Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CLOCK	Gene	0	58.48	26.89	81.72	32.61	53.35	43.48	88.47
2	309964	Transcript	0	28.13	10.49	41.22	15.42	19.44	15.59	38.80
3	381322	Transcript	0	5.66	3.83	6.47	5.79	9.29	7.39	7.14
4	ER1a	ExonRegion	0	3.48	1.31	4.51	0.33	2.07	4.73	6.69
5	E1a_E3a	KnownJunction	0	10.46	4.97	11.50	1.19	4.01	9.86	15.69
6	ER2a	ExonRegion	0	1.71	3.07	6.92	2.56	2.67	5.82	1.91
7	E2a_E3a	KnownJunction	0	0.58	0.00	0.00	1.57	0.00	0.00	0.00
8	ER3a	ExonRegion	0	20.55	9.79	30.54	15.13	13.34	15.32	26.94
9	E3a_E4a	KnownJunction	0	30.83	14.58	40.45	19.21	23.49	16.70	50.15
10	ER4a	ExonRegion	0	47.75	18.53	60.26	32.50	36.05	18.23	59.01
11	E4a_E5a	KnownJunction	0	7.03	5.54	5.62	7.04	12.79	6.99	9.29
12	E4a_E6a	KnownJunction	1	45.03	12.98	63.06	33.67	26.30	10.37	47.28
13	ER5a	ExonRegion	0	12.16	7.54	12.36	10.38	17.18	14.07	14.01
14	E5a_E6a	KnownJunction	0	6.81	2.99	7.43	7.40	13.81	10.05	10.50
15	ER6a	ExonRegion	0	46.26	18.68	71.55	42.24	43.10	26.89	66.03
16	E6a_E7a	KnownJunction	0	46.05	19.31	63.29	41.29	42.12	22.24	65.68
17	ER7a	ExonRegion	0	63.26	16.93	83.86	31.92	58.16	26.58	73.60
18	E7a_E8a	KnownJunction	0	77.51	16.37	97.59	29.31	71.51	32.64	77.03
19	ER8a	ExonRegion	0	89.92	34.31	126.88	50.75	70.78	51.74	95.98
20	E8a_E9a	KnownJunction	0	106.98	40.54	142.27	44.00	68.42	73.78	91.59
21	ER9a	ExonRegion	0	95.52	37.28	141.91	46.12	65.27	57.93	100.42
22	E9a_E10a	KnownJunction	0	73.80	35.20	116.60	42.86	51.45	52.77	67.00
23	ER10a	ExonRegion	0	63.24	21.64	102.60	31.52	44.25	40.32	63.70
24	E10a_E11a	KnownJunction	0	59.33	18.89	91.18	38.01	38.82	26.50	67.47
25	ER11a	ExonRegion	0	57.11	20.98	99.77	25.35	42.78	27.92	72.45
26	E11a_E12a	KnownJunction	0	56.96	18.50	97.99	23.19	29.51	34.38	78.65
27	ER12a	ExonRegion	0	70.27	23.31	113.70	32.09	55.77	45.67	90.60
28	E12a_E13a	KnownJunction	0	99.19	26.22	139.21	39.53	68.90	52.45	99.57
29	ER13a	ExonRegion	0	77.64	31.85	116.66	39.66	70.21	51.75	99.48
30	E13a_E14a	KnownJunction	0	63.29	22.96	96.55	45.73	70.01	62.87	92.58
31	ER14a	ExonRegion	0	77.52	47.80	115.42	43.58	77.47	44.22	99.10
32	E14a_E15a	KnownJunction	0	88.77	39.28	118.27	45.38	79.19	46.23	103.99
33	ER15a	ExonRegion	0	76.64	42.69	114.04	48.77	84.44	49.20	113.41
34	E15a_E16a	KnownJunction	0	76.19	25.98	114.57	44.16	100.93	42.61	95.86
35	ER16a	ExonRegion	0	112.10	38.83	136.59	53.90	100.43	55.82	140.90
36	E16a_E17a	KnownJunction	0	107.50	37.94	138.27	59.19	123.89	69.79	141.75
37	I16	Intron	0	6.73	5.89	14.99	7.06	0.79	16.44	1.53
38	I16_AR2	ActiveIntronRegion	1	10.83	9.64	24.32	10.88	1.08	28.23	2.38
39	E17_Aa	NovelBoundary	1	10.01	8.72	24.60	2.65	3.48	23.80	3.47
40	ER17a	ExonRegion	0	127.34	38.09	140.28	54.18	96.97	67.70	155.52
41	E17_Da	NovelBoundary	1	8.83	7.57	30.38	3.66	1.98	8.76	1.71
42	E17a_E18a	KnownJunction	0	118.77	37.67	110.44	44.56	63.63	56.90	133.34
