Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SHROOM1	Gene	0	18.88	11.72	11.79	6.78	10.96	16.93	21.00
2	355404	Transcript	0	0	0	0	0	0	0	0
3	378679	Transcript	0	8.50	9.66	5.88	3.12	4.23	23.79	11.24
4	319854	Transcript	0	0.70	3.24	1.53	0.03	1.42	0.00	1.48
5	378676	Transcript	0	2.20	2.63	0.00	1.54	0.95	4.66	5.32
6	ER1a	ExonRegion	0	1.25	0.00	0.72	0.12	0.29	0.44	1.04
7	E1a_E2a	KnownJunction	0	2.74	0.00	1.29	1.65	0.00	2.57	3.21
8	I1	Intron	0	11.53	3.31	6.06	2.33	3.85	1.58	3.48
9	I1_AR2	ActiveIntronRegion	0	11.58	3.33	6.09	2.34	3.87	1.59	3.50
10	E2_Aa	NovelBoundary	1	110.55	81.31	60.67	63.26	8.44	68.90	41.88
11	ER2a	ExonRegion	1	21.85	5.58	10.88	8.62	28.58	9.60	5.07
12	E2_Da	NovelBoundary	1	311.65	177.88	216.92	152.50	108.28	129.84	108.02
13	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2a_E3c	NovelJunction	0	14.17	2.86	8.74	1.38	1.89	7.16	7.82
15	ER3a	ExonRegion	0	6.48	3.82	2.10	0.79	2.51	0.00	2.66
16	E3_Ab	KnownBoundary	0	11.18	2.73	2.62	1.54	1.06	0.00	4.10
17	ER3b	ExonRegion	1	10.62	3.09	2.46	2.34	2.31	0.00	3.17
18	E3_Da	KnownBoundary	0	0.75	1.16	0.00	0.00	0.00	0.00	0.89
19	E3a_E3c	KnownJunction	0	8.60	1.63	1.77	2.90	3.07	0.00	1.10
20	ER3c	ExonRegion	0	0.70	3.24	1.53	0.03	1.42	0.00	1.48
21	E3_Ac	KnownBoundary	0	0.80	2.71	0.63	0.00	3.41	0.00	1.72
22	ER3d	ExonRegion	0	5.91	7.32	3.74	3.56	3.91	2.22	9.56
23	E3_Ad	KnownBoundary	1	6.76	9.33	8.13	4.58	2.31	7.26	15.64
24	ER3e	ExonRegion	0	12.83	12.91	9.41	5.40	5.41	20.25	15.64
25	E3_Db	NovelBoundary	1	3.20	15.05	2.16	4.63	0.00	10.61	10.00
26	E3b_E4a	KnownJunction	0	77.89	30.69	56.09	25.33	45.37	35.88	75.54
27	I3	Intron	0	0.44	1.04	1.14	2.09	3.24	8.38	2.83
28	I3_AR1	ActiveIntronRegion	1	0.22	1.11	1.16	2.08	2.43	8.28	2.79
29	I3_AR2	ActiveIntronRegion	1	0.77	1.21	1.35	2.49	5.67	9.81	3.37
30	I3_AR3	ActiveIntronRegion	1	0.67	0.95	1.08	2.03	3.80	8.58	2.85
31	E4_Aa	NovelBoundary	1	40.46	6.96	26.97	3.31	3.39	8.07	8.68
32	ER4a	ExonRegion	0	102.70	31.35	60.21	23.29	25.29	42.56	79.88
33	E4_Da	NovelBoundary	1	4.09	9.20	2.07	2.93	3.04	13.05	10.89
34	E4a_E5a	KnownJunction	0	92.36	27.09	60.18	13.76	12.40	40.63	60.91
35	E4a_E6a	KnownJunction	0	2.20	2.63	0.00	1.54	0.95	4.66	5.32
36	E5_Aa	NovelBoundary	1	33.58	1.47	25.69	1.00	2.26	5.25	7.01
37	ER5a	ExonRegion	0	63.41	15.77	43.60	16.81	28.63	36.56	60.91
38	E5a_E6a	KnownJunction	0	48.35	12.72	34.55	9.45	22.27	23.42	57.70
39	E6_Aa	NovelBoundary	1	24.53	1.05	14.83	2.49	0.00	4.98	8.58
40	ER6a	ExonRegion	0	38.76	17.78	21.23	11.76	17.08	24.60	52.83
41	E6a_E7a	KnownJunction	0	17.77	17.10	8.46	5.74	6.66	12.62	19.63
42	ER7a	ExonRegion	0	17.46	19.52	12.34	6.53	6.64	21.95	19.56
43	E7a_E8a	KnownJunction	0	20.29	17.16	10.58	6.47	10.49	14.85	23.35
44	ER8a	ExonRegion	0	11.32	14.30	6.24	6.48	8.14	11.37	12.94
45	E8a_E9a	KnownJunction	0	8.14	15.82	3.75	4.88	9.22	5.55	15.21
46	E8a_E9b	KnownJunction	0	1.62	0.00	0.00	0.00	0.92	0.00	0.00
47	E9_Ab	NovelBoundary	0	3.64	13.71	1.90	2.76	2.26	5.09	4.16
48	ER9a	ExonRegion	0	5.38	15.26	4.15	3.74	6.53	7.97	9.53
49	ER9b	ExonRegion	0	9.79	12.74	5.77	5.96	7.37	15.09	20.40
50	E9_Da	KnownBoundary	1	17.44	9.01	6.02	7.26	4.89	22.03	25.55
51	ER9c	ExonRegion	0	16.33	10.78	11.78	8.76	23.09	18.58	13.59
52	E9_Db	KnownBoundary	0	18.46	10.46	9.38	4.52	2.14	28.35	23.52
53	ER9d	ExonRegion	0	8.50	9.66	5.88	3.12	4.23	23.79	11.24