Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NKD2	Gene	0	0.89	7.85	33.57	27.59	10.58	21.72	0.44
2	274150	Transcript	0	0.05	0.77	7.14	3.55	2.71	0.92	0.00
3	296849	Transcript	0	0.06	7.93	24.36	13.48	4.02	17.28	0.00
4	382730	Transcript	0	0.00	0.00	0.14	0.00	0.97	0.38	0.00
5	ER1a	ExonRegion	0	0.00	0.12	0.99	2.64	0.00	2.63	0.00
6	E1a_E2a	KnownJunction	0	0.00	1.58	6.47	1.46	1.98	4.58	0.00
7	ER1b	ExonRegion	0	0.00	1.84	4.67	3.31	0.87	5.62	0.00
8	ER2a	ExonRegion	0	0.00	3.64	9.28	5.75	2.90	8.31	0.00
9	E2a_E3a	KnownJunction	0	0.00	4.60	11.88	8.13	2.28	10.61	0.00
10	ER3a	ExonRegion	0	0.36	3.83	18.21	11.52	4.66	11.75	0.00
11	E3a_E4a	KnownJunction	0	1.03	5.07	28.44	16.34	4.10	11.12	0.00
12	ER4a	ExonRegion	0	1.02	8.70	34.10	21.89	5.75	21.57	0.00
13	E4a_E5a	KnownJunction	0	1.03	11.35	45.65	29.69	7.40	34.89	0.00
14	ER5a	ExonRegion	0	1.80	10.20	45.28	31.49	13.80	29.79	0.58
15	E5_Da	NovelBoundary	0	1.00	1.18	8.26	11.51	0.00	12.14	0.00
16	E5a_E6a	KnownJunction	0	1.03	6.88	57.02	40.34	11.92	28.73	0.89
17	I5	Intron	0	1.03	2.89	21.65	17.49	2.80	13.16	0.14
18	I5_SR1	SilentIntronRegion	0	0.99	3.09	22.87	18.20	2.96	14.16	0.16
19	I5_AR1	ActiveIntronRegion	0	1.33	1.83	15.38	14.15	1.89	7.82	0.00
20	E6_Aa	NovelBoundary	0	0.63	3.26	8.85	14.28	4.38	12.19	0.00
21	ER6a	ExonRegion	0	3.07	18.30	61.25	68.79	24.39	43.13	0.30
22	E6a_E7a	KnownJunction	0	1.02	14.37	71.49	77.83	31.56	56.49	0.00
23	ER7a	ExonRegion	0	3.15	17.59	85.59	78.55	27.90	50.22	1.01
24	E7a_E8a	KnownJunction	1	3.17	7.75	84.40	73.85	18.00	58.69	1.68
25	ER8a	ExonRegion	0	0.98	13.68	76.07	52.40	27.49	30.17	0.65
26	E8_Da	NovelBoundary	0	1.70	2.68	12.34	5.85	4.24	2.44	0.00
27	E8a_E9a	KnownJunction	0	0.00	11.19	77.41	15.41	24.09	12.97	0.00
28	E9_Aa	NovelBoundary	0	0.00	4.76	26.36	22.32	3.34	24.31	0.00
29	ER9a	ExonRegion	0	1.37	17.40	82.66	34.98	14.99	35.56	1.20
30	E9a_E11a	KnownJunction	0	0.00	0.00	11.54	2.65	2.33	0.00	0.00
31	E9a_E12a	KnownJunction	0	0.00	15.87	40.32	24.33	4.33	33.77	0.00
32	ER10a	ExonRegion	0	0.00	0.00	0.28	0.00	1.94	0.75	0.00
33	E10_Da	NovelBoundary	0	0.00	0.00	1.61	7.45	7.72	1.66	0.00
34	E10a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER11a	ExonRegion	0	0.22	1.34	11.56	5.56	5.14	1.04	0.00
36	E11a_E12a	KnownJunction	0	0.00	1.63	4.48	3.36	3.39	0.00	0.00
37	ER12a	ExonRegion	0	0.83	10.97	44.05	31.63	12.18	32.83	0.73
38	E12_Ab	KnownBoundary	0	0.75	17.10	21.51	31.86	13.74	21.90	0.00
39	ER12b	ExonRegion	0	0.48	5.58	11.67	29.26	7.13	18.83	0.42
40	E12_Da	KnownBoundary	0	0.78	5.52	19.85	13.49	3.27	16.05	0.00
41	ER12c	ExonRegion	0	0.48	1.89	26.63	9.28	4.87	10.97	0.60
42	E12_Db	KnownBoundary	0	0.85	0.00	11.67	9.29	2.28	2.41	0.00
43	ER12d	ExonRegion	0	0.13	0.00	8.41	2.64	3.71	0.80	0.00