Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PAM	Gene	0	347.14	208.50	132.22	136.17	129.07	247.91	266.81
2	379799	Transcript	0	11.76	12.39	3.46	6.22	2.94	9.01	18.82
3	346918	Transcript	1	46.36	17.65	17.07	30.75	6.39	42.93	2.06
4	348126	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	304400	Transcript	0	86.27	58.07	27.29	44.30	41.34	80.45	112.13
6	345721	Transcript	1	63.07	12.19	17.65	22.13	43.11	34.36	44.44
7	379787	Transcript	0	15.95	21.36	12.31	15.79	3.85	50.27	10.34
8	274392	Transcript	0	13.00	12.83	8.72	7.12	9.45	5.86	16.92
9	IG30_AR14	ActiveIntergenicRegion	0	0.00	0.00	0.08	0.30	7.96	0.66	0.00
10	IG30_SR20	SilentIntergenicRegion	0	3.44	9.60	1.70	3.48	0.13	0.33	0.46
11	IG30_AR36	ActiveIntergenicRegion	0	1.62	9.46	1.75	2.11	1.99	4.90	2.52
12	ER1a	ExonRegion	0	23.21	24.30	5.55	9.98	5.83	15.45	37.51
13	ER1b	ExonRegion	0	36.85	95.23	12.44	51.83	14.29	74.01	53.71
14	E1_Ac	KnownBoundary	0	27.45	94.94	14.24	54.34	12.96	101.30	40.50
15	ER1c	ExonRegion	0	180.59	205.98	57.66	116.19	39.51	185.03	119.74
16	E1_Da	NovelBoundary	1	2.57	61.34	3.49	3.93	0.00	13.43	0.00
17	E1a_E2a	KnownJunction	0	478.35	365.83	157.57	212.26	117.57	416.74	349.39
18	ER2a	ExonRegion	0	634.34	370.59	223.93	228.53	160.93	398.70	386.42
19	E2a_E3a	KnownJunction	0	572.80	270.94	185.64	178.53	188.18	258.03	347.21
20	E2a_E4a	NovelJunction	0	11.68	49.52	15.58	35.30	5.65	51.05	10.06
21	ER3a	ExonRegion	0	676.56	407.35	223.68	270.40	171.12	396.50	484.51
22	E3a_E4a	KnownJunction	0	650.16	448.19	225.50	289.28	148.92	457.95	481.64
23	ER4a	ExonRegion	0	715.68	500.71	255.83	287.14	186.93	430.65	440.19
24	E4a_E5a	KnownJunction	0	850.20	491.20	279.98	292.99	213.86	446.32	479.54
25	ER5a	ExonRegion	0	835.94	403.80	280.67	260.05	241.15	393.64	459.76
26	E5a_E6a	KnownJunction	0	592.99	328.39	240.96	203.67	185.32	304.26	345.85
27	ER6a	ExonRegion	0	673.36	345.14	267.33	183.81	190.32	336.76	405.47
28	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER7a	ExonRegion	0	673.34	379.43	276.83	225.42	261.19	391.82	501.18
30	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER8a	ExonRegion	0	632.57	461.99	255.58	253.15	214.00	428.20	503.29
32	E8a_E9a	KnownJunction	0	719.24	499.31	263.78	249.73	244.20	404.25	477.02
33	ER9a	ExonRegion	0	698.78	470.22	271.67	250.56	280.62	392.20	555.39
34	E9_Da	NovelBoundary	1	268.06	1.42	111.26	0.00	0.00	0.00	0.82
35	E9a_E10a	KnownJunction	0	717.02	479.80	276.84	266.20	340.91	446.62	639.02
36	ER10a	ExonRegion	0	640.11	453.66	225.44	266.23	326.46	409.31	624.46
37	E10a_E11a	KnownJunction	0	660.14	443.78	216.35	261.35	278.25	362.39	556.45
38	ER11a	ExonRegion	0	687.60	459.17	241.46	294.88	260.40	427.57	577.65
39	E11a_E12a	KnownJunction	0	810.23	469.29	264.00	313.25	348.12	460.13	670.17
40	ER12a	ExonRegion	0	893.31	453.40	304.72	280.91	340.03	432.27	622.63
41	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER13a	ExonRegion	0	961.04	382.14	323.30	247.73	323.82	352.76	506.51
43	E13a_E14a	KnownJunction	0	301.37	130.73	122.88	80.27	143.04	170.77	157.65
44	E13a_E15a	KnownJunction	1	13.82	16.92	9.47	10.02	11.87	3.75	18.24
