Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PET112L	Gene	0	38.86	14.64	42.04	14.93	82.07	4.81	40.91
2	263985	Transcript	0	35.05	10.80	39.08	12.04	93.94	4.55	43.98
3	ER1a	ExonRegion	0	5.33	2.57	6.68	6.14	15.27	2.97	8.51
4	E1a_E2a	KnownJunction	0	24.10	9.80	31.67	14.17	27.55	7.13	27.27
5	ER2a	ExonRegion	0	30.85	8.29	38.94	13.28	68.74	5.00	44.83
6	E2a_E3a	KnownJunction	0	24.67	12.53	25.32	9.35	61.67	1.66	24.29
7	ER3a	ExonRegion	0	25.04	12.44	33.25	8.09	63.09	4.09	40.99
8	E3a_E4a	KnownJunction	0	42.28	13.74	54.32	9.29	127.07	9.17	55.05
9	ER4a	ExonRegion	0	27.03	10.69	36.31	12.58	81.23	5.21	42.22
10	E4a_E5a	KnownJunction	0	22.35	14.58	27.03	9.70	89.72	4.34	32.76
11	ER5a	ExonRegion	0	27.13	11.43	23.81	16.02	70.46	1.90	31.57
12	E5a_E6a	KnownJunction	0	31.29	9.48	31.96	16.58	94.89	4.34	45.17
13	ER6a	ExonRegion	0	34.65	9.36	42.08	17.89	135.23	0.91	57.16
14	E6a_E7a	KnownJunction	0	47.20	9.43	51.63	17.80	111.39	3.78	66.33
15	ER7a	ExonRegion	1	42.94	8.03	56.63	22.52	125.38	2.83	72.62
16	E7a_E8a	KnownJunction	0	31.53	9.54	39.14	21.67	102.03	1.13	44.37
17	ER8a	ExonRegion	0	27.71	7.02	43.17	16.54	91.12	0.95	55.89
18	E8a_E9a	KnownJunction	0	23.52	4.49	34.58	10.92	85.09	1.47	57.50
19	E9_Aa	NovelBoundary	0	7.24	8.72	3.09	5.45	2.01	0.00	1.19
20	ER9a	ExonRegion	0	34.01	9.50	44.36	10.06	115.78	2.46	52.42
21	E9a_E10a	KnownJunction	0	43.24	10.01	44.28	1.49	109.09	8.39	46.73
22	I9_AR1	ActiveIntronRegion	1	14.47	4.65	3.53	5.40	0.89	1.56	2.21
23	I9_SR2	SilentIntronRegion	1	13.69	6.77	3.47	4.41	0.55	0.72	2.88
24	I9_SR3	SilentIntronRegion	1	12.53	5.66	3.51	3.96	0.29	0.45	2.72
25	E10_Aa	NovelBoundary	1	20.65	2.65	3.15	0.00	0.00	6.03	0.00
26	ER10a	ExonRegion	0	68.99	12.10	59.54	12.43	126.39	7.36	53.16
27	E10_Da	NovelBoundary	1	25.00	8.28	4.63	5.66	0.95	3.22	1.78
28	E10a_E11a	KnownJunction	0	47.57	6.28	44.56	4.71	150.17	7.24	44.54
29	ER11a	ExonRegion	0	42.94	6.75	41.65	9.49	121.59	3.77	51.40
30	E11_Da	NovelBoundary	0	3.82	8.93	3.75	0.00	3.09	0.00	1.43
31	E11a_E12a	KnownJunction	0	33.10	8.33	31.38	2.87	79.69	2.20	33.46
32	E11a_E13a	NovelJunction	0	4.51	0.00	9.36	1.35	9.80	0.00	1.46
33	I11	Intron	0	30.23	22.25	27.84	12.50	1.39	2.07	5.60
34	I11_SR3	SilentIntronRegion	1	16.53	23.00	23.80	9.45	1.00	2.25	3.52
35	I11_AR3	ActiveIntronRegion	1	52.40	32.89	46.21	20.23	1.14	3.51	7.69
36	I11_SR4	SilentIntronRegion	1	30.21	14.70	35.13	10.88	1.50	1.19	5.76
37	I11_AR4	ActiveIntronRegion	0	44.02	33.37	43.86	19.67	2.35	2.87	9.76
38	I11_SR5	SilentIntronRegion	1	21.55	19.78	25.57	8.05	1.47	2.82	2.05
39	I11_AR5	ActiveIntronRegion	0	18.87	25.24	19.09	12.04	1.08	1.41	4.61
40	E12_Aa	NovelBoundary	1	8.31	41.72	9.21	17.23	2.01	1.66	6.06
41	ER12a	ExonRegion	1	61.51	30.75	50.15	7.74	104.12	7.32	38.87
42	E12_Da	NovelBoundary	1	58.40	24.80	30.95	15.33	3.18	2.87	5.95
43	E12a_E13a	KnownJunction	0	21.60	4.39	27.09	4.01	130.99	10.24	37.72
44	I12	Intron	1	60.60	35.37	50.23	14.39	1.77	2.75	6.39
45	I12_AR1	ActiveIntronRegion	1	60.68	35.42	50.30	14.41	1.78	2.75	6.40
46	E13_Aa	NovelBoundary	1	69.75	42.01	56.99	10.59	0.85	1.10	6.62
47	ER13a	ExonRegion	0	55.70	28.41	57.40	25.63	60.86	7.81	34.57
48	IG44	Intergenic	0	191.91	181.79	161.86	109.90	140.91	16.90	72.26
49	IG44_AR10	ActiveIntergenicRegion	0	117.97	144.35	117.24	97.77	104.99	15.88	61.00
50	IG44_SR4	SilentIntergenicRegion	0	178.10	218.14	166.43	138.73	191.31	21.68	77.56
51	IG44_AR9	ActiveIntergenicRegion	0	267.58	230.96	214.36	150.03	201.45	23.04	99.95
52	IG44_SR3	SilentIntergenicRegion	0	176.06	215.70	194.41	108.49	180.87	25.47	82.45
53	IG44_AR8	ActiveIntergenicRegion	0	289.37	208.11	208.54	124.54	189.18	19.98	88.29
54	IG44_SR2	SilentIntergenicRegion	0	334.91	207.41	242.54	125.09	194.11	16.34	83.31
55	IG44_AR7	ActiveIntergenicRegion	0	246.88	261.25	215.35	119.19	196.11	24.79	104.21
56	IG44_SR1	SilentIntergenicRegion	0	194.31	220.89	167.52	116.12	147.98	16.79	78.74
57	IG44_AR6	ActiveIntergenicRegion	0	132.51	131.24	125.46	71.34	78.02	11.01	46.06
58	IG44_AR5	ActiveIntergenicRegion	0	125.56	108.49	128.03	62.35	73.67	13.67	34.59
59	IG44_AR4	ActiveIntergenicRegion	0	152.24	111.50	134.87	57.91	83.23	12.26	35.45
60	IG44_AR3	ActiveIntergenicRegion	0	174.57	113.77	143.19	61.32	84.68	8.21	40.68
61	IG44_AR2	ActiveIntergenicRegion	0	143.99	113.48	125.32	53.94	77.86	5.13	41.15
62	IG44_AR1	ActiveIntergenicRegion	0	143.02	114.38	109.69	64.63	74.57	6.97	34.20