44
56	ER9a	ExonRegion	0	84.99	372.25	138.16	448.18	374.09	273.87	310.57
57	E9_Da	NovelBoundary	1	95.68	56.83	58.83	64.88	6.04	80.72	8.21
58	E9a_E10a	KnownJunction	0	118.30	327.00	165.53	423.24	365.16	266.20	350.49
59	I9	Intron	0	36.46	65.33	35.06	67.83	5.79	71.98	9.47
60	I9_AR1	ActiveIntronRegion	0	36.73	65.78	35.32	68.34	5.84	72.52	9.54
61	E10_Aa	NovelBoundary	1	41.69	59.90	31.89	80.46	8.97	80.16	5.02
62	ER10a	ExonRegion	0	101.18	306.53	149.64	428.85	251.19	294.16	289.32
63	E10a_E11a	KnownJunction	0	42.56	240.88	60.30	300.85	115.20	205.07	147.79
64	ER11a	ExonRegion	0	66.36	158.74	73.16	199.01	142.35	142.10	122.78
65	E11_Da	KnownBoundary	1	37.34	38.62	15.79	31.51	4.84	45.61	16.41
66	ER11b	ExonRegion	1	28.86	24.93	16.60	14.60	18.25	24.34	14.57