Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TRIO	Gene	0	218.99	609.39	303.55	925.69	95.15	347.59	108.11
2	344204	Transcript	0	190.94	708.93	287.18	908.12	77.86	236.55	108.08
3	397639	Transcript	1	84.73	94.84	94.93	218.87	30.78	181.70	21.39
4	344135	Transcript	0	10.10	23.65	10.18	30.81	3.36	11.88	2.90
5	ER1a	ExonRegion	1	19.03	139.11	26.55	119.33	3.24	35.00	6.75
6	E1a_E2a	KnownJunction	1	61.82	429.25	110.19	334.20	17.89	89.24	24.23
7	ER2a	ExonRegion	1	113.35	705.98	165.46	589.28	29.94	183.29	44.29
8	E2a_E3a	KnownJunction	0	163.28	983.58	192.71	854.59	29.51	276.98	61.14
9	ER3a	ExonRegion	1	127.67	955.25	221.91	855.07	29.51	240.15	71.59
10	E3a_E4a	KnownJunction	0	156.15	820.14	259.83	778.52	47.24	229.59	62.97
11	ER4a	ExonRegion	1	183.70	961.68	303.74	912.09	58.36	251.41	104.21
12	E4a_E5a	KnownJunction	1	172.89	1056.98	303.59	1008.33	52.61	263.92	100.43
13	ER5a	ExonRegion	1	173.48	1007.90	295.14	983.63	65.66	241.27	106.92
14	E5a_E6a	KnownJunction	1	169.54	1006.22	245.49	1052.06	68.03	232.03	119.71
15	ER6a	ExonRegion	1	182.35	1064.00	280.52	1107.82	88.87	241.98	143.17
16	E6a_E7a	KnownJunction	1	168.94	954.36	246.12	1012.34	82.92	195.08	122.42
17	ER7a	ExonRegion	1	169.56	935.24	247.08	1036.28	74.11	208.97	120.85
18	E7a_E8a	KnownJunction	1	249.56	903.34	310.84	1062.73	72.11	209.44	106.51
19	E7a_E9a	NovelJunction	1	1.64	82.60	3.36	41.10	0.88	11.20	1.38
20	ER8a	ExonRegion	1	223.29	937.76	300.20	1145.51	80.60	240.84	143.06
21	E8a_E9a	KnownJunction	1	206.69	775.80	272.71	976.82	68.88	173.53	104.02
22	ER9a	ExonRegion	1	162.73	801.36	219.50	917.32	55.73	180.18	93.47
23	E9a_E10a	KnownJunction	1	142.28	820.75	272.53	910.99	62.54	178.62	101.84
24	ER10a	ExonRegion	1	177.92	919.20	333.99	1044.96	77.86	228.44	117.91
25	E10a_E11a	KnownJunction	1	183.47	909.99	320.86	1063.98	84.83	216.41	124.37
26	ER11a	ExonRegion	1	188.32	913.29	353.95	1060.56	95.10	223.63	147.10
27	E11a_E12a	KnownJunction	0	258.06	988.17	371.39	1230.23	41.84	282.23	184.96
28	ER12a	ExonRegion	1	178.66	868.09	249.77	994.07	68.64	231.56	140.36
29	E12a_E13a	KnownJunction	0	303.76	1123.03	419.92	1440.43	185.74	333.95	257.75
30	ER13a	ExonRegion	1	175.36	763.35	244.18	913.37	78.86	182.32	129.93
31	E13a_E14a	KnownJunction	1	125.34	698.43	235.34	884.42	62.98	140.86	120.31
32	ER14a	ExonRegion	1	145.34	798.42	239.16	955.90	62.75	185.56	119.21
33	E14a_E15a	KnownJunction	1	125.98	795.71	220.73	931.69	50.21	210.32	114.22
34	ER15a	ExonRegion	1	152.28	715.07	237.01	833.18	60.46	177.35	110.59
35	E15a_E16a	KnownJunction	0	143.73	670.87	191.76	889.59	64.36	194.86	115.14
36	ER16a	ExonRegion	1	146.54	719.99	204.31	857.64	61.93	173.22	113.47
37	E16a_E17a	KnownJunction	1	150.69	788.93	177.42	884.96	59.87	193.01	122.05
38	ER17a	ExonRegion	1	147.44	760.51	180.49	919.68	62.86	173.25	110.88
39	E17a_E18a	KnownJunction	0	146.14	756.88	183.71	891.08	82.99	206.84	108.65
