Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AC109587.2	Gene	0	1.52	1.91	2.49	4.03	0.66	2.40	1.83
2	403140	Transcript	0	4.42	6.14	6.97	12.19	2.55	6.78	6.21
3	ER1a	ExonRegion	0	5.24	6.57	12.62	9.76	2.21	8.03	3.15
4	E1_Da	NovelBoundary	0	2.42	9.90	18.32	5.04	0.00	1.63	2.36
5	E1a_E2a	KnownJunction	0	10.48	5.62	19.13	13.90	5.58	12.78	5.56
6	ER2a	ExonRegion	0	11.66	5.92	10.26	8.68	1.40	12.54	5.11
7	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER3a	ExonRegion	0	3.93	1.61	3.29	2.93	1.11	3.67	2.66
9	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER5a	ExonRegion	0	0.01	0.09	0.62	0.00	0.00	0.43	0.00
13	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER6a	ExonRegion	0	1.22	1.34	4.17	3.37	0.00	5.11	0.43
15	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER7a	ExonRegion	0	1.75	1.80	4.93	8.99	0.64	6.14	0.26
17	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER8a	ExonRegion	0	4.74	8.60	15.02	28.62	2.20	12.00	7.11
19	E8a_E9a	KnownJunction	0	10.61	17.31	25.29	51.83	8.23	16.72	29.84
20	Ix	Intron	0	12.45	9.86	22.88	10.59	4.36	9.50	14.02
21	Ix_SR2	SilentIntronRegion	0	12.70	9.38	23.81	11.30	4.79	9.62	14.47
22	Ix_AR4	ActiveIntronRegion	0	8.77	12.93	27.33	8.99	5.00	12.95	12.74
23	Ix_AR3	ActiveIntronRegion	0	13.15	15.94	19.71	8.19	3.40	9.86	15.83
24	Ix_AR2	ActiveIntronRegion	0	10.55	9.34	17.81	10.07	2.66	9.13	13.65
25	Ix_SR1	SilentIntronRegion	0	10.98	6.33	21.09	8.68	2.97	7.98	9.20
26	E9_Aa	NovelBoundary	0	103.73	238.70	149.85	291.39	30.75	255.80	119.90
27	ER9a	ExonRegion	0	15.56	26.56	19.76	49.63	12.61	22.77	25.13
28	E9_Da	NovelBoundary	0	130.28	45.42	146.56	103.22	66.95	44.51	69.99
29	E9a_E10a	KnownJunction	0	25.84	45.71	26.23	65.26	21.09	38.40	39.77
30	Ix	Intron	0	12.09	1.90	16.31	1.58	1.21	3.22	3.55
31	Ix_SR1	SilentIntronRegion	0	12.10	1.91	16.32	1.58	1.21	3.22	3.55
32	ER10a	ExonRegion	0	11.91	26.33	21.36	45.78	5.14	23.00	21.50
33	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
34	Ix	Intron	0	13.97	3.69	25.97	4.08	2.51	2.56	3.78
35	Ix_AR1	ActiveIntronRegion	0	14.05	3.71	26.12	4.11	2.52	2.57	3.80
36	ER11a	ExonRegion	0	7.70	11.76	13.79	24.00	1.97	11.89	14.28
37	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER12a	ExonRegion	0	3.21	0.43	4.79	3.84	3.64	2.04	6.28
39	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	Ix	Intron	0	7.19	3.27	20.75	7.30	2.08	6.80	3.73
41	Ix_AR1	ActiveIntronRegion	0	8.40	3.79	26.55	9.13	2.49	7.75	4.94
42	ER13a	ExonRegion	0	1.06	0.00	0.00	0.47	0.51	0.73	0.42
43	E13_Da	NovelBoundary	0	213.55	120.24	368.30	208.36	87.44	154.77	220.26
44	Ix	Intron	0	8.40	3.24	19.64	2.84	2.73	4.03	5.56
45	Ix_AR2	ActiveIntronRegion	0	15.64	3.53	25.33	3.77	3.81	5.60	3.85
46	Ix_SR2	SilentIntronRegion	0	4.31	4.26	17.05	3.05	2.46	4.16	5.98
47	Ix_AR1	ActiveIntronRegion	0	6.13	3.91	20.10	2.89	2.59	4.54	7.42
48	Ix_SR1	SilentIntronRegion	0	8.89	2.05	24.82	1.06	3.00	3.14	8.88
49	E14_Aa	NovelBoundary	0	148.76	61.08	244.21	108.61	81.91	89.86	141.45
50	ER14a	ExonRegion	0	0.06	0.00	0.02	0.00	0.03	0.00	0.00