Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EPB41L4A	Gene	0	27.86	17.24	21.01	22.45	44.29	32.50	75.48
2	261486	Transcript	0	27.38	15.23	22.75	22.74	50.21	35.59	76.37
3	359109	Transcript	0	0.20	0.00	0.41	0.00	0.06	0.00	0.11
4	ER1a	ExonRegion	1	11.89	4.82	4.84	1.87	6.13	11.70	16.78
5	E1a_E2a	KnownJunction	0	25.69	11.45	10.79	6.01	14.27	6.78	45.76
6	ER2a	ExonRegion	0	23.87	8.18	12.10	7.97	23.42	11.33	48.49
7	E2a_E3a	KnownJunction	0	25.07	6.44	12.99	7.34	21.60	9.33	47.51
8	ER3a	ExonRegion	1	26.64	2.20	11.96	9.35	20.36	15.61	53.84
9	E3a_E4a	KnownJunction	1	23.30	2.57	11.86	7.53	24.04	16.75	47.75
10	ER4a	ExonRegion	1	19.76	1.31	10.72	6.46	19.27	13.90	54.91
11	E4a_E5a	KnownJunction	1	12.63	1.13	10.59	2.38	14.85	20.31	37.73
12	ER5a	ExonRegion	1	11.46	4.56	9.73	3.86	19.63	19.92	36.19
13	E5a_E6a	KnownJunction	1	18.14	6.70	10.68	3.12	23.17	17.74	44.89
14	ER6a	ExonRegion	1	15.95	4.03	10.41	4.02	11.62	15.92	45.34
15	E6a_E7a	KnownJunction	1	6.01	5.33	12.00	2.82	14.22	16.78	42.52
16	ER7a	ExonRegion	1	16.39	2.69	11.69	5.85	15.89	18.64	44.61
17	E7a_E8a	KnownJunction	0	23.87	2.44	11.96	3.98	10.95	13.86	47.81
18	ER8a	ExonRegion	1	20.23	1.39	12.56	3.01	17.33	14.92	53.30
19	E8a_E9a	KnownJunction	1	17.82	1.18	18.21	3.93	22.15	17.69	55.92
20	E8a_E10a	NovelJunction	1	1.37	0.00	0.60	0.00	0.00	9.94	0.80
21	ER9a	ExonRegion	1	26.32	4.01	15.28	6.72	20.16	18.12	60.46
22	E9a_E10a	KnownJunction	0	28.94	3.26	10.43	6.34	21.99	9.49	52.27
23	ER10a	ExonRegion	0	24.12	7.72	9.72	8.77	22.40	18.60	69.62
24	E10a_E11a	KnownJunction	1	15.40	2.10	10.86	6.83	14.29	26.91	76.33
25	ER11a	ExonRegion	0	16.73	6.35	9.74	7.80	20.23	17.62	71.75
26	E11a_E12a	KnownJunction	1	17.94	1.34	7.82	8.80	12.77	16.96	72.47
27	ER12a	ExonRegion	1	23.77	3.77	13.73	7.47	19.30	18.77	82.23
28	E12a_E13a	KnownJunction	1	23.25	1.00	18.72	7.26	23.95	19.16	70.05
29	ER13a	ExonRegion	1	32.93	3.50	21.78	8.19	24.14	18.87	86.99
30	E13a_E14a	KnownJunction	0	34.65	6.62	21.05	7.37	21.35	21.23	87.39
31	E14_Aa	NovelBoundary	1	10.51	0.00	9.83	0.00	0.00	1.31	0.00
32	ER14a	ExonRegion	1	34.05	6.26	20.69	3.01	21.38	20.05	87.54
33	E14a_E15a	KnownJunction	0	30.83	7.25	20.82	4.06	17.75	11.66	73.02
34	ER15a	ExonRegion	0	23.72	6.91	15.36	5.80	19.88	14.44	70.25
35	E15a_E16a	KnownJunction	1	27.37	6.28	10.82	0.00	34.86	9.00	58.34
36	ER16a	ExonRegion	0	37.75	7.49	14.70	5.12	32.60	13.31	79.46
37	E16a_E17a	KnownJunction	0	33.35	5.44	14.07	9.32	29.44	17.77	80.49
38	ER17a	ExonRegion	0	21.57	6.07	10.65	9.29	17.89	19.60	77.53
