Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SEC31A	Gene	0	408.53	773.32	468.16	1078.09	358.58	1235.06	561.77
2	355196	Transcript	0	130.85	247.49	82.63	206.37	88.63	238.85	79.19
3	311785	Transcript	1	37.49	63.89	221.53	390.14	32.37	711.56	123.55
4	395310	Transcript	0	0	0	0	0	0	0	0
5	348405	Transcript	0	0	0	0	0	0	0	0
6	264405	Transcript	0	31.91	78.58	19.54	105.12	26.97	138.80	39.58
7	326950	Transcript	1	144.08	262.65	68.16	262.13	28.43	409.96	194.56
8	ER1a	ExonRegion	0	183.80	376.88	113.75	289.75	117.08	353.51	125.75
9	E1a_E2a	KnownJunction	0	263.10	517.92	180.68	410.51	155.63	459.35	180.27
10	ER2a	ExonRegion	1	267.66	451.25	162.13	418.32	216.62	497.40	152.95
11	E2a_E3a	KnownJunction	1	54.04	107.48	29.93	90.19	31.86	91.25	12.34
12	E3a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER3a	ExonRegion	0	16.51	31.44	9.27	29.48	10.56	31.58	3.86
14	I3_AR1	ActiveIntronRegion	1	87.17	64.37	44.31	21.20	55.63	23.34	13.97
15	ER4a	ExonRegion	0	132.02	163.87	113.16	269.34	127.49	223.00	130.72
16	E4a_E5a	KnownJunction	0	273.21	449.11	189.20	798.08	44.45	716.55	326.10
17	E4a_E5b	NovelJunction	0	61.85	134.48	59.26	238.46	19.04	252.72	82.48
18	ER5a	ExonRegion	0	305.26	530.89	223.88	909.04	61.95	846.55	356.69
19	ER5b	ExonRegion	0	202.91	528.34	177.59	751.44	57.88	739.99	284.20
20	E5a_E6a	KnownJunction	0	210.09	632.01	269.16	767.84	64.23	735.52	270.10
21	ER6a	ExonRegion	0	460.13	779.04	497.09	1112.60	344.96	1184.45	518.86
22	E6a_E7a	KnownJunction	0	332.95	726.48	401.58	928.36	286.92	1058.32	427.61
23	ER7a	ExonRegion	0	531.46	834.59	617.41	1082.43	276.64	1277.29	467.73
24	E7a_E8a	KnownJunction	0	529.37	808.90	602.53	967.15	268.13	1049.08	436.06
25	E7a_E9a	NovelJunction	1	5.59	41.35	15.99	84.85	0.00	130.11	1.66
26	ER8a	ExonRegion	0	621.38	881.63	681.23	1074.65	340.03	1218.77	546.79
27	E8a_E9a	KnownJunction	0	445.59	735.13	552.96	849.52	310.87	984.52	498.75
28	ER9a	ExonRegion	0	394.37	833.12	497.40	1037.75	298.39	1013.93	486.86
29	E9a_E10a	KnownJunction	0	342.44	802.67	498.09	990.02	358.89	843.63	526.48
30	ER10a	ExonRegion	0	393.46	857.53	523.58	1123.15	378.91	947.29	586.85
31	E10a_E12a	KnownJunction	0	367.16	784.15	481.23	1077.06	304.80	851.70	528.11
32	E10a_E13a	NovelJunction	0	7.63	61.29	14.59	70.95	1.18	55.74	2.45
33	ER11a	ExonRegion	0	3.38	0.94	0.82	0.97	0.00	0.95	0.00
34	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER12a	ExonRegion	0	452.37	938.14	571.29	1241.94	382.45	1007.75	638.33
36	E12a_E13a	KnownJunction	0	519.02	947.06	657.57	1394.35	446.05	1220.17	725.70
37	ER13a	ExonRegion	0	453.80	940.28	536.73	1255.66	360.67	1071.03	608.90