40	ER18a	ExonRegion	1	141.77	749.69	186.25	894.73	67.40	203.55	102.71
41	E18a_E19a	KnownJunction	0	164.50	688.42	237.84	969.59	83.57	193.31	100.06
42	ER19a	ExonRegion	0	189.02	808.92	291.54	1075.03	95.15	236.37	132.78
43	E19a_E20a	KnownJunction	1	199.54	791.43	313.14	1051.84	68.42	212.82	136.15
44	ER20a	ExonRegion	0	146.91	746.66	247.46	988.53	76.26	207.09	108.49
45	E20a_E21a	KnownJunction	0	125.17	634.32	230.18	895.63	56.43	209.65	119.37
46	ER21a	ExonRegion	0	160.45	619.92	253.71	782.55	70.52	190.92	96.64
47	E21a_E22a	KnownJunction	0	163.85	529.79	217.68	690.88	51.68	181.38	74.44
48	ER22a	ExonRegion	0	207.25	560.63	332.28	737.07	64.30	161.91	92.81
49	E22a_E23a	KnownJunction	0	234.78	600.91	376.37	827.55	69.37	185.91	93.23
50	ER23a	ExonRegion	0	224.67	636.91	368.18	873.03	64.15	179.70	91.20
51	E23a_E24a	KnownJunction	0	215.52	604.85	400.33	837.98	75.61	168.44	83.31
52	ER24a	ExonRegion	0	240.08	586.05	393.81	833.64	89.39	167.56	93.80
53	E24a_E25a	KnownJunction	0	239.93	589.40	363.38	846.62	89.12	180.23	96.62
54	ER25a	ExonRegion	0	334.40	715.68	468.53	990.54	114.86	209.51	123.36
55	E25a_E26a	KnownJunction	0	403.13	836.01	578.08	1098.00	74.09	291.21	143.41
56	ER26a	ExonRegion	0	323.62	803.65	489.33	1065.46	96.71	270.86	146.07
57	E26a_E27a	KnownJunction	0	290.57	715.92	410.39	914.92	114.60	223.94	129.14
58	ER27a	ExonRegion	0	353.12	771.47	485.88	1002.13	155.19	270.71	148.67
59	E27a_E28a	KnownJunction	0	338.19	741.09	467.83	1067.85	172.92	248.59	157.04
60	ER28a	ExonRegion	0	283.06	751.40	414.43	1031.30	120.65	222.84	140.79
61	E28a_E29a	KnownJunction	0	240.75	757.77	341.87	1083.35	97.05	257.33	119.97
62	ER29a	ExonRegion	1	209.78	754.86	348.16	1030.36	103.74	194.79	123.48
63	E29a_E30a	KnownJunction	0	229.87	693.64	353.64	917.25	105.07	207.70	114.65
64	E29a_E32a	NovelJunction	1	1.03	30.84	0.89	7.07	0.00	3.73	0.00
65	ER30a	ExonRegion	0	224.92	675.45	391.24	896.33	106.31	202.03	119.17
66	E30_Da	NovelBoundary	0	22.95	138.11	26.20	143.47	11.53	60.70	30.11
67	E30a_E31a	KnownJunction	0	185.53	454.68	369.91	725.47	93.78	184.57	81.78
68	ER31a	ExonRegion	0	194.35	575.89	361.25	787.38	88.67	208.92	86.31
69	E31a_E32a	KnownJunction	0	158.40	596.34	307.34	793.06	79.00	213.81	84.34
70	E32_Aa	NovelBoundary	1	81.43	27.22	132.62	18.12	3.69	4.74	3.07
71	ER32a	ExonRegion	0	168.12	668.71	245.50	912.26	77.71	235.58	90.16
72	E32a_E33a	KnownJunction	0	197.07	793.74	256.40	1046.77	75.82	279.92	102.24
73	ER33a	ExonRegion	0	202.74	802.36	259.07	1129.21	83.78	287.73	106.84
74	E33a_E34a	KnownJunction	0	206.37	750.89	225.03	1083.64	99.98	259.37	102.23
75	ER34a	ExonRegion	0	177.17	581.97	219.54	874.40	79.65	214.26	88.60
76	E34a_E35a	KnownJunction	0	86.44	387.53	135.90	542.34	68.26	148.55	59.86
77	I34_SR1	SilentIntronRegion	1	46.99	128.40	39.36	71.29	6.22	22.94	8.08
