Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PDZD2	Gene	0	16.20	5.84	17.93	44.24	9.78	29.50	12.17
2	382161	Transcript	0	0.24	0.26	0.32	0.71	0.16	0.53	0.28
3	282493	Transcript	0	5.88	3.48	7.67	23.93	3.33	12.20	5.96
4	397559	Transcript	0	3.31	1.62	3.32	2.63	2.59	6.62	1.95
5	ER1a	ExonRegion	0	0.15	1.15	0.92	12.69	1.95	14.43	0.00
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	19.97	0.00	19.91	0.00
7	ER2a	ExonRegion	0	5.70	4.46	10.50	39.76	4.12	22.31	5.58
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E2a_E5a	NovelJunction	0	1.67	1.63	6.51	9.27	5.46	6.00	0.89
10	ER3a	ExonRegion	0	4.96	2.57	8.04	17.45	4.46	14.51	4.48
11	E3a_E4a	KnownJunction	0	0.00	4.05	1.95	13.19	3.43	13.59	5.22
12	ER4a	ExonRegion	0	4.86	3.74	7.89	20.40	6.11	14.51	6.24
13	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER5a	ExonRegion	0	9.23	6.26	12.14	36.59	5.53	14.39	6.58
15	E5a_E7a	KnownJunction	1	12.03	5.28	16.31	40.18	6.13	10.56	8.13
16	ER6a	ExonRegion	0	0.00	0.00	0.00	1.25	0.00	0.00	0.67
17	ER7a	ExonRegion	0	12.38	7.92	14.99	40.57	5.62	13.25	8.73
18	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER8a	ExonRegion	0	10.79	3.02	11.01	34.86	5.13	12.82	10.17
20	E8a_E9a	KnownJunction	1	9.50	1.55	7.10	32.29	4.63	8.28	9.63
21	ER9a	ExonRegion	0	8.91	0.97	11.46	32.48	4.03	14.83	10.71
22	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER10a	ExonRegion	0	13.74	1.13	16.20	46.28	10.95	26.84	16.16
24	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	ER11a	ExonRegion	0	12.27	7.44	17.35	52.81	7.06	24.67	12.07
26	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER12a	ExonRegion	0	14.13	8.44	13.35	46.79	7.54	20.26	10.11
28	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER13a	ExonRegion	0	11.92	7.05	14.36	61.54	7.44	21.73	9.76
30	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER14a	ExonRegion	0	16.93	7.19	14.59	46.25	10.40	20.63	19.81
32	E14_Da	KnownBoundary	0	15.32	4.70	19.56	40.18	8.76	31.52	10.28
33	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	ER14b	ExonRegion	0	10.88	6.29	19.04	45.03	5.00	33.57	8.36
35	E14b_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E15_Aa	NovelBoundary	1	17.22	0.00	4.77	4.17	0.00	5.04	1.35
37	ER15a	ExonRegion	0	13.49	8.53	18.58	54.08	9.62	31.62	16.23
38	E15_Da	NovelBoundary	1	15.29	0.00	7.70	2.84	0.00	4.34	2.02
39	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER16a	ExonRegion	0	10.78	6.77	14.01	32.03	4.91	33.07	8.67
41	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER17a	ExonRegion	0	7.52	8.29	12.26	30.60	4.11	18.35	6.52
43	E17a_E18a	KnownJunction	0	7.46	5.83	7.06	25.30	2.12	15.95	7.04
44	E17a_E18b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER18a	ExonRegion	0	6.92	4.86	7.16	26.54	2.89	15.94	6.84
46	ER18b	ExonRegion	0	6.58	5.96	9.95	37.75	4.12	23.71	8.30
47	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	E18a_E19b	KnownJunction	0	4.04	5.65	8.98	31.21	2.26	24.33	10.29
49	ER19a	ExonRegion	0	1.46	1.58	1.90	2.99	0.97	3.19	1.01
50	ER19b	ExonRegion	0	5.13	6.07	11.03	37.69	4.21	25.93	12.59
51	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E19a_E20b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E20_Ab	NovelBoundary	0	4.49	2.78	3.94	20.81	0.00	13.45	2.48
54	ER20a	ExonRegion	0	6.03	1.21	9.07	36.64	4.42	18.01	8.10
55	ER20b	ExonRegion	0	16.75	7.20	16.65	52.69	8.94	31.72	13.44
56	E20a_E21a	KnownJunction	0	33.85	6.54	28.14	43.07	17.50	32.29	16.44
57	ER21a	ExonRegion	0	30.53	3.87	32.05	46.92	15.33	32.96	14.94
58	E21_Da	NovelBoundary	0	1.87	7.78	1.32	2.82	0.00	4.29	4.96
59	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E22_Aa	NovelBoundary	0	0.77	7.70	3.42	1.46	0.00	5.47	2.59
61	ER22a	ExonRegion	1	13.91	4.54	22.90	36.22	10.32	26.30	7.64
62	E22_Da	NovelBoundary	0	4.49	6.65	9.61	4.47	0.00	6.19	4.57
63	E22a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER23a	ExonRegion	0	8.05	5.75	11.04	31.54	7.33	21.49	10.23
65	E23a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	I23_AR1	ActiveIntronRegion	0	7.43	7.21	6.26	8.91	2.27	7.09	7.04
67	I23_AR3	ActiveIntronRegion	0	2.81	5.10	3.14	7.58	0.70	7.85	3.70
68	ER24a	ExonRegion	0	4.74	3.24	3.73	3.70	2.22	5.09	2.60
69	E24a_E25a	KnownJunction	0	1.89	0.00	2.90	1.57	2.95	8.15	1.30
70	E25_Aa	NovelBoundary	0	2.82	1.63	3.42	5.72	1.18	0.00	9.14
71	ER25a	ExonRegion	0	9.34	1.41	13.65	35.91	7.07	18.13	9.25
72	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	ER26a	ExonRegion	0	18.51	5.96	28.57	40.71	11.58	30.90	14.81
74	E26_Da	KnownBoundary	0	23.25	11.61	30.80	55.35	24.39	35.21	20.77
75	ER26b	ExonRegion	0	31.23	6.05	32.35	52.73	19.55	44.19	18.70