45	E13a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER14a	ExonRegion	0	276.29	140.81	127.78	100.39	111.16	244.52	190.69
47	E14a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER15a	ExonRegion	0	25.17	21.57	16.68	11.34	16.47	13.83	32.53
49	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER16a	ExonRegion	0	625.81	227.94	215.88	170.93	174.00	238.93	385.03
51	E16a_E17a	KnownJunction	0	652.79	237.86	240.13	172.35	235.44	239.03	447.77
52	ER17a	ExonRegion	0	512.47	258.83	212.19	183.54	202.56	285.82	439.38
53	E17a_E18a	KnownJunction	0	441.05	265.89	185.68	157.26	171.77	249.85	351.56
54	E17a_E19a	NovelJunction	0	4.02	1.08	1.95	1.54	0.00	10.10	0.00
55	ER18a	ExonRegion	0	430.15	283.84	192.35	181.51	177.10	292.04	403.24
56	E18a_E19a	KnownJunction	0	432.39	282.89	189.44	209.74	199.11	349.71	444.60
57	ER19a	ExonRegion	0	500.58	338.99	202.17	215.58	224.78	356.23	417.68
58	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	ER20a	ExonRegion	0	582.13	337.23	212.16	223.98	236.99	381.58	461.07
60	E20a_E21a	KnownJunction	0	415.38	277.53	179.53	182.86	194.01	364.72	413.58
61	ER21a	ExonRegion	0	388.65	280.45	169.75	190.95	172.77	357.59	424.99
62	E21a_E22a	KnownJunction	0	373.54	309.87	164.63	205.78	169.14	397.68	491.37
63	E21a_E23a	NovelJunction	0	12.73	5.99	4.47	10.24	0.97	10.53	0.00
64	ER22a	ExonRegion	0	337.62	299.90	169.44	199.80	171.19	421.64	494.07
65	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	ER23a	ExonRegion	0	359.41	281.60	175.18	214.99	132.26	376.74	437.20
67	E23a_E24a	KnownJunction	0	233.02	171.84	97.06	107.74	67.52	238.14	321.73
68	E23a_E26a	NovelJunction	0	65.46	38.80	25.42	46.14	57.31	39.99	56.41
69	E23a_E26b	KnownJunction	1	63.07	12.19	17.65	22.13	43.11	34.36	44.44
70	E23a_E27a	KnownJunction	1	46.36	17.65	17.07	30.75	6.39	42.93	2.06
71	ER24a	ExonRegion	0	182.96	171.13	74.79	100.21	84.64	254.73	257.86
72	E24a_E26a	KnownJunction	1	55.74	34.44	12.76	28.12	28.22	56.39	71.80
73	E24a_E26b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	E24a_E27a	NovelJunction	0	37.29	40.77	22.65	30.97	10.58	93.42	20.92
75	E24b_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
76	ER24b	ExonRegion	1	24.01	32.50	18.63	23.69	5.87	76.01	15.52
77	ER25a	ExonRegion	1	23.82	31.59	18.29	23.69	5.67	74.79	15.52
78	ER26a	ExonRegion	0	116.80	81.70	41.83	60.48	54.46	104.52	152.46
79	ER26b	ExonRegion	0	305.87	212.53	118.08	129.73	157.65	255.84	343.61
80	E26a_E27a	KnownJunction	0	260.95	189.02	111.67	118.33	203.19	248.54	300.70
81	E27_Ab	NovelBoundary	0	165.20	104.80	63.53	72.25	69.64	149.54	102.81
82	ER27a	ExonRegion	0	362.57	262.61	143.72	155.66	200.17	328.77	325.94
83	ER27b	ExonRegion	0	454.31	322.74	179.88	223.26	214.07	432.30	379.12
84	E27_Da	KnownBoundary	0	573.73	330.84	227.50	232.96	219.67	519.67	425.50
85	ER27c	ExonRegion	0	638.28	305.01	241.66	240.83	236.45	551.55	443.32
86	E27_Db	KnownBoundary	0	340.39	183.79	116.63	157.67	134.97	391.38	196.33
87	ER27d	ExonRegion	0	150.54	83.62	56.88	53.10	47.52	180.94	90.65
88	E27_Dc	KnownBoundary	0	5.99	0.00	2.17	6.07	0.00	2.20	0.53
89	ER27e	ExonRegion	0	0.31	0.48	1.37	2.46	0.05	2.57	0.13