Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	BRD9	Gene	0	50.11	67.94	85.73	79.00	97.99	41.26	71.92
2	388890	Transcript	1	94.26	72.61	163.79	85.63	147.86	33.53	69.97
3	323510	Transcript	0	0	0	0	0	0	0	0
4	334893	Transcript	0	31.19	26.64	50.98	43.89	68.40	11.05	43.90
5	323547	Transcript	0	4.57	0.02	3.61	0.07	2.69	0.00	0.70
6	ER1a	ExonRegion	0	6.00	18.07	6.09	25.44	7.65	15.12	7.00
7	E1a_E2a	KnownJunction	0	19.21	46.55	21.14	67.08	27.80	42.18	25.67
8	ER2a	ExonRegion	0	22.21	82.14	53.63	91.41	47.66	56.28	42.83
9	E2a_E3a	KnownJunction	0	38.74	87.75	97.30	97.66	55.63	42.67	62.11
10	ER3a	ExonRegion	0	34.27	67.35	83.33	76.10	56.87	41.33	58.54
11	E3a_E4a	KnownJunction	1	22.90	25.43	40.44	33.24	12.03	17.82	4.87
12	E3a_E4b	KnownJunction	0	22.66	20.99	52.19	44.24	61.34	15.62	54.45
13	E4_Aa	NovelBoundary	1	15.99	2.47	23.96	0.00	9.80	0.00	4.70
14	ER4a	ExonRegion	1	22.89	29.58	53.50	32.64	16.31	21.16	11.45
15	E4_Ab	KnownBoundary	1	12.82	30.05	30.67	22.49	13.85	27.07	9.54
16	ER4b	ExonRegion	0	57.72	59.13	99.00	75.44	111.04	32.96	62.28
17	E4_Da	NovelBoundary	0	62.00	49.36	89.64	54.81	130.53	20.53	50.79
18	E4a_E4c	KnownJunction	1	39.72	32.29	49.76	43.54	75.45	6.49	33.35
19	E4b_E5a	KnownJunction	0	81.85	57.32	131.63	56.32	114.60	34.25	59.60
20	ER4c	ExonRegion	0	71.98	57.10	106.80	59.85	125.80	28.20	56.89
21	ER4d	ExonRegion	0	87.90	65.18	135.62	79.26	133.77	33.05	72.77
22	ER5a	ExonRegion	0	139.98	111.10	229.36	112.12	175.26	73.91	105.63
23	E5a_E6a	KnownJunction	1	181.40	133.83	272.68	143.85	178.18	68.39	117.32
24	ER6a	ExonRegion	0	150.97	115.99	246.14	134.81	200.29	73.01	126.59
25	E6a_E7a	KnownJunction	1	24.25	5.54	31.72	21.05	17.50	8.50	22.37
26	E6a_E7b	KnownJunction	1	94.26	72.61	163.79	85.63	147.86	33.53	69.97
27	ER7a	ExonRegion	1	26.29	10.77	31.08	26.84	26.31	11.19	24.73
28	E7_Ab	KnownBoundary	0	24.33	15.95	30.94	30.26	26.40	7.80	26.63
29	ER7b	ExonRegion	0	89.71	93.51	169.08	94.24	159.25	43.65	97.09
30	E7a_E8a	KnownJunction	0	63.51	69.49	125.19	65.51	155.38	38.00	90.57
31	ER8a	ExonRegion	0	53.91	68.45	85.09	67.49	129.56	38.84	75.69
32	E8a_E10a	KnownJunction	0	23.62	36.04	54.85	49.96	71.65	25.62	58.56
33	E8a_E11a	NovelJunction	0	0.00	2.65	3.65	8.13	0.00	1.50	1.15
34	E9_Aa	NovelBoundary	1	29.64	11.87	39.89	6.64	28.08	9.27	6.99
35	ER9a	ExonRegion	0	6.09	0.03	5.10	0.13	5.37	0.00	1.39
36	E9_Da	NovelBoundary	1	42.83	13.42	37.22	13.22	14.25	1.21	7.60
37	E9a_E11a	KnownJunction	0	3.05	0.00	2.13	0.00	0.00	0.00	0.00
38	I9	Intron	0	18.11	12.32	22.99	4.90	8.80	3.18	8.05
