Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COL25A1	Gene	0	0.54	0.11	14.18	3.49	5.02	1.09	0.00
2	399126	Transcript	0	0	0	0	0	0	0	0
3	399132	Transcript	0	3.57	0.00	45.84	0.19	11.16	0.80	0.00
4	399127	Transcript	0	0.03	0.00	7.32	1.69	2.55	0.22	0.00
5	401873	Transcript	0	0.26	0.00	0.84	0.42	0.63	0.00	0.00
6	399129	Transcript	0	0	0	0	0	0	0	0
7	333642	Transcript	0	0	0	0	0	0	0	0
8	IG5_AR23	ActiveIntergenicRegion	0	1.49	1.33	2.72	0.46	8.70	0.00	3.44
9	ER1a	ExonRegion	0	0.63	0.00	13.89	5.24	4.75	4.14	0.00
10	E1_Ab	KnownBoundary	0	0.00	0.00	4.47	4.17	2.93	3.08	0.00
11	ER1b	ExonRegion	0	0.29	0.00	7.57	5.21	3.80	1.65	0.00
12	E1_Da	KnownBoundary	0	0.00	0.00	5.16	6.31	2.21	3.03	0.00
13	E1a_E1c	KnownJunction	0	0.00	0.00	0.62	3.36	0.00	0.00	0.00
14	ER1c	ExonRegion	0	0.27	0.00	6.50	6.90	2.58	1.10	0.00
15	E1_Ac	KnownBoundary	0	1.03	0.00	4.28	12.65	2.35	0.00	0.00
16	ER1d	ExonRegion	0	0.59	0.00	7.60	12.91	2.37	1.49	0.00
17	E1_Ad	KnownBoundary	0	0.63	0.00	10.76	7.59	3.69	5.36	0.00
18	ER1e	ExonRegion	0	0.24	0.62	15.87	10.34	6.53	2.34	0.00
19	E1b_E2a	KnownJunction	0	1.03	0.00	38.44	16.88	14.92	1.21	0.00
20	ER2a	ExonRegion	0	0.36	0.00	30.91	8.14	6.88	4.68	0.00
21	E2a_E3a	KnownJunction	0	0.00	0.00	16.70	1.46	10.79	1.13	0.00
22	ER3a	ExonRegion	0	0.00	0.00	12.92	3.21	9.43	0.35	0.00
23	E3a_E4a	KnownJunction	0	0.00	0.00	5.96	3.77	4.38	0.00	0.00
24	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E4a_E7a	KnownJunction	0	0.00	0.00	0.00	1.68	1.18	0.00	0.00
26	ER4a	ExonRegion	0	0.00	0.00	8.04	4.99	6.18	0.00	0.00
27	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E7a_E8b	KnownJunction	0	0.00	0.00	4.79	1.60	2.28	0.00	0.00
32	ER7a	ExonRegion	0	0.00	0.00	10.01	3.74	4.99	0.75	0.00
33	ER8a	ExonRegion	0	0.00	0.00	2.17	0.50	0.65	0.25	0.00
34	ER8b	ExonRegion	0	0.00	0.00	11.93	3.45	3.08	1.23	0.00
35	E9a_E10a	KnownJunction	0	0.00	0.00	16.11	0.00	4.26	0.00	0.00
36	E9a_E11a	KnownJunction	0	0.00	0.00	1.72	3.06	0.00	2.14	0.00
37	E9a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER9a	ExonRegion	0	0.00	0.00	16.83	3.23	3.63	1.63	0.00
39	ER10a	ExonRegion	0	0.00	0.00	12.83	1.02	3.50	0.00	0.00
40	E10a_E12a	KnownJunction	0	0.00	0.00	6.97	1.46	4.45	0.00	0.00
41	ER11a	ExonRegion	0	0.00	0.00	1.76	1.44	0.61	2.47	0.00
42	E11a_E12a	KnownJunction	0	0.00	0.00	0.83	0.00	0.00	2.97	0.00
43	ER12a	ExonRegion	0	0.00	0.00	11.52	1.13	4.70	1.34	0.00
44	E12a_E13a	KnownJunction	0	0.00	0.00	10.88	0.00	9.18	1.66	0.00
45	ER13a	ExonRegion	0	0.00	0.00	15.07	0.83	7.24	1.23	0.00