43	I17_AR1	ActiveIntronRegion	1	6.65	1.82	24.02	3.27	0.00	10.06	0.51
44	E18_Aa	NovelBoundary	0	4.76	8.41	3.29	1.68	0.00	12.33	1.43
45	ER18a	ExonRegion	0	93.49	45.01	108.48	50.96	91.10	66.04	144.66
46	E18a_E19a	KnownJunction	0	93.78	36.83	93.59	51.01	102.49	85.36	141.57
47	ER19a	ExonRegion	0	63.31	37.90	75.05	46.01	75.25	71.58	136.37
48	E19a_E20a	KnownJunction	0	57.91	39.09	73.78	40.18	74.14	75.31	151.84
49	ER20a	ExonRegion	0	63.49	47.30	96.72	42.96	74.93	75.79	132.25
50	E20a_E21a	KnownJunction	0	58.55	43.74	93.48	49.03	73.26	66.89	135.83
51	E21_Aa	NovelBoundary	0	13.57	16.55	15.63	4.36	2.28	10.40	5.56
52	ER21a	ExonRegion	0	90.72	44.84	118.78	59.86	80.08	73.63	123.80
53	E21a_E22a	KnownJunction	0	81.45	34.13	102.55	58.08	88.96	60.78	107.93
54	E22_Aa	NovelBoundary	0	6.49	6.33	7.63	3.20	0.00	12.33	1.66
55	ER22a	ExonRegion	0	96.12	35.90	118.87	56.03	93.24	71.14	137.16
56	E22a_E23a	KnownJunction	0	81.58	20.07	91.52	29.69	80.36	58.50	145.51
57	I22	Intron	0	8.95	4.45	6.69	2.92	1.26	9.61	2.54
58	I22_SR1	SilentIntronRegion	0	8.97	4.46	6.70	2.93	1.27	9.64	2.54
59	ER23a	ExonRegion	0	76.95	39.79	83.88	45.17	96.31	79.71	144.98
60	E23_Da	NovelBoundary	0	9.85	5.28	7.62	2.55	4.13	13.88	11.82
61	E23a_E24a	KnownJunction	0	60.38	31.76	66.92	37.03	129.07	64.19	135.72
62	I23_AR2	ActiveIntronRegion	0	12.29	13.36	9.23	7.17	0.91	10.73	2.95
63	I23_AR3	ActiveIntronRegion	0	11.27	10.12	10.84	5.82	1.62	11.03	3.37
64	I23_AR4	ActiveIntronRegion	0	9.44	8.16	10.93	4.99	1.62	10.86	3.85
65	I23_AR5	ActiveIntronRegion	0	9.70	4.40	8.64	5.46	4.71	10.34	4.72
66	E24_Aa	NovelBoundary	0	7.63	8.88	5.55	3.44	2.01	10.56	2.44
67	ER24a	ExonRegion	0	60.69	40.07	75.70	38.35	78.23	69.41	138.84
68	E24_Da	NovelBoundary	0	8.23	13.11	3.56	5.74	0.00	10.93	2.15
69	E24a_E25a	KnownJunction	0	41.91	19.89	68.50	34.89	43.06	49.71	87.46
70	I24_SR2	SilentIntronRegion	0	12.33	8.93	6.86	4.75	0.76	12.84	5.12
71	I24_AR4	ActiveIntronRegion	0	18.10	8.25	9.38	5.20	1.25	5.42	3.93
72	E25_Aa	NovelBoundary	1	21.18	13.08	6.97	8.21	2.35	10.83	7.31
73	ER25a	ExonRegion	0	64.45	35.92	71.14	40.94	57.06	54.64	96.78
74	E25_Da	KnownBoundary	0	32.71	14.45	54.00	12.92	22.82	30.28	57.66
75	ER25b	ExonRegion	0	53.54	22.70	85.83	26.49	45.39	37.38	85.53
76	IG26	Intergenic	0	44.37	22.09	59.90	22.35	37.22	36.16	58.15
77	IG26_AR5	ActiveIntergenicRegion	0	34.90	7.17	50.94	15.94	40.99	16.85	30.72
78	IG26_SR5	SilentIntergenicRegion	0	80.23	26.49	100.04	33.14	41.35	53.09	70.25
79	IG26_AR4	ActiveIntergenicRegion	0	50.51	24.81	71.25	26.58	45.43	42.87	71.40
80	IG26_SR4	SilentIntergenicRegion	0	12.59	10.10	7.42	2.82	1.77	10.89	3.87
81	IG26_SR3	SilentIntergenicRegion	0	14.77	13.07	8.64	5.49	3.85	7.03	3.63
82	IG26_SR2	SilentIntergenicRegion	0	22.05	6.71	12.83	1.64	2.48	5.38	4.43
83	IG26_SR1	SilentIntergenicRegion	0	17.12	5.72	10.10	0.00	1.76	4.07	4.10