38	E13a_E14a	KnownJunction	0	535.95	925.65	606.46	1329.90	411.52	1162.49	614.49
39	ER14a	ExonRegion	0	478.96	820.16	523.84	1254.67	339.62	990.19	547.74
40	E14a_E15a	KnownJunction	0	478.13	714.14	518.78	1093.48	307.59	818.63	427.38
41	ER15a	ExonRegion	0	398.11	703.54	487.43	1061.07	288.55	805.75	445.93
42	E15_Da	NovelBoundary	1	105.01	4.20	134.23	3.36	0.00	4.53	1.93
43	E15a_E16a	KnownJunction	0	371.32	721.18	541.04	1104.10	293.55	900.95	476.09
44	E16_Aa	NovelBoundary	1	84.20	5.07	132.52	4.36	86.36	1.29	0.57
45	ER16a	ExonRegion	0	402.78	686.46	547.90	1030.57	313.40	855.40	479.62
46	E16a_E17a	KnownJunction	0	108.35	200.24	178.31	198.14	119.11	287.11	259.93
47	E16a_E18a	NovelJunction	0	1.00	20.47	4.99	51.42	4.66	43.39	13.67
48	E16a_E19a	KnownJunction	1	302.87	397.01	332.75	660.10	192.17	449.91	177.35
49	ER17a	ExonRegion	1	54.01	163.07	157.07	221.93	90.93	280.85	249.43
50	E17a_E18a	KnownJunction	1	14.82	112.23	108.64	180.83	56.16	207.03	163.82
51	E17a_E19a	NovelJunction	0	93.16	77.68	85.89	51.77	41.36	68.85	81.00
52	ER18a	ExonRegion	1	35.39	155.21	164.77	255.76	75.88	288.53	234.75
53	E18a_E19a	KnownJunction	1	54.13	138.79	206.34	270.94	93.36	296.11	236.81
54	ER19a	ExonRegion	0	424.21	735.61	667.61	1186.32	303.24	1006.98	562.52
55	E19a_E20a	KnownJunction	0	407.15	859.05	632.67	1330.53	250.12	1176.00	563.44
56	ER20a	ExonRegion	0	398.18	784.05	596.02	1151.04	314.02	1045.82	581.06
57	E20a_E21a	KnownJunction	0	334.57	633.72	527.09	1079.28	422.84	1077.99	547.66
58	ER21a	ExonRegion	0	402.35	844.78	623.14	1211.96	357.40	1298.52	595.49
59	E21a_E22a	KnownJunction	0	433.09	988.73	631.73	1393.59	377.40	1501.75	655.76
60	ER22a	ExonRegion	0	582.34	1182.22	787.52	1694.26	567.05	1874.36	877.92
61	E22a_E23a	KnownJunction	0	481.19	1159.83	691.96	1680.43	449.37	1921.14	951.06
62	ER23a	ExonRegion	0	558.36	1304.38	692.79	1826.73	553.50	2055.82	969.36
63	E23a_E24a	KnownJunction	0	376.96	1156.86	573.10	1663.42	501.47	1920.12	921.50
64	E23a_E26a	NovelJunction	1	4.82	18.65	7.63	38.36	0.00	10.29	4.51
65	ER24a	ExonRegion	0	541.32	1103.05	684.45	1522.32	592.10	1954.64	893.08
66	E24a_E25a	KnownJunction	1	41.22	65.76	21.77	55.86	25.20	137.32	48.81
67	E24a_E26a	KnownJunction	0	495.37	994.01	644.77	1407.90	514.15	1950.65	691.26
68	ER25a	ExonRegion	0	35.38	65.75	16.54	56.94	21.73	129.64	51.86
69	E25a_E26a	KnownJunction	1	22.93	35.15	13.15	38.28	18.23	90.37	38.09
70	ER26a	ExonRegion	0	610.74	1168.76	818.76	1666.92	513.32	2441.34	916.97
71	E26_Ac	KnownBoundary	0	673.81	1400.95	946.46	1982.99	848.00	2989.92	1172.70
72	ER26b	ExonRegion	0	685.94	1338.86	949.74	1910.61	728.46	2869.45	1131.82