46	E13a_E14a	KnownJunction	0	0.00	0.00	9.96	1.46	3.18	0.00	0.00
47	ER14a	ExonRegion	0	0.31	0.00	13.70	2.63	5.07	0.23	0.00
48	ER15a	ExonRegion	0	0.77	0.00	18.59	3.21	11.23	0.00	0.00
49	E15a_E16a	KnownJunction	0	0.85	0.00	21.25	2.44	14.98	0.00	0.00
50	ER16a	ExonRegion	0	0.28	0.00	19.28	2.17	8.98	0.00	0.00
51	E16a_E17a	KnownJunction	0	0.00	0.00	13.29	3.22	4.56	0.00	0.00
52	E17a_E18a	KnownJunction	0	0.00	0.00	8.03	1.33	4.22	0.00	0.00
53	ER17a	ExonRegion	0	0.00	0.00	16.76	3.46	5.01	0.00	0.00
54	ER18a	ExonRegion	0	0.00	0.00	17.34	3.71	7.74	0.41	0.00
55	E18a_E19a	KnownJunction	0	0.83	0.00	13.67	1.60	8.23	0.00	0.00
56	ER19a	ExonRegion	0	0.00	0.00	17.80	2.80	7.14	2.38	0.00
57	E19a_E20a	KnownJunction	0	0.00	0.00	12.52	3.03	6.52	3.24	0.00
58	ER20a	ExonRegion	0	0.00	0.00	9.93	1.04	5.65	2.18	0.00
59	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
60	E20a_E22a	NovelJunction	0	0.00	0.00	10.88	3.09	3.20	0.00	0.00
61	ER21a	ExonRegion	0	0.15	0.00	2.29	0.11	2.05	0.25	0.00
62	E21a_E22a	KnownJunction	0	0.67	0.00	2.50	0.00	1.98	0.00	0.00
63	ER22a	ExonRegion	0	0.77	0.00	8.44	1.52	5.21	0.00	0.00
64	E22a_E23a	KnownJunction	0	0.00	0.00	13.67	2.84	4.54	0.00	0.00
65	ER23a	ExonRegion	0	0.04	0.00	12.74	1.63	6.24	0.00	0.00
66	E23a_E24a	KnownJunction	0	0.00	0.00	0.79	0.00	0.00	0.00	0.00
67	E23a_E25a	KnownJunction	0	0.00	0.00	8.10	1.41	2.97	0.00	0.00
68	ER24a	ExonRegion	0	0.00	0.00	0.80	0.00	0.02	0.00	0.00
69	E24a_E25a	KnownJunction	0	0.00	0.00	0.82	0.00	0.00	0.00	0.00
70	ER25a	ExonRegion	0	0.29	0.00	11.11	1.86	4.39	0.00	0.00
71	E25a_E26a	KnownJunction	0	1.32	0.00	12.92	1.44	5.53	0.00	0.00
72	ER26a	ExonRegion	0	1.32	0.00	12.80	2.57	4.78	0.00	0.00
73	E26a_E27a	KnownJunction	0	0.00	0.00	2.87	0.00	0.97	0.00	0.00
74	E26a_E28a	KnownJunction	0	0.00	0.00	4.76	3.20	3.18	1.10	0.00
75	E27a_E28a	KnownJunction	0	0.85	0.00	4.94	1.68	2.26	0.00	0.00
76	ER27a	ExonRegion	0	0.77	0.00	5.84	1.25	2.19	0.00	0.00
77	ER28a	ExonRegion	0	0.46	0.00	14.00	5.21	7.25	0.00	0.00
78	E28a_E29a	KnownJunction	0	0.00	0.00	12.36	3.31	9.08	0.00	0.00
79	ER29a	ExonRegion	0	0.48	0.00	18.83	4.99	10.33	0.00	0.00
80	E29a_E30a	KnownJunction	0	0.98	0.00	18.41	2.79	8.53	0.00	0.00
81	ER30a	ExonRegion	0	0.83	0.00	17.74	2.33	6.37	0.00	0.00
82	E30_Da	KnownBoundary	0	0.70	0.00	13.34	1.54	6.20	0.00	0.00
83	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	ER30b	ExonRegion	0	1.08	0.00	14.01	3.97	5.41	0.00	0.00
85	E30b_E31a	KnownJunction	0	1.64	0.00	12.83	5.88	2.35	0.00	0.00