78	I34_AR1	ActiveIntronRegion	1	72.21	128.22	60.30	70.28	5.86	27.39	7.13
79	I34_AR6	ActiveIntronRegion	0	50.11	27.39	51.79	35.05	5.83	10.17	7.29
80	I34_AR8	ActiveIntronRegion	0	100.98	45.40	65.22	70.18	10.95	9.14	15.41
81	I34_AR9	ActiveIntronRegion	0	59.54	40.60	61.92	51.41	3.92	16.67	12.37
82	I34_SR6	SilentIntronRegion	0	70.00	38.90	60.60	49.26	6.73	12.45	13.94
83	I34_SR9	SilentIntronRegion	0	48.45	45.15	43.93	57.96	3.46	16.25	9.67
84	I34_AR16	ActiveIntronRegion	0	74.14	33.82	63.78	51.70	7.54	22.71	17.03
85	I34_SR12	SilentIntronRegion	0	121.45	55.38	89.96	77.22	9.16	26.74	17.28
86	I34_SR13	SilentIntronRegion	0	48.24	20.70	31.17	36.00	7.33	5.40	5.98
87	I34_SR17	SilentIntronRegion	0	48.41	20.34	45.41	36.51	3.35	9.77	7.06
88	I34_AR25	ActiveIntronRegion	0	45.06	31.05	48.07	42.39	4.25	15.97	8.26
89	I34_SR19	SilentIntronRegion	0	49.14	31.84	55.85	39.65	3.08	13.23	8.88
90	ER35a	ExonRegion	0	80.43	364.25	105.24	557.32	38.00	245.42	44.87
91	E35a_E36a	KnownJunction	0	141.00	486.57	156.74	777.43	46.27	321.65	54.83
92	ER36a	ExonRegion	0	130.23	454.73	156.46	776.47	49.78	333.42	68.72
93	E36a_E37a	KnownJunction	0	163.48	505.36	237.40	922.89	99.10	418.45	99.13
94	ER37a	ExonRegion	0	131.40	435.46	209.73	836.19	85.72	368.92	83.96
95	E37_Ab	KnownBoundary	0	122.65	396.72	192.10	799.38	78.40	323.39	74.15
96	ER37b	ExonRegion	0	123.84	409.57	198.87	796.96	87.54	331.48	86.22
97	E37a_E38a	KnownJunction	0	140.08	450.56	207.95	842.78	73.56	363.49	94.26
98	ER38a	ExonRegion	0	163.18	523.91	273.82	1009.45	92.92	412.40	115.19
99	E38a_E39a	KnownJunction	0	212.00	668.35	364.96	1286.37	116.07	500.35	140.38
100	ER39a	ExonRegion	0	216.95	596.91	390.10	1140.17	125.43	439.44	138.67
101	E39a_E40a	KnownJunction	0	194.30	527.11	356.24	938.41	115.17	355.28	122.39
102	ER40a	ExonRegion	0	325.30	531.51	504.32	1064.85	161.32	421.83	144.11
103	E40a_E41a	KnownJunction	0	365.99	472.28	618.87	1015.46	145.65	410.33	117.32
104	ER41a	ExonRegion	0	307.39	522.39	567.38	1074.93	145.91	418.98	141.05
105	E41a_E42a	KnownJunction	0	308.28	510.51	551.86	1065.52	152.26	437.13	151.74
106	ER42a	ExonRegion	0	386.20	527.40	616.56	1156.72	184.37	445.34	148.48
107	E42a_E43a	KnownJunction	0	337.62	467.11	477.12	1110.52	186.96	393.07	120.24
108	ER43a	ExonRegion	0	293.00	560.91	491.01	1162.49	169.49	486.06	136.01
109	E43a_E44a	KnownJunction	0	231.27	508.19	429.96	1156.55	182.56	449.62	139.89
110	ER44a	ExonRegion	0	235.83	528.32	418.33	1159.01	140.23	413.93	143.01
111	E44a_E45a	KnownJunction	0	220.47	489.49	346.47	1020.44	116.00	365.71	131.26
112	ER45a	ExonRegion	0	244.62	505.15	356.65	1049.19	134.50	402.41	135.81
113	E45a_E46a	KnownJunction	0	190.13	428.28	310.36	892.06	148.02	336.12	97.32
114	E45a_E59a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
115	I45	Intron	0	44.74	36.67	37.28	53.45	2.92	31.46	7.20