73	ER26c	ExonRegion	0	677.61	1423.08	939.53	2021.58	846.94	2931.11	1189.31
74	ER26d	ExonRegion	0	549.59	1264.35	742.96	1892.66	663.55	2620.16	1050.92
75	E26b_E27a	KnownJunction	1	306.36	987.44	233.85	1313.32	324.95	1433.20	696.31
76	E26b_E29a	KnownJunction	1	37.49	63.89	221.53	390.14	32.37	711.56	123.55
77	ER27a	ExonRegion	1	384.91	1127.30	279.92	1392.87	500.53	1552.02	742.36
78	E27_Da	KnownBoundary	1	321.68	634.69	207.78	785.86	425.99	715.31	588.76
79	E27a_E28a	NovelJunction	1	28.37	61.74	4.71	69.79	9.66	168.30	22.19
80	E27a_E29a	KnownJunction	0	88.56	303.91	64.97	478.67	96.68	474.54	98.69
81	ER27b	ExonRegion	1	373.61	608.24	244.37	773.78	386.62	751.75	629.52
82	E27b_E28a	KnownJunction	1	88.64	133.22	9.77	83.44	34.44	159.65	104.13
83	E27b_E29a	KnownJunction	0	294.76	392.07	243.00	639.89	342.93	580.48	494.65
84	E28_Aa	NovelBoundary	1	112.94	52.78	25.09	12.49	26.63	8.01	44.05
85	ER28a	ExonRegion	1	140.62	202.26	18.45	143.34	38.75	278.46	151.02
86	E28a_E29a	KnownJunction	1	145.09	248.63	25.32	180.43	40.55	363.94	164.60
87	ER29a	ExonRegion	0	662.87	1182.30	681.75	1906.37	481.08	2542.09	1041.99
88	E29a_E30a	KnownJunction	0	750.40	1299.83	769.47	1919.62	551.26	2811.75	1164.07
89	ER30a	ExonRegion	0	427.56	1052.37	540.82	1546.18	467.22	2136.67	869.76
90	E30_Da	KnownBoundary	0	174.38	469.08	207.02	619.84	260.17	1064.08	336.27
91	E30a_E30b	KnownJunction	0	201.96	466.50	219.09	641.30	0.00	837.81	358.50
92	E30_Ab	KnownBoundary	0	151.03	297.26	193.58	509.26	179.37	604.15	266.68
93	ER30b	ExonRegion	0	373.31	902.88	468.48	1252.20	424.36	1878.72	722.22
94	ER30c	ExonRegion	0	412.78	831.85	501.55	1216.04	399.30	1603.00	690.77
95	E30b_E31a	KnownJunction	0	463.48	859.55	562.80	1240.66	417.30	1588.02	698.97
96	E31_Aa	NovelBoundary	0	237.46	369.98	285.39	518.44	133.57	657.02	288.89
97	ER31a	ExonRegion	0	604.41	964.45	635.83	1453.04	643.20	1967.87	797.25
98	E31a_E32a	KnownJunction	0	484.26	1052.35	570.40	1690.19	413.66	2280.63	761.53
99	E31a_E33a	NovelJunction	0	2.05	27.09	9.08	34.30	4.43	18.52	3.38
100	ER32a	ExonRegion	0	579.39	1110.16	659.69	1614.78	542.17	2292.09	855.10
101	E32a_E33a	KnownJunction	0	748.83	946.93	722.77	1393.86	506.98	1927.79	832.21
102	ER33a	ExonRegion	0	660.97	900.31	668.77	1362.94	641.01	1926.47	822.08
103	E33_Da	KnownBoundary	0	490.42	653.21	509.40	1047.75	408.96	1487.79	481.03
104	ER33b	ExonRegion	0	393.55	467.40	399.05	772.67	306.82	1257.56	440.54
105	IG15	Intergenic	0	5.65	11.30	3.15	12.10	0.17	17.22	3.46
106	IG15_AR3	ActiveIntergenicRegion	0	10.03	11.64	8.01	9.50	2.53	17.79	4.65
107	IG15_SR2	SilentIntergenicRegion	0	5.59	11.51	3.01	12.44	0.08	17.52	3.48