Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	SENP5	Gene	0	56.36	97.89	66.36	87.37	72.84	80.65	85.02
2	323460	Transcript	0	77.13	117.51	99.36	103.18	79.88	104.99	91.17
3	ER1a	ExonRegion	0	5.31	15.86	3.38	12.05	2.77	12.54	5.20
4	E1a_E2a	KnownJunction	1	19.08	63.79	11.84	49.96	5.51	42.96	11.21
5	E1a_E3a	NovelJunction	0	0.85	4.18	2.77	2.98	4.47	8.17	3.81
6	E2_Aa	NovelBoundary	1	15.32	2.50	8.35	8.43	3.53	0.00	4.00
7	ER2a	ExonRegion	0	71.47	173.32	89.37	152.31	58.54	125.41	98.23
8	E2a_E3a	KnownJunction	0	98.74	175.23	130.61	167.45	66.28	133.84	123.64
9	ER3a	ExonRegion	0	107.32	220.23	144.34	199.24	75.45	184.62	127.18
10	E3a_E4a	KnownJunction	0	204.07	253.39	222.44	216.62	150.63	251.73	175.62
11	ER4a	ExonRegion	0	123.37	153.55	154.70	136.25	117.73	157.26	118.94
12	E4a_E5a	KnownJunction	0	92.43	116.62	97.26	97.12	108.62	103.02	78.54
13	ER5a	ExonRegion	0	122.17	147.91	143.82	119.79	122.19	122.55	111.25
14	E5a_E6a	KnownJunction	0	123.16	129.31	153.60	113.57	136.40	120.41	110.52
15	ER6a	ExonRegion	0	113.69	115.18	149.53	117.97	109.12	136.51	101.44
16	E6_Da	NovelBoundary	0	43.09	21.54	25.56	16.44	20.38	7.26	18.66
17	E6a_E7a	KnownJunction	1	67.59	56.69	104.33	69.79	97.12	68.50	54.96
18	E6a_E8a	NovelJunction	1	11.35	19.94	7.30	12.49	10.14	15.44	24.68
19	E6a_E9a	NovelJunction	0	13.17	38.72	13.15	33.86	1.08	29.05	4.46
20	I6	Intron	0	19.22	11.54	12.43	7.55	8.78	7.06	10.40
21	I6_SR1	SilentIntronRegion	0	16.66	10.46	11.53	6.48	9.05	6.44	10.22
22	I6_AR1	ActiveIntronRegion	0	27.71	13.20	13.52	13.82	7.53	12.58	12.90
23	I6_AR2	ActiveIntronRegion	0	36.19	11.58	19.56	9.62	9.62	13.79	21.27
24	I6_AR3	ActiveIntronRegion	0	30.35	12.15	15.47	5.20	5.13	11.85	21.92
25	I6_SR2	SilentIntronRegion	0	19.23	11.97	12.68	7.31	8.81	6.52	9.90
26	E7_Aa	NovelBoundary	1	29.36	30.03	15.79	13.19	6.18	5.01	19.38
27	ER7a	ExonRegion	0	70.42	65.51	101.84	71.09	90.57	79.61	86.54
28	E7_Da	NovelBoundary	0	37.82	24.22	19.21	6.23	18.81	14.28	15.01
29	E7a_E8a	KnownJunction	0	33.18	49.57	59.78	31.34	47.97	49.15	58.20
30	E7a_E9a	NovelJunction	1	0.85	2.29	5.88	12.46	0.00	11.74	0.62
31	I7	Intron	0	19.23	17.11	11.90	11.49	11.43	13.36	13.61
32	I7_AR1	ActiveIntronRegion	0	43.24	23.98	20.60	19.00	17.24	15.39	16.73
33	I7_SR1	SilentIntronRegion	0	18.96	12.49	11.85	9.26	10.59	12.23	10.66
34	I7_AR2	ActiveIntronRegion	0	16.25	10.24	10.38	7.35	12.77	10.15	14.88
35	I7_AR3	ActiveIntronRegion	0	16.86	30.89	13.38	17.10	12.05	20.91	19.70
36	E8_Aa	NovelBoundary	0	16.32	27.53	8.26	18.02	5.67	27.52	16.40
37	ER8a	ExonRegion	0	37.03	88.47	66.75	60.46	60.27	66.69	99.08
38	E8a_E9a	KnownJunction	0	28.29	92.76	60.99	61.36	35.96	61.13	86.29
39	I8_AR2	ActiveIntronRegion	0	16.16	24.45	11.43	15.63	8.57	13.87	13.98
40	E9_Aa	NovelBoundary	0	14.75	18.44	6.48	9.45	6.09	25.33	8.64
41	ER9a	ExonRegion	0	42.69	118.70	70.22	96.70	61.55	97.43	99.22
42	E9a_E10a	KnownJunction	0	57.85	129.18	71.55	126.30	91.82	121.83	105.55
43	ER10a	ExonRegion	0	47.60	67.40	51.57	61.09	79.21	59.65	80.71
44	IG22	Intergenic	0	30.81	30.23	17.72	13.80	13.87	29.31	21.70
45	IG22_SR1	SilentIntergenicRegion	0	14.06	16.63	7.02	6.00	8.72	10.87	18.12
46	IG22_AR1	ActiveIntergenicRegion	0	36.32	35.09	21.82	14.88	17.00	29.49	25.98
47	IG22_SR2	SilentIntergenicRegion	0	38.05	36.79	21.55	18.72	13.94	46.77	21.79
48	IG22_AR2	ActiveIntergenicRegion	0	27.94	28.60	13.18	15.42	11.12	40.96	12.79
49	IG22_AR3	ActiveIntergenicRegion	0	13.99	11.29	6.02	11.00	5.48	18.64	3.97