39	E17a_E18a	KnownJunction	0	11.45	8.41	8.68	5.47	8.76	13.35	36.03
40	I17_SR2	SilentIntronRegion	1	0.40	0.87	0.94	2.31	0.12	9.14	0.32
41	ER18a	ExonRegion	1	28.17	9.98	11.92	7.25	16.97	28.10	68.30
42	E18a_E19a	KnownJunction	1	15.04	7.49	8.49	2.76	28.98	20.80	64.22
43	I18	Intron	0	1.15	1.09	1.54	3.33	0.38	8.90	1.15
44	I18_SR1	SilentIntronRegion	1	1.24	0.00	0.26	3.01	0.21	7.96	2.67
45	I18_AR2	ActiveIntronRegion	1	1.63	0.00	0.00	3.69	0.00	13.39	0.67
46	I18_SR2	SilentIntronRegion	1	0.59	0.00	0.15	4.37	0.00	16.19	0.12
47	I18_AR3	ActiveIntronRegion	0	0.15	1.87	0.83	2.74	0.31	9.72	0.22
48	I18_AR5	ActiveIntronRegion	1	1.99	1.35	4.48	4.80	0.12	14.98	0.67
49	I18_SR4	SilentIntronRegion	1	1.58	1.68	1.80	3.66	0.52	10.57	0.99
50	I18_SR5	SilentIntronRegion	0	1.18	1.19	1.87	2.67	0.66	7.94	1.63
51	ER19a	ExonRegion	1	14.68	9.29	10.10	2.23	17.80	21.91	63.03
52	E19a_E20a	KnownJunction	1	10.50	10.32	12.21	1.68	13.88	18.95	53.71
53	E20_Aa	NovelBoundary	1	0.00	0.00	5.20	4.52	0.00	9.67	0.00
54	ER20a	ExonRegion	1	16.89	8.68	14.60	3.02	24.85	21.78	75.29
55	E20a_E21a	KnownJunction	1	22.15	3.86	11.84	6.34	28.54	20.48	79.61
56	ER21a	ExonRegion	1	13.07	3.33	10.91	7.03	14.90	18.50	57.07
57	E21_Da	NovelBoundary	1	0.68	0.00	1.58	0.00	0.88	9.19	2.06
58	E21a_E22a	KnownJunction	1	11.95	1.21	10.78	1.06	15.35	12.22	55.43
59	ER22a	ExonRegion	1	16.07	2.95	11.01	3.62	21.61	15.92	64.67
60	E22a_E23a	KnownJunction	1	17.82	1.18	14.43	6.12	28.70	22.30	53.81
61	E22a_E24a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	I22	Intron	0	2.57	2.84	4.61	6.60	3.57	12.25	3.51
63	I22_SR1	SilentIntronRegion	0	2.39	2.68	2.81	4.94	2.28	11.83	2.13
64	I22_AR2	ActiveIntronRegion	0	1.38	3.83	3.93	6.27	3.29	10.35	2.92
65	I22_SR2	SilentIntronRegion	0	3.18	3.79	5.62	6.55	4.15	8.16	3.99
66	I22_AR3	ActiveIntronRegion	1	3.70	2.39	6.86	9.28	5.12	15.81	5.31
67	ER23a	ExonRegion	0	36.94	29.28	31.08	39.35	71.71	48.88	98.92
68	E23_Da	NovelBoundary	0	19.38	38.07	24.67	55.21	79.21	44.89	45.42
69	I23	Intron	1	20.60	112.71	22.99	82.63	58.49	129.44	59.70
70	I23_AR1	ActiveIntronRegion	0	22.41	69.99	24.35	51.89	55.37	83.57	45.92
71	I23_SR1	SilentIntronRegion	0	7.61	11.72	10.82	8.06	22.80	16.04	16.43
72	I23_AR2	ActiveIntronRegion	1	35.38	245.91	39.66	179.72	107.88	278.82	120.41
73	ER24a	ExonRegion	0	0.00	0.00	0.00	0.00	0.04	0.00	0.00
74	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
75	ER25a	ExonRegion	0	0.46	0.00	1.73	0.00	0.35	0.00	0.00
76	E25a_E26a	KnownJunction	0	0.62	0.00	0.75	0.00	0.00	0.00	0.64
77	ER26a	ExonRegion	0	0.10	0.00	0.00	0.00	0.00	0.00	0.00