Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 ALPK1 Gene 0 55.47 9.23 32.36 7.64 3.82 11.42 83.00 2 177648 Transcript 0 52.71 8.53 33.08 6.78 1.44 9.46 89.37 3 309610 Transcript 0 16.14 5.10 8.39 3.30 4.44 4.58 14.64 4 ER1a ExonRegion 0 2.66 2.04 0.70 0.62 0.00 0.61 3.11 5 ER1b ExonRegion 0 92.08 28.26 43.43 7.68 0.00 13.80 101.09 6 E1a_E2a KnownJunction 0 52.37 15.87 38.17 6.47 0.00 8.55 74.52 7 ER2a ExonRegion 0 24.43 12.20 19.72 4.92 0.00 11.76 41.68 8 E2a_E3a KnownJunction 0 11.27 8.38 5.53 5.01 0.00 9.78 16.14 9 E2a_E3b KnownJunction 0 3.84 1.18 5.46 1.68 0.00 6.11 9.92 10 ER3a ExonRegion 0 55.50 13.98 25.25 8.80 0.00 13.14 51.98 11 E3_Ab KnownBoundary 0 97.04 16.47 44.98 14.39 0.00 13.35 78.56 12 ER3b ExonRegion 0 78.55 18.94 51.09 12.51 0.77 17.90 112.66 13 E3_Da KnownBoundary 0 46.46 13.16 34.88 5.53 1.06 16.29 83.05 14 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3c ExonRegion 0 29.09 17.69 25.37 9.85 0.80 12.02 79.87 16 E3b_E4b KnownJunction 0 24.30 18.71 20.49 9.64 0.95 10.34 53.64 17 ER4a ExonRegion 0 7.94 6.07 7.68 3.33 0.27 3.27 21.14 18 ER4b ExonRegion 0 31.05 9.31 26.34 7.12 0.86 10.29 58.76 19 E4a_E5a KnownJunction 0 21.80 4.23 18.06 2.68 1.18 7.45 41.07 20 I4_SR6 SilentIntronRegion 0 22.96 3.18 6.65 0.41 0.18 0.91 16.04 21 I4_SR7 SilentIntronRegion 0 18.52 2.08 6.89 0.88 0.00 1.25 13.26 22 I4_AR9 ActiveIntronRegion 0 15.70 3.94 6.64 1.39 0.32 0.00 17.13 23 ER5a ExonRegion 0 38.75 9.78 27.87 4.95 0.70 9.20 60.87 24 E5a_E6a KnownJunction 0 13.30 3.68 4.54 3.31 0.00 2.76 13.44 25 E5a_E8a KnownJunction 0 52.92 2.60 29.78 0.00 0.97 1.66 62.60 26 ER6a ExonRegion 1 17.23 4.18 8.68 3.25 13.25 3.97 6.35 27 E6_Da NovelBoundary 0 43.69 60.69 36.21 58.38 197.03 54.22 62.76 28 E6a_E7a KnownJunction 0 4.37 1.00 3.82 1.03 0.00 0.00 2.72 29 I6 Intron 0 20.34 2.66 13.48 3.42 0.30 9.74 13.30 30 I6_AR1 ActiveIntronRegion 0 20.34 2.66 13.48 3.42 0.30 9.74 13.30 31 ER7a ExonRegion 1 19.51 3.49 11.59 1.68 22.03 3.73 5.32 32 E7_Da NovelBoundary 1 17.24 20.10 92.30 21.35 21.62 22.30 13.01 33 E8_Aa NovelBoundary 1 29.14 1.52 14.99 0.00 0.00 0.00 1.10 34 ER8a ExonRegion 0 59.07 5.41 38.55 2.27 0.15 4.74 72.65 35 E8a_E9a KnownJunction 0 50.44 9.64 37.38 7.07 0.00 9.30 79.88 36 ER9a ExonRegion 0 57.80 8.35 40.13 6.28 1.15 6.93 106.08 37 E9_Da NovelBoundary 1 47.57 1.55 24.36 4.04 0.00 0.00 1.48 38 E9a_E10a KnownJunction 0 41.17 7.38 26.28 1.25 1.13 4.40 117.12 39 I9 Intron 1 19.12 1.42 14.01 2.27 0.00 1.43 1.92 40 I9_AR1 ActiveIntronRegion 1 19.18 1.43 14.06 2.28 0.00 1.44 1.93 41 ER10a ExonRegion 0 54.61 7.16 33.24 5.41 2.08 8.31 109.79 42 E10a_E11a KnownJunction 0 56.45 8.88 37.05 4.01 2.90 7.10 95.40 43 ER11a ExonRegion 0 39.84 5.19 44.28 6.52 0.48 4.33 111.57 44 E11a_E12a KnownJunction 0 33.51 1.60 33.50 8.15 1.18 2.49 103.30 45 ER12a ExonRegion 0 35.27 5.09 29.37 9.77 0.60 4.09 87.05 46 E12a_E13a KnownJunction 0 33.41 6.38 30.13 6.85 0.00 3.30 78.65 47 ER13a ExonRegion 0 76.71 11.22 45.30 10.75 0.71 15.05 127.17 48 E13a_E14a KnownJunction 0 59.50 8.77 29.49 10.35 0.00 3.94 94.77 49 ER14a ExonRegion 0 55.83 9.08 38.42 6.22 0.81 11.04 102.28 50 E14_Da NovelBoundary 1 18.94 0.00 15.59 0.00 0.00 0.00 0.00 51 E14a_E15a KnownJunction 0 43.08 5.36 30.81 4.09 0.00 10.99 82.02 52 ER15a ExonRegion 0 63.80 6.72 41.03 7.63 1.23 14.97 104.00 53 E15a_E16a KnownJunction 0 58.51 13.06 46.56 8.40 7.12 16.24 133.33 54 ER16a ExonRegion 0 67.97 13.47 46.47 15.48 1.84 21.46 109.77 55 E16a_E17a KnownJunction 0 96.92 14.71 41.03 12.65 4.26 20.39 135.92 56 ER17a ExonRegion 0 125.23 13.99 49.12 10.59 1.50 19.66 121.12 57 E17a_E18a KnownJunction 0 112.42 11.98 42.71 6.04 2.14 17.98 99.78 58 ER18a ExonRegion 0 36.17 6.20 17.35 4.75 5.35 8.53 42.75