Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 LNPEP Gene 0 32.46 18.13 41.53 15.74 5.87 9.90 38.16 2 395784 Transcript 0 2.57 1.95 4.16 3.88 0.80 2.04 2.40 3 231368 Transcript 0 0 0 0 0 0 0 0 4 379870 Transcript 0 0 0 0 0 0 0 0 5 395770 Transcript 0 0.24 2.37 0.08 0.29 0.13 0.00 0.16 6 IG44_AR2 ActiveIntergenicRegion 0 15.25 5.89 9.98 4.01 1.71 11.49 35.37 7 IG44_SR2 SilentIntergenicRegion 0 17.16 10.33 14.68 7.48 0.81 23.29 51.94 8 IG44_AR3 ActiveIntergenicRegion 0 24.20 8.11 15.34 4.44 0.92 18.58 37.47 9 ER1a ExonRegion 0 3.83 3.78 6.54 8.34 1.03 3.69 4.89 10 E1_Ab KnownBoundary 0 2.59 3.02 9.97 6.29 2.28 5.68 4.86 11 ER1b ExonRegion 0 3.54 4.45 6.47 4.38 1.60 5.85 3.64 12 E1_Da KnownBoundary 0 4.07 6.04 5.93 2.49 1.18 4.82 3.86 13 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER1c ExonRegion 0 4.43 2.67 5.75 3.59 0.77 3.12 2.57 15 E1_Ac KnownBoundary 0 3.00 2.71 6.54 1.30 0.85 0.00 0.83 16 ER1d ExonRegion 1 15.11 7.66 15.90 9.03 1.74 3.77 7.24 17 E1_Db KnownBoundary 0 0.72 1.63 2.53 2.93 1.08 1.37 0.00 18 E1b_E3a KnownJunction 1 31.54 24.35 28.83 10.38 1.15 10.64 14.22 19 ER1e ExonRegion 0 3.87 2.06 5.94 3.30 1.38 2.43 2.30 20 ER2a ExonRegion 0 0.48 1.18 0.16 0.58 0.26 0.00 0.32 21 E2a_E3a KnownJunction 0 0.00 3.55 0.00 0.00 0.00 0.00 0.00 22 ER3a ExonRegion 0 37.55 42.81 60.12 29.86 7.16 19.83 61.41 23 E3a_E4a KnownJunction 1 33.88 50.57 66.45 19.29 14.32 15.73 64.36 24 ER4a ExonRegion 0 41.38 39.88 62.52 26.76 7.10 16.43 65.21 25 E4a_E5a KnownJunction 0 25.05 34.31 63.78 20.91 2.35 19.14 55.20 26 ER5a ExonRegion 0 36.80 28.22 67.70 22.07 7.18 10.31 64.85 27 E5a_E6a KnownJunction 0 29.32 27.74 60.28 21.73 6.71 12.09 57.31 28 ER6a ExonRegion 0 37.23 23.69 72.79 19.47 6.53 11.44 62.36 29 E6a_E7a KnownJunction 0 37.50 15.89 63.04 24.49 3.64 6.81 57.11 30 ER7a ExonRegion 0 45.10 18.55 70.41 24.49 7.59 10.21 49.81 31 E7a_E8a KnownJunction 1 42.74 24.96 64.74 20.83 4.36 3.75 50.09 32 E8_Aa NovelBoundary 1 18.36 1.02 31.03 0.00 0.00 0.00 0.85 33 ER8a ExonRegion 0 53.39 27.44 74.61 25.96 11.10 11.34 49.39 34 E8a_E9a KnownJunction 0 65.52 31.42 79.97 18.15 18.26 14.47 40.07 35 ER9a ExonRegion 0 85.17 34.79 95.99 27.56 14.33 16.01 75.38 36 E9a_E10a KnownJunction 0 108.02 44.27 90.56 31.21 16.07 22.54 88.67 37 ER10a ExonRegion 0 93.22 36.51 95.76 25.38 12.74 16.23 88.46 38 E10a_E11a KnownJunction 0 91.28 24.06 80.33 25.60 10.56 11.52 89.89 39 ER11a ExonRegion 0 90.45 23.12 90.63 31.51 13.56 13.29 79.09 40 E11a_E12a KnownJunction 1 85.92 28.53 102.09 37.85 19.27 9.89 75.01 41 ER12a ExonRegion 0 96.11 35.37 101.67 42.30 12.11 12.91 81.24 42 E12a_E13a KnownJunction 1 78.94 32.16 82.36 37.25 15.68 10.48 77.46 43 I12_SR2 SilentIntronRegion 0 11.25 1.21 4.69 2.49 2.20 1.23 5.35 44 ER13a ExonRegion 0 66.64 34.23 82.28 27.36 12.71 15.76 82.34 45 E13a_E14a KnownJunction 0 43.99 21.17 63.60 21.43 9.75 18.17 77.45 46 ER14a ExonRegion 0 52.71 26.42 72.69 21.25 10.64 16.89 79.81 47 E14a_E15a KnownJunction 0 34.60 24.96 45.04 13.74 7.38 19.64 59.91 48 ER15a ExonRegion 0 44.16 23.20 58.08 18.02 11.43 18.24 72.02 49 E15a_E16a KnownJunction 0 53.51 27.01 63.06 15.31 13.81 9.46 60.65 50 ER16a ExonRegion 0 59.92 29.50 66.79 21.91 14.30 15.21 67.58 51 E16a_E17a KnownJunction 0 70.53 29.24 78.88 18.53 8.39 11.47 63.43 52 ER17a ExonRegion 0 63.93 22.20 71.13 25.05 12.53 8.02 63.01 53 E17a_E18a KnownJunction 0 60.97 26.67 67.51 22.27 12.17 9.00 63.93 54 ER18a ExonRegion 0 57.42 23.69 60.59 33.93 10.52 11.29 71.13 55 E18a_E19a KnownJunction 0 44.58 26.80 48.17 31.53 8.07 10.24 59.12 56 ER19a ExonRegion 0 44.86 18.06 50.50 15.56 6.62 13.25 47.07 57 IG45 Intergenic 0 37.70 12.72 47.52 9.65 12.67 9.46 64.10 58 IG45_AR1 ActiveIntergenicRegion 0 37.74 10.93 44.39 7.99 9.72 5.12 47.39 59 IG45_SR1 SilentIntergenicRegion 0 13.59 5.75 17.16 6.05 2.77 4.04 30.03 60 IG45_AR2 ActiveIntergenicRegion 0 37.98 13.72 49.49 10.53 14.28 11.72 72.99