116	I45_AR1	ActiveIntronRegion	0	44.83	36.75	37.36	53.56	2.92	31.53	7.22
117	E46_Aa	NovelBoundary	0	82.40	82.02	71.88	130.17	1.18	86.19	15.48
118	ER46a	ExonRegion	0	344.46	544.65	497.52	1179.67	155.04	505.00	159.45
119	E46a_E47a	KnownJunction	0	398.62	668.06	598.84	1392.13	123.59	711.45	193.89
120	ER47a	ExonRegion	0	307.31	505.87	428.62	930.34	106.92	501.68	143.51
121	E47a_E48a	KnownJunction	0	203.77	214.56	295.91	420.13	82.85	245.30	119.58
122	ER48a	ExonRegion	0	39.74	196.05	55.93	329.63	15.23	175.38	29.34
123	E48a_E50a	KnownJunction	0	88.41	485.00	141.91	885.58	59.87	425.02	87.88
124	ER49a	ExonRegion	0	18.55	26.52	15.98	36.65	5.54	6.91	4.92
125	E49a_E50a	KnownJunction	0	1.65	20.78	4.37	24.98	1.18	16.86	0.89
126	ER50a	ExonRegion	0	278.30	661.56	335.61	1322.11	128.66	579.99	125.83
127	E50a_E51a	KnownJunction	0	550.93	737.15	668.81	1761.30	255.59	808.31	175.37
128	ER51a	ExonRegion	0	556.41	766.99	642.85	1717.35	203.97	809.24	181.51
129	E51a_E52a	KnownJunction	0	253.10	441.96	366.79	958.51	217.13	468.89	114.51
130	E52a_E53a	KnownJunction	0	349.29	524.59	418.67	1089.90	155.35	444.93	128.78
131	ER52a	ExonRegion	0	365.78	593.67	463.98	1266.60	212.30	572.54	149.01
132	ER53a	ExonRegion	0	371.61	769.74	445.01	1552.93	209.62	696.81	194.35
133	E53a_E54a	KnownJunction	0	322.50	806.30	387.19	1614.41	230.41	743.88	181.24
134	ER54a	ExonRegion	0	315.32	860.84	427.01	1770.52	218.92	791.30	208.73
135	E54a_E55a	KnownJunction	0	323.00	865.57	435.71	1875.30	184.22	854.59	214.07
136	ER55a	ExonRegion	0	399.04	857.07	548.07	1927.41	170.09	852.38	237.17
137	E55a_E56a	KnownJunction	0	316.99	685.61	465.23	1754.45	144.43	828.14	208.94
138	E55a_E57a	NovelJunction	1	0.88	47.50	1.64	26.55	10.49	1.02	5.22
139	E55a_E58a	NovelJunction	0	8.33	15.26	3.09	42.61	0.00	10.16	3.96
140	ER56a	ExonRegion	0	309.18	691.63	445.76	1388.25	159.23	654.73	178.54
141	E56a_E57a	KnownJunction	0	153.25	264.03	246.77	482.74	133.89	175.03	84.81
142	E56a_E58a	NovelJunction	1	68.18	98.94	74.52	357.52	8.48	191.30	59.53
143	I56_AR2	ActiveIntronRegion	0	59.23	54.20	35.07	87.29	4.73	32.16	12.35
144	I56_SR1	SilentIntronRegion	0	78.85	78.95	46.56	136.69	9.12	58.12	14.01
145	I56_AR3	ActiveIntronRegion	0	43.48	108.47	35.74	153.61	7.47	74.61	15.41
146	ER57a	ExonRegion	0	279.71	608.00	400.03	1085.64	161.42	514.14	107.64
147	E57a_E58a	KnownJunction	0	329.88	829.86	460.05	1354.04	224.07	689.40	118.98
148	E58_Aa	NovelBoundary	1	65.72	96.84	29.65	84.74	24.55	30.39	28.03
149	ER58a	ExonRegion	0	391.15	570.39	461.65	1191.80	166.61	658.96	142.86
150	E58_Da	NovelBoundary	1	179.55	58.24	138.80	120.04	92.30	44.57	15.72
151	I58	Intron	0	2.77	0.00	1.50	0.00	31.21	0.00	0.00
152	I58_AR1	ActiveIntronRegion	0	2.83	0.00	1.55	0.00	31.91	0.00	0.00
153	E59_Aa	NovelBoundary	1	146.17	35.62	120.16	91.68	58.60	18.68	18.09
154	ER59a	ExonRegion	1	169.46	189.68	189.86	437.73	61.55	363.39	42.77