86	ER31a	ExonRegion	0	0.89	0.00	16.63	2.69	5.10	0.10	0.00
87	E31a_E32a	KnownJunction	0	0.00	0.00	16.09	0.00	12.26	0.00	0.00
88	ER32a	ExonRegion	0	0.26	0.00	15.50	2.27	9.73	1.23	0.00
89	E33a_E34a	KnownJunction	0	0.00	0.00	4.70	0.00	2.35	0.00	0.00
90	E33a_E35a	KnownJunction	0	1.03	0.00	3.36	1.68	2.10	0.00	0.00
91	E33a_E36a	KnownJunction	0	0.00	0.00	0.78	3.98	2.12	0.00	0.00
92	ER33a	ExonRegion	0	0.77	0.00	12.95	3.74	7.65	0.91	0.00
93	ER34a	ExonRegion	0	0.00	0.00	7.57	0.00	1.15	0.00	0.00
94	E34a_E35a	KnownJunction	0	0.00	0.00	5.66	0.00	1.01	0.00	0.00
95	ER35a	ExonRegion	0	1.37	0.00	9.22	0.00	3.19	0.00	0.00
96	E35a_E36a	KnownJunction	0	1.03	1.47	6.57	0.00	3.48	0.00	0.00
97	ER36a	ExonRegion	0	0.60	0.72	9.58	2.40	4.78	0.75	0.00
98	E36a_E37a	KnownJunction	0	0.00	1.63	8.32	2.71	2.17	1.66	0.00
99	ER36b	ExonRegion	0	0.00	0.00	0.00	0.00	0.40	0.00	0.00
100	ER37a	ExonRegion	0	1.00	0.99	9.65	3.09	5.02	0.95	0.00
101	E37a_E38a	KnownJunction	0	1.62	0.00	6.78	0.00	4.45	0.00	0.00
102	E37a_E39a	KnownJunction	0	0.00	0.00	0.00	2.87	0.00	0.00	0.00
103	E38a_E39a	KnownJunction	0	1.03	0.00	14.40	1.14	4.13	0.00	0.00
104	ER38a	ExonRegion	0	1.39	0.00	13.50	0.00	4.83	0.00	0.00
105	ER39a	ExonRegion	0	0.47	0.00	12.09	1.69	3.19	0.00	0.00
106	E39_Da	KnownBoundary	0	0.00	0.00	10.50	1.63	0.00	0.00	0.00
107	E39a_E40a	KnownJunction	0	0.00	0.00	0.00	0.00	2.10	0.00	0.00
108	ER39b	ExonRegion	0	0.40	0.00	7.75	0.53	0.86	0.00	0.00
109	ER39c	ExonRegion	0	0.00	0.00	0.98	0.00	0.00	0.00	0.00
110	I39_AR1	ActiveIntronRegion	0	0.32	0.00	9.81	0.81	2.83	0.32	0.00
111	I39_SR2	SilentIntronRegion	0	0.39	0.10	9.29	1.26	1.74	0.00	0.00
112	ER40a	ExonRegion	0	0.00	0.00	3.83	1.01	0.93	0.00	0.00
113	E40a_E41a	KnownJunction	0	0.00	0.00	1.42	0.00	0.00	0.00	0.00
114	ER41a	ExonRegion	0	0.55	0.00	16.10	2.21	2.28	0.00	0.00
115	E41a_E42a	KnownJunction	0	1.65	0.00	34.37	7.53	3.34	0.00	0.00
116	ER42a	ExonRegion	0	1.62	0.81	48.62	2.52	13.06	0.00	0.00
117	E42_Da	KnownBoundary	0	4.31	0.00	56.43	1.33	21.62	0.00	0.00
118	ER42b	ExonRegion	0	3.57	0.00	45.84	0.19	11.16	0.80	0.00
119	IG4_AR10	ActiveIntergenicRegion	0	2.35	0.29	39.92	2.72	13.66	1.37	0.02
120	IG4_AR9	ActiveIntergenicRegion	0	0.80	0.00	15.61	0.90	7.85	0.17	0.00
121	IG4_SR3	SilentIntergenicRegion	0	1.36	0.00	16.04	1.07	12.99	0.00	0.23
122	IG4_AR8	ActiveIntergenicRegion	0	1.41	0.39	13.16	0.57	5.61	0.59	0.00
123	IG4_AR7	ActiveIntergenicRegion	0	0.20	0.00	15.92	1.18	6.10	0.58	0.00
124	IG4_AR6	ActiveIntergenicRegion	0	0.00	0.00	13.04	2.46	7.19	2.17	0.30