39	I9_AR3	ActiveIntronRegion	0	19.82	14.07	25.35	5.40	9.11	3.65	9.32
40	ER10a	ExonRegion	0	37.56	58.58	64.55	66.06	91.53	29.78	72.47
41	E10a_E11a	KnownJunction	0	49.42	59.74	60.44	76.67	96.38	32.35	75.15
42	I10	Intron	0	10.60	14.16	9.50	6.22	3.62	3.83	8.27
43	I10_AR1	ActiveIntronRegion	0	14.73	17.94	11.21	7.66	4.07	5.22	9.82
44	I10_SR2	SilentIntronRegion	0	12.14	15.16	12.05	7.21	4.80	4.32	11.57
45	I10_AR2	ActiveIntronRegion	1	8.32	14.33	7.32	3.42	2.31	2.09	4.45
46	ER11a	ExonRegion	0	47.47	75.83	77.88	96.63	136.73	39.44	83.21
47	E11a_E12a	KnownJunction	0	52.61	97.78	94.01	108.96	182.42	41.73	105.72
48	ER12a	ExonRegion	0	58.48	109.34	106.63	117.66	145.94	49.51	116.16
49	E12a_E13a	KnownJunction	0	41.49	87.17	78.91	95.31	114.66	54.43	101.45
50	ER13a	ExonRegion	0	54.33	96.57	108.09	118.64	145.19	61.15	118.13
51	E13a_E14a	KnownJunction	0	45.63	87.85	103.50	85.82	135.11	51.86	101.78
52	ER14a	ExonRegion	0	54.89	101.18	124.07	111.14	144.07	67.40	132.48
53	E14a_E15a	KnownJunction	0	47.92	78.21	90.15	100.62	147.24	65.10	120.15
54	ER15a	ExonRegion	0	55.17	90.55	110.05	109.74	147.28	64.31	130.21
55	E15a_E16a	KnownJunction	0	55.13	65.78	108.50	66.32	133.75	50.52	93.18
56	ER16a	ExonRegion	0	45.39	73.96	78.27	79.92	89.00	46.84	72.49
57	E16a_E17a	KnownJunction	0	50.25	71.54	101.24	70.79	74.94	43.01	95.71
58	ER17a	ExonRegion	0	42.86	58.77	62.33	75.36	97.63	35.14	73.77
59	IG14	Intergenic	0	3.41	2.31	7.58	3.91	7.87	1.15	5.86
60	IG14_AR13	ActiveIntergenicRegion	0	7.25	6.92	11.15	10.82	12.04	3.24	8.50
61	IG14_AR12	ActiveIntergenicRegion	0	8.07	5.57	14.06	12.16	11.20	1.23	8.04
62	IG14_AR11	ActiveIntergenicRegion	0	7.68	7.82	12.24	13.80	10.80	3.88	8.16
63	IG14_AR10	ActiveIntergenicRegion	0	4.45	7.43	11.93	11.70	8.50	4.76	10.14
64	IG14_AR9	ActiveIntergenicRegion	0	5.27	4.34	8.08	9.53	8.73	1.40	8.63
65	IG14_SR7	SilentIntergenicRegion	0	5.66	2.43	5.24	4.73	7.71	0.32	5.01
66	IG14_AR8	ActiveIntergenicRegion	0	7.17	1.82	4.46	3.53	12.35	0.00	4.44
67	IG14_AR7	ActiveIntergenicRegion	0	6.32	1.35	4.74	1.80	14.85	0.00	6.90
68	IG14_SR6	SilentIntergenicRegion	0	8.19	4.74	10.96	5.19	11.99	0.00	10.37
69	IG14_AR6	ActiveIntergenicRegion	0	4.57	5.18	8.64	7.97	7.48	1.76	9.24
70	IG14_AR3	ActiveIntergenicRegion	0	7.61	4.83	10.21	5.99	10.78	1.97	6.69
71	IG14_SR2	SilentIntergenicRegion	0	2.67	1.10	5.89	2.37	9.22	0.49	4.20
72	IG14_AR2	ActiveIntergenicRegion	0	3.39	2.19	20.67	2.72	17.69	1.84	12.33
73	IG14_SR1	SilentIntergenicRegion	0	4.01	2.26	12.92	3.66	15.07	1.87	9.52
74	IG14_AR1	ActiveIntergenicRegion	0	1.55	0.43	7.86	3.06	10.04	0